CL:0000236: Difference between revisions
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|id=CL:0000236 | |id=CL:0000236 | ||
|name=B cell | |name=B cell | ||
|namespace=efo | |namespace=cell;;efo | ||
|def="A lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149] | |def="A lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149] | ||
|xref=BTO:0000776;;FMA:62869 | |xref=BTO:0000776;;FMA:62869 | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:25, 26 June 2012
| Name: | B cell | ||
|---|---|---|---|
| Namespace: | cell;;efo | ||
| Definition: | "A lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149] | ||
| Xrefs: |
| ||
| Synonyms: |
"B lymphocyte" EXACT [] "B-cell" EXACT [] "B-lymphocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000945(lymphocyte of B lineage) |
|---|
Children
| is a: | CL:0000785 (mature B cell),CL:0000817 (precursor B cell),CL:0000818 (transitional stage B cell) |
|---|---|
| derives from: | FF:0000025 (CD19-positive B cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10534-107G3 (acute lymphoblastic leukemia (B-ALL) cell line:NALM-6)
- 10631-108I1 (diffuse large B-cell lymphoma cell line:CTB-1)
- 11544-120B5 (CD19+ B Cells, donor1)
- 11624-122B4 (CD19+ B Cells, donor2)
- 11705-123B4 (CD19+ B Cells, donor3)
- 11856-125A2 (Mouse CD19+ B Cells, donor1)
- 12151-128F9 (CD19+ B Cells (pluriselect), donor090325, donation1)
- 12174-128I5 (CD19+ B Cells (pluriselect), donor090325, donation2)
- 12189-129B2 (CD19+ B Cells (pluriselect), donor090309, donation1)
- 12194-129B7 (CD19+ B Cells (pluriselect), donor090309, donation2)
... further results Mouse (Mus musculus)
- 10534-107G3 (acute lymphoblastic leukemia (B-ALL) cell line:NALM-6)
- 10631-108I1 (diffuse large B-cell lymphoma cell line:CTB-1)
- 11544-120B5 (CD19+ B Cells, donor1)
- 11624-122B4 (CD19+ B Cells, donor2)
- 11705-123B4 (CD19+ B Cells, donor3)
- 11856-125A2 (Mouse CD19+ B Cells, donor1)
- 12151-128F9 (CD19+ B Cells (pluriselect), donor090325, donation1)
- 12174-128I5 (CD19+ B Cells (pluriselect), donor090325, donation2)
- 12189-129B2 (CD19+ B Cells (pluriselect), donor090309, donation1)
- 12194-129B7 (CD19+ B Cells (pluriselect), donor090309, donation2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000236 (B cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.42e-143 | FFCP PHASE1:Hg19::chr11:58869930..58869933,-#_81dd3c8a9f75df66219016782b0699ee | p@chr11:58869930..58869933, - |
| 3.42e-143 | FFCP PHASE2:Hg19::chr11:58869930..58869933,-#_81dd3c8a9f75df66219016782b0699ee | p@chr11:58869930..58869933, - |
| 5.72e-141 | FFCP PHASE2:Hg19::chr11:82774371..82774374,-#_0415c70166d0cc9ef543014908454b89 | p@chr11:82774371..82774374, - |
| 5.72e-141 | FFCP PHASE1:Hg19::chr4:102879640..102879645,+#_0415c70166d0cc9ef543014908454b89 | p@chr4:102879640..102879645, + |
