CL:0000808: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0000808
|name=DN4 thymocyte
|namespace=cell
|def="A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, CD25-negative, and pre-TCR-posi...") |
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|id=CL:0000808 | |id=CL:0000808 | ||
|name=DN4 thymocyte | |name=DN4 thymocyte | ||
|namespace= | |namespace=efo | ||
|def="A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, CD25-negative, and pre-TCR-positive." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149] | |def="A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, CD25-negative, and pre-TCR-positive." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149] | ||
|xref= | |xref= | ||
|is_a=CL:0002489 | |is_a=CL:0000893;;CL:0002489 | ||
|synonym="DN4 alpha-beta immature T lymphocyte" EXACT [];;"DN4 alpha-beta immature T-lymphocyte" EXACT [];;"DN4 cell" EXACT [];;"DN4 immature T cell" EXACT [];;"DN4 immature T-cell" EXACT [];;"double negative 4" EXACT [];;"T.DN4.th" EXACT [] | |synonym="DN4 alpha-beta immature T lymphocyte" EXACT [];;"DN4 alpha-beta immature T-lymphocyte" EXACT [];;"DN4 cell" EXACT [];;"DN4 immature T cell" EXACT [];;"DN4 immature T-cell" EXACT [];;"double negative 4" EXACT [];;"T.DN4.th" EXACT [] | ||
|comment=Note that this type of thymocyte has passed the beta-selection checkpoint and is rapidly proliferating and beginning to rearrange the T cell receptor alpha chain. | |comment=Note that this type of thymocyte has passed the beta-selection checkpoint and is rapidly proliferating and beginning to rearrange the T cell receptor alpha chain. | ||
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|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl | |||
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|preceded_by= | |||
}} | }} | ||
Revision as of 17:38, 15 June 2012
| Name: | DN4 thymocyte |
|---|---|
| Namespace: | efo |
| Definition: | "A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, CD25-negative, and pre-TCR-positive." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149] |
| Synonyms: |
"DN4 alpha-beta immature T lymphocyte" EXACT [] "DN4 alpha-beta immature T-lymphocyte" EXACT [] "DN4 cell" EXACT [] "DN4 immature T cell" EXACT [] "DN4 immature T-cell" EXACT [] "double negative 4" EXACT [] "T.DN4.th" EXACT [] |
| Comments: | Note that this type of thymocyte has passed the beta-selection checkpoint and is rapidly proliferating and beginning to rearrange the T cell receptor alpha chain. |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000893(thymocyte),CL:0002489(double negative thymocyte) |
|---|---|
| develops_from: | CL:0000807(DN3 thymocyte) |
Children
| develops from: | CL:0000805 (immature single positive thymocyte) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000808 (DN4 thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_3005c83685229e8e40986fd4fba8a1e9 | p@chr2:162762361..162762364, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_3005c83685229e8e40986fd4fba8a1e9 | p@chr2:162762361..162762364, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr16:67022522..67022529,+#_dedd15cbb652e63cab88bdf0ce370a92 | p12@CES4A |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:14101134..14101143,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr17:14101134..14101143, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:92006659..92006679,+#_dedd15cbb652e63cab88bdf0ce370a92 | p2@uc002bqw.2 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:162762231..162762234,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr2:162762231..162762234, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:200990231..200990238,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr1:200990231..200990238, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:38287827..38287832,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr7:38287827..38287832, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:146687090..146687095,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr2:146687090..146687095, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr21:43982135..43982142,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr21:43982135..43982142, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:92006659..92006679,+#_dedd15cbb652e63cab88bdf0ce370a92 | p2@uc002bqw.2 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:19479837..19479844,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr7:19479837..19479844, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr21:39490932..39490937,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr21:39490932..39490937, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:16739475..16739490,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr8:16739475..16739490, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:175858389..175858405,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:175858389..175858405, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr21:47278815..47278834,+#_dedd15cbb652e63cab88bdf0ce370a92 | p6@PCBP3 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:134707449..134707458,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:134707449..134707458, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:87797549..87797564,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr9:87797549..87797564, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:134707420..134707442,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:134707420..134707442, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:128884938..128884941,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:128884938..128884941, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:51970952..51970959,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr8:51970952..51970959, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:116857558..116857566,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr9:116857558..116857566, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr16:67022368..67022374,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr16:67022368..67022374, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:141989111..141989114,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr2:141989111..141989114, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:237900222..237900230,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr1:237900222..237900230, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr14:22962827..22962830,+#_dedd15cbb652e63cab88bdf0ce370a92 | p3@uc001weo.2 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:175842470..175842486,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:175842470..175842486, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:202521027..202521058,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr2:202521027..202521058, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:14103251..14103258,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr17:14103251..14103258, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:24272119..24272147,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr5:24272119..24272147, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:92006720..92006726,+#_dedd15cbb652e63cab88bdf0ce370a92 | p1@uc002bqw.2 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:2428062..2428080,+#_dedd15cbb652e63cab88bdf0ce370a92 | p1@uc003gfa.1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr14:22962827..22962830,+#_dedd15cbb652e63cab88bdf0ce370a92 | p3@uc001weo.2 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:50081052..50081075,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr8:50081052..50081075, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:114877856..114877881,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr8:114877856..114877881, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:146998057..146998070,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr2:146998057..146998070, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:92006720..92006726,+#_dedd15cbb652e63cab88bdf0ce370a92 | p1@uc002bqw.2 