UBERON:0002321: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0002321
|name=extraglomerular mesangium
|namespace=
|def=
|xref=EMAPA:28278;;FMA:84141;;MA:0002602
|is_a=UBERON:0003567;;UBERON:0003891;;UBERON:00041...") |
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|def= | |def= | ||
|xref=EMAPA:28278;;FMA:84141;;MA:0002602 | |xref=EMAPA:28278;;FMA:84141;;MA:0002602 | ||
|is_a=UBERON:0003567;;UBERON:0003891;;UBERON:0004120 | |is_a=UBERON:0003567;;UBERON:0003891;;UBERON:0004120;;UBERON:0006554 | ||
|synonym= | |synonym= | ||
|comment=editor note - check MA part_ofs - should be spatially disjoint from renal glomerulus? | |comment=editor note - check MA part_ofs - should be spatially disjoint from renal glomerulus? | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
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|located_in= | |located_in= | ||
|part_of=UBERON:0001229;;UBERON:0002303;;UBERON:0002319 | |part_of=UBERON:0001229;;UBERON:0002303;;UBERON:0002319 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Latest revision as of 13:31, 27 June 2012
| Name: | extraglomerular mesangium | ||
|---|---|---|---|
| Xrefs: |
| ||
| Comments: | editor note - check MA part_ofs - should be spatially disjoint from renal glomerulus? | ||
| Alt_id: | UBERON:FMA_84141-MA_0002602 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003567(abdomen connective tissue),UBERON:0003891(stroma),UBERON:0004120(mesoderm-derived structure),UBERON:0006554(urinary system structure) |
|---|---|
| part_of: | UBERON:0001229(renal corpuscle),UBERON:0002303(juxtaglomerular apparatus),UBERON:0002319(mesangium) |
Children
| part of: | CL:0002173 (extraglomerular mesangial cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11679-122H5 (Renal Mesangial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002321 (extraglomerular mesangium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.34e-79 | FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_1ce34683a19fcb3f3db10fa17f354424 | p@chr2:133426030..133426041, - |
| 2.34e-79 | FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_1ce34683a19fcb3f3db10fa17f354424 | p@chr2:133426030..133426041, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_982463c32dbd45ba36409bccd248466b | p23@TTC39A |
| 3.49e-79 | FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_982463c32dbd45ba36409bccd248466b | p23@TTC39A |
| 2.03e-66 | FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_97e3d955123b647c088a719270763249 | p@chr2:133426106..133426117, - |
| 2.03e-66 | FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_97e3d955123b647c088a719270763249 | p@chr2:133426106..133426117, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr10:134535354..134535366,-#_f257b62251e4f7119fa09709745f461a | p@chr10:134535354..134535366, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_f257b62251e4f7119fa09709745f461a | p8@PAX2 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr10:134535354..134535366,-#_f257b62251e4f7119fa09709745f461a | p@chr10:134535354..134535366, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_f257b62251e4f7119fa09709745f461a | p8@PAX2 |
| 3.11e-50 | FFCP PHASE1:Hg19::chr17:17480803..17480814,-#_e6b51a7ca38f89efc66616ba0c54ac67 | p19@PEMT |
| 3.11e-50 | FFCP PHASE2:Hg19::chr17:17480803..17480814,-#_e6b51a7ca38f89efc66616ba0c54ac67 | p19@PEMT |
| 4.52e-50 | FFCP PHASE1:Hg19::chr9:81641483..81641491,-#_60c2b980d9ed5ff6fb0f7baf27053d32 | p@chr9:81641483..81641491, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_60c2b980d9ed5ff6fb0f7baf27053d32 | p10@PAX2 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_60c2b980d9ed5ff6fb0f7baf27053d32 | p10@PAX2 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr9:81641483..81641491,-#_60c2b980d9ed5ff6fb0f7baf27053d32 | p@chr9:81641483..81641491, - |
| 8.98e-41 | FFCP PHASE2:Hg19::chr17:171082..171101,+#_7391291e56c731ccb5d1b1ff6ba19b9f | p@chr17:171082..171101, + |
| 8.98e-41 | FFCP PHASE1:Hg19::chr17:171082..171101,+#_7391291e56c731ccb5d1b1ff6ba19b9f | p@chr17:171082..171101, + |
| 1.1e-40 | FFCP PHASE2:Hg19::chr3:172384246..172384250,+#_290376cd5013209ddf3feaebc190d721 | p@chr3:172384246..172384250, + |
| 1.1e-40 | FFCP PHASE1:Hg19::chr3:172384246..172384250,+#_290376cd5013209ddf3feaebc190d721 | p@chr3:172384246..172384250, + |
| 1.64e-40 | FFCP PHASE2:Hg19::chr1:45087902..45087912,+#_6b6ddc239aa04181225ad7eaaa082b86 | p@chr1:45087902..45087912, + |
| 1.64e-40 | FFCP PHASE1:Hg19::chr1:45087902..45087912,+#_6b6ddc239aa04181225ad7eaaa082b86 | p@chr1:45087902..45087912, + |
| 3.68e-40 | FFCP PHASE2:Hg19::chr10:102505552..102505563,+#_ffdc13fda1f119d9468dfe081653c20c | p5@PAX2 |
| 3.68e-40 | FFCP PHASE1:Hg19::chr10:102505552..102505563,+#_ffdc13fda1f119d9468dfe081653c20c | p5@PAX2 |
| 8.2e-37 | FFCP PHASE