| 5.72e-141 | FFCP PHASE2:Hg19::chr4:102879640..102879645,+#_0415c70166d0cc9ef543014908454b89 | p@chr4:102879640..102879645, + |
| 5.72e-141 | FFCP PHASE1:Hg19::chr11:82774371..82774374,-#_0415c70166d0cc9ef543014908454b89 | p@chr11:82774371..82774374, - |
| 6.53e-141 | FFCP PHASE1:Hg19::chr2:231313038..231313049,+#_d90cf824cdbe5393b46db52ae5bbfb14 | p@chr2:231313038..231313049, + |
| 6.53e-141 | FFCP PHASE2:Hg19::chr6:32575596..32575598,-#_d90cf824cdbe5393b46db52ae5bbfb14 | p@chr6:32575596..32575598, - |
| 6.53e-141 | FFCP PHASE2:Hg19::chr2:231313038..231313049,+#_d90cf824cdbe5393b46db52ae5bbfb14 | p@chr2:231313038..231313049, + |
| 6.53e-141 | FFCP PHASE1:Hg19::chr6:32575596..32575598,-#_d90cf824cdbe5393b46db52ae5bbfb14 | p@chr6:32575596..32575598, - |
| 1.35e-139 | FFCP PHASE2:Hg19::chr10:5882480..5882508,+#_729db76eee1fa9005d9f52313bd46ceb | p@chr10:5882480..5882508, + |
| 1.35e-139 | FFCP PHASE1:Hg19::chr10:5882480..5882508,+#_729db76eee1fa9005d9f52313bd46ceb | p@chr10:5882480..5882508, + |
| 2.14e-139 | FFCP PHASE1:Hg19::chr19:42385114..42385126,+#_bdbe002b341048bf96b94c4c89c12167 | p@chr19:42385114..42385126, + |
| 2.14e-139 | FFCP PHASE2:Hg19::chr19:42385114..42385126,+#_bdbe002b341048bf96b94c4c89c12167 | p@chr19:42385114..42385126, + |
| 8.11e-139 | FFCP PHASE1:Hg19::chr9:37034277..37034297,+#_7398d650f529453bd286875eec180644 | p@chr9:37034277..37034297, + |
| 8.11e-139 | FFCP PHASE2:Hg19::chr9:37034277..37034297,+#_7398d650f529453bd286875eec180644 | p@chr9:37034277..37034297, + |
| 1.18e-134 | FFCP PHASE1:Hg19::chr6:89324309..89324332,-#_eb9bb07bcc2a16c9a59a1b7b36960641 | p@chr6:89324309..89324332, - |
| 1.18e-134 | FFCP PHASE2:Hg19::chr6:89324309..89324332,-#_eb9bb07bcc2a16c9a59a1b7b36960641 | p@chr6:89324309..89324332, - |
| 6.0e-134 | FFCP PHASE2:Hg19::chr3:112178705..112178716,-#_538ade58b9413e125c8f2c3c4b590e5b | p@chr3:112178705..112178716, - |
| 6.0e-134 | FFCP PHASE1:Hg19::chr3:112178705..112178716,-#_538ade58b9413e125c8f2c3c4b590e5b | p@chr3:112178705..112178716, - |
| 2.29e-130 | FFCP PHASE1:Hg19::chr9:82847043..82847053,+#_b8321a61341e54f627075d77666e21e6 | p@chr9:82847043..82847053, + |
| 2.29e-130 | FFCP PHASE2:Hg19::chr9:82847043..82847053,+#_b8321a61341e54f627075d77666e21e6 | p@chr9:82847043..82847053, + |
| 5.01e-127 | FFCP PHASE1:Hg19::chr9:37034351..37034358,+#_d05cc611106a9cfcc4d588f3696f0531 | p@chr9:37034351..37034358, + |
| 5.01e-127 | FFCP PHASE2:Hg19::chr9:37034351..37034358,+#_d05cc611106a9cfcc4d588f3696f0531 | p@chr9:37034351..37034358, + |
| 9.66e-127 | FFCP PHASE1:Hg19::chr6:32784847..32784854,-#_5721bfff5d7c03214d0a1c58d47ced2c | p2@HLA-DOB |
| 9.66e-127 | FFCP PHASE2:Hg19::chr6:32784847..32784854,-#_5721bfff5d7c03214d0a1c58d47ced2c | p2@HLA-DOB |
| 3.36e-125 | FFCP PHASE1:Hg19::chr6:89324022..89324033,-#_43c28cfcc18d915840311d8b52db7d81 | p@chr6:89324022..89324033, - |