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:176123823..176123829,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:176123823..176123829, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:117926347..117926353,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr7:117926347..117926353, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:189141918..189141929,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr1:189141918..189141929, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:134707474..134707504,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:134707474..134707504, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:146687090..146687095,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr2:146687090..146687095, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:16739475..16739490,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr8:16739475..16739490, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:134707449..134707458,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:134707449..134707458, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:72117884..72117889,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr9:72117884..72117889, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:133657589..133657598,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:133657589..133657598, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr22:46041912..46041915,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr22:46041912..46041915, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:128884938..128884941,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:128884938..128884941, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:14101134..14101143,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr17:14101134..14101143, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:114877856..114877881,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr8:114877856..114877881, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:192598433..192598481,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr3:192598433..192598481, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:175842511..175842520,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:175842511..175842520, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:175842470..175842486,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:175842470..175842486, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr21:43982135..43982142,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr21:43982135..43982142, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:24623546..24623587,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr13:24623546..24623587, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:133321044..133321049,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chrX:133321044..133321049, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:141989111..141989114,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr2:141989111..141989114, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:24272119..24272147,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr5:24272119..24272147, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr21:39490932..39490937,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr21:39490932..39490937, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:111448516..111448521,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:111448516..111448521, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:50081052..50081075,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr8:50081052..50081075, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr13:24623546..24623587,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr13:24623546..24623587, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:2428062..2428080,+#_dedd15cbb652e63cab88bdf0ce370a92 | p1@uc003gfa.1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:192598433..192598481,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr3:192598433..192598481, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:133321044..133321049,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chrX:133321044..133321049, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:176123823..176123829,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:176123823..176123829, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:67519931..67519935,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr8:67519931..67519935, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:146998057..146998070,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr2:146998057..146998070, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr16:67022368..67022374,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr16:67022368..67022374, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:134707474..134707504,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:134707474..134707504, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:117926347..117926353,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr7:117926347..117926353, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:133657651..133657654,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:133657651..133657654, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:91989101..91989105,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr15:91989101..91989105, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:152204326..152204345,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr3:152204326..152204345, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:72117884..72117889,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr9:72117884..72117889, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:200990231..200990238,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr1:200990231..200990238, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:133657589..133657598,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:133657589..133657598, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:14103251..14103258,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr17:14103251..14103258, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:105805755..105805761,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:105805755..105805761, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:49078833..49078841,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr13:49078833..49078841, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr16:67022522..67022529,+#_dedd15cbb652e63cab88bdf0ce370a92 | p12@CES4A |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:91989101..91989105,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr15:91989101..91989105, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:75251775..75251785,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr8:75251775..75251785, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:175842537..175842553,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:175842537..175842553, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:175842511..175842520,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:175842511..175842520, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:152204326..152204345,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr3:152204326..152204345, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr13:49078833..49078841,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr13:49078833..49078841, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:128263833..128263838,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr6:128263833..128263838, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:4544914..4544917,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr9:4544914..4544917, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:111448516..111448521,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:111448516..111448521, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr21:47278815..47278834,+#_dedd15cbb652e63cab88bdf0ce370a92 | p6@PCBP3 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:69972162..69972169,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr15:69972162..69972169, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:67519931..67519935,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr8:67519931..67519935, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:69972162..69972169,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr15:69972162..69972169, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:128263833..128263838,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr6:128263833..128263838, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:91989133..91989141,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr15:91989133..91989141, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:189141918..189141929,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr1:189141918..189141929, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:133657651..133657654,-#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr4:133657651..133657654, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:237900222..237900230,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr1:237900222..237900230, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:162762231..162762234,+#_dedd15cbb652e63cab88bdf0ce370a92 | p@chr2:162762231..162762234, + |