| 3.36e-125 | FFCP PHASE2:Hg19::chr6:89324022..89324033,-#_43c28cfcc18d915840311d8b52db7d81 | p@chr6:89324022..89324033, - |
| 2.02e-124 | FFCP PHASE1:Hg19::chr9:37027587..37027596,-#_fcc6671a0de5b2d73296256189301a55 | p@chr9:37027587..37027596, - |
| 2.02e-124 | FFCP PHASE2:Hg19::chr9:37027587..37027596,-#_fcc6671a0de5b2d73296256189301a55 | p@chr9:37027587..37027596, - |
| 3.94e-121 | FFCP PHASE1:Hg19::chr16:15733143..15733164,-#_6adae72e4803108404f74df3fa9240fd | p13@KIAA0430 |
| 3.94e-121 | FFCP PHASE2:Hg19::chr16:15733143..15733164,-#_6adae72e4803108404f74df3fa9240fd | p13@KIAA0430 |
| 9.8e-121 | FFCP PHASE2:Hg19::chr14:106367355..106367369,-#_a6ca27c49ab1490be1d448db3cad9832 | p@chr14:106367355..106367369, - |
| 9.8e-121 | FFCP PHASE1:Hg19::chr14:106367355..106367369,-#_a6ca27c49ab1490be1d448db3cad9832 | p@chr14:106367355..106367369, - |
| 2.95e-119 | FFCP PHASE1:Hg19::chr2:89184868..89184885,+#_c8933f0283cc6df22199b061c1c5b6a1 | p1@IGKV4-1 |
| 2.95e-119 | FFCP PHASE2:Hg19::chr2:89184868..89184885,+#_c8933f0283cc6df22199b061c1c5b6a1 | p1@IGKV4-1 |
| 5.46e-119 | FFCP PHASE1:Hg19::chr1:203294429..203294440,+#_4117cc656f252839bcc7727a9be09b88 | p@chr1:203294429..203294440, + |
| 5.46e-119 | FFCP PHASE2:Hg19::chr1:203294429..203294440,+#_4117cc656f252839bcc7727a9be09b88 | p@chr1:203294429..203294440, + |
| 9.11e-119 | FFCP PHASE1:Hg19::chr7:120789593..120789628,+#_40d7782e98770d0d9c9e3b84188898a9 | p10@C7orf58 |
| 9.11e-119 | FFCP PHASE2:Hg19::chr7:120789593..120789628,+#_40d7782e98770d0d9c9e3b84188898a9 | p10@C7orf58 |
| 2.42e-118 | FFCP PHASE1:Hg19::chr9:95491611..95491638,-#_5f88e6deb640bed8f5ad7f8090c16923 | p@chr9:95491611..95491638, - |
| 2.42e-118 | FFCP PHASE2:Hg19::chr9:95491611..95491638,-#_5f88e6deb640bed8f5ad7f8090c16923 | p@chr9:95491611..95491638, - |
| 1.04e-116 | FFCP PHASE2:Hg19::chr14:96181767..96181778,+#_891493aa6f6da719c9aa26e9be534689 | p2@ENST00000556386 |
| 1.04e-116 | FFCP PHASE1:Hg19::chr14:96181767..96181778,+#_891493aa6f6da719c9aa26e9be534689 | p2@ENST00000556386 |
| 1.03e-115 | FFCP PHASE2:Hg19::chr14:96178718..96178752,-#_029df5f2a5c689834987d4088e9865ff | p3@TCL1A |
| 1.03e-115 | FFCP PHASE1:Hg19::chr14:96178718..96178752,-#_029df5f2a5c689834987d4088e9865ff | p3@TCL1A |
| 2.11e-113 | FFCP PHASE2:Hg19::chr4:102711977..102711978,+#_99149b1bd51810f5edf5b2385a23d000 | p9@BANK1 |
| 2.11e-113 | FFCP PHASE1:Hg19::chr4:102711977..102711978,+#_99149b1bd51810f5edf5b2385a23d000 | p9@BANK1 |
| 4.0e-113 | FFCP PHASE2:Hg19::chr3:107938341..107938354,-#_df845218ffbe2811a42e0fc566bfdbe0 | p9@IFT57 |
| 4.0e-113 | FFCP PHASE1:Hg19::chr3:107938341..107938354,-#_df845218ffbe2811a42e0fc566bfdbe0 | p9@IFT57 |
| 7.43e-113 | FFCP PHASE2:Hg19::chr14:96178079..96178099,+#_55cf8bb1fdf31cf705c45d9b31260a65 | p1@ENST00000547644, p1@ENST00000553445 |
| 7.43e-113 | FFCP PHASE1:Hg19::chr14:96178079..96178099,+#_55cf8bb1fdf31cf705c45d9b31260a65 | p1@ENST00000547644, p1@ENST00000553445 |
| 7.69e-113 | FFCP PHASE2:Hg19::chr2:232536651..232536664,+#_9be1f68cee48ef98e16dc475155a6606 | p@chr2:232536651..232536664, + |
| 7.69e-113 | FFCP PHASE1:Hg19::chr2:232536651..232536664,+#_9be1f68cee48ef98e16dc475155a6606 | p@chr2:232536651..232536664, + |
| 1.43e-112 | FFCP PHASE1:Hg19::chr12:111078151..111078169,+#_1c47b9e6b9656dc7876d456f26882ad8 | p8@TCTN1 |
| 1.43e-112 | FFCP PHASE2:Hg19::chr12:111078151..111078169,+#_1c47b9e6b9656dc7876d456f26882ad8 | p8@TCTN1 |
| 7.03e-112 | FFCP PHASE1:Hg19::chr9:37326030..37326040,+#_2a82619867f5c8abb3ba4441fbfbc229 | p10@ZCCHC7 |
| 7.03e-112 | FFCP PHASE2:Hg19::chr9:37326030..37326040,+#_2a82619867f5c8abb3ba4441fbfbc229 | p10@ZCCHC7 |
| 7.03e-112 | FFCP PHASE2:Hg19::chr14:53190525..53190534,+#_2a82619867f5c8abb3ba4441fbfbc229 | p4@PSMC6 |
| 7.03e-112 | FFCP PHASE1:Hg19::chr14:53190525..53190534,+#_2a82619867f5c8abb3ba4441fbfbc229 | p4@PSMC6 |
| 2.24e-111 | FFCP PHASE1:Hg19::chr1:38940657..38940700,+#_b6b27b428eff6ee0361471889eeeb085 | p2@ENST00000452971 |
| 2.24e-111 | FFCP PHASE2:Hg19::chr1:38940657..38940700,+#_b6b27b428eff6ee0361471889eeeb085 | p2@ENST00000452971 |
| 3.69e-111 | FFCP PHASE2:Hg19::chr17:9955844..9955857,-#_d7e5ff418e79beb9fe4cf47703c7f167 | p@chr17:9955844..9955857, - |
| 3.69e-111 | FFCP PHASE1:Hg19::chr17:9955844..9955857,-#_d7e5ff418e79beb9fe4cf47703c7f167 | p@chr17:9955844..9955857, - |
| 7.87e-108 | FFCP PHASE2:Hg19::chr22:33617765..33617772,-#_25661658d5721e3cb6fe7280e2ac036c | p2@ENST00000421232 |
| 7.87e-108 | FFCP PHASE1:Hg19::chr22:33617765..33617772,-#_25661658d5721e3cb6fe7280e2ac036c | p2@ENST00000421232 |
| 1.23e-107 | FFCP PHASE1:Hg19::chr22:23260324..23260332,+#_5cb47d27e95d0da3592f8176512c3aec | p@chr22:23260324..23260332, + |
| 1.23e-107 | FFCP PHASE2:Hg19::chr22:23260324..23260332,+#_5cb47d27e95d0da3592f8176512c3aec | p@chr22:23260324..23260332, + |
| 1.53e-107 | FFCP PHASE1:Hg19::chr1:220943806..220943817,+#_c761b31584d70d13bdbaf7a01de7f4c1 | p@chr1:220943806..220943817, + |
| 1.53e-107 | FFCP PHASE2:Hg19::chr1:220943806..220943817,+#_c761b31584d70d13bdbaf7a01de7f4c1 | p@chr1:220943806..220943817, + |
| 1.92e-107 | FFCP PHASE2:Hg19::chr10:49880475..49880487,-#_b91dffd0053f4e1a0e618239fda2ff19 | p1@ENST00000440750 |
| 1.92e-107 | FFCP PHASE1:Hg19::chr10:49880475..49880487,-#_b91dffd0053f4e1a0e618239fda2ff19 | p1@ENST00000440750 |
| 2.67e-107 | FFCP PHASE2:Hg19::chr14:106352840..106352888,-#_b778291eefbe2642efab9d08f7fa7057 | p@chr14:106352840..106352888, - |
| 2.67e-107 | FFCP PHASE1:Hg19::chr14:106352840..106352888,-#_b778291eefbe2642efab9d08f7fa7057 | p@chr14:106352840..106352888, - |
| 1.83e-106 | FFCP PHASE1:Hg19::chr7:22701524..22701535,-#_16b4236ae65615787ceca41335724cbc | p2@ENST00000442252 |
| 1.83e-106 | FFCP PHASE2:Hg19::chr7:22701524..22701535,-#_16b4236ae65615787ceca41335724cbc | p2@ENST00000442252 |
| 2.23e-106 | FFCP PHASE1:Hg19::chr1:157779174..157779185,-#_d8ed0d07e200908dac30f8f7a8afd7b0 | p@chr1:157779174..157779185, - |
| 2.23e-106 | FFCP PHASE2:Hg19::chr1:157779174..157779185,-#_d8ed0d07e200908dac30f8f7a8afd7b0 | p@chr1:157779174..157779185, - |
| 3.68e-106 | FFCP PHASE1:Hg19::chr12:32040185..32040200,-#_e7f1cb02ff67113fc0042ad02ab39db8 | p2@ENST00000535163 |
| 3.68e-106 | FFCP PHASE2:Hg19::chr12:32040185..32040200,-#_e7f1cb02ff67113fc0042ad02ab39db8 | p2@ENST00000535163 |
| 4.62e-106 | FFCP PHASE2:Hg19::chr19:7766976..7766982,-#_496ce1eea987cec68b44bfebe86cfa5c | p9@FCER2 |
| 4.62e-106 | FFCP PHASE1:Hg19::chr19:7766976..7766982,-#_496ce1eea987cec68b44bfebe86cfa5c | p9@FCER2 |
| 8.16e-106 | FFCP PHASE1:Hg19::chr3:45637869..45637880,-#_12f99c06cd48ab3faba83afa15bf72a6 | p@chr3:45637869..45637880, - |
| 8.16e-106 | FFCP PHASE2:Hg19::chr3:45637869..45637880,-#_12f99c06cd48ab3faba83afa15bf72a6 | p@chr3:45637869..45637880, - |
| 4.61e-103 | FFCP PHASE1:Hg19::chr5:111857189..111857217,+#_77d3bc8c6926461eabc0d327448a54de | p1@ENST00000541361 |
| 4.61e-103 | FFCP PHASE2:Hg19::chr5:111857189..111857217,+#_77d3bc8c6926461eabc0d327448a54de | p1@ENST00000541361 |
| 6.12e-103 | FFCP PHASE1:Hg19::chr2:89145640..89145676,+#_aca62f993d9d2a3b790e1072132ce2ee | p@chr2:89145640..89145676, + |
| 6.12e-103 | FFCP PHASE2:Hg19::chr2:89145640..89145676,+#_aca62f993d9d2a3b790e1072132ce2ee | p@chr2:89145640..89145676, + |
| 6.12e-103 | FFCP PHASE1:Hg19::chr9:35618447..35618456,-#_aca62f993d9d2a3b790e1072132ce2ee | p7@CD72 |
| 6.12e-103 | FFCP PHASE2:Hg19::chr9:35618447..35618456,-#_aca62f993d9d2a3b790e1072132ce2ee | p7@CD72 |
| 7.75e-103 | FFCP PHASE1:Hg19::chr12:111078120..111078129,+#_61fb4f9a23b59b08480351fd84bbe701 | p9@TCTN1 |
| 7.75e-103 | FFCP PHASE2:Hg19::chr12:111078120..111078129,+#_61fb4f9a23b59b08480351fd84bbe701 | p9@TCTN1 |
| 7.43e-102 | FFCP PHASE2:Hg19::chr10:97501785..97501801,+#_cd17ad4ccabdea31d18f9cb3f9511ca1 | p9@ENTPD1 |
| 7.43e-102 | FFCP PHASE1:Hg19::chr10:97501785..97501801,+#_cd17ad4ccabdea31d18f9cb3f9511ca1 | p9@ENTPD1 |
| 1.94e-101 | FFCP PHASE1:Hg19::chr3:107938378..107938392,-#_4772d22d123e677de6174ee2a255291d | p7@IFT57 |
| 1.94e-101 | FFCP PHASE2:Hg19::chr3:107938378..107938392,-#_4772d22d123e677de6174ee2a255291d | p7@IFT57 |
| 3.28e-101 | FFCP PHASE1:Hg19::chr7:148133853..148133864,-#_801575e89e304e90bb1af52c1049a594 | p@chr7:148133853..148133864, - |
| 3.28e-101 | FFCP PHASE2:Hg19::chr7:148133853..148133864,-#_801575e89e304e90bb1af52c1049a594 | p@chr7:148133853..148133864, - |
| 6.05e-101 | FFCP PHASE1:Hg19::chr18:77220664..77220696,+#_3e0230be74c0a04997db16452342c4d1 | p@chr18:77220664..77220696, + |
| 6.05e-101 | FFCP PHASE2:Hg19::chr18:77220664..77220696,+#_3e0230be74c0a04997db16452342c4d1 | p@chr18:77220664..77220696, + |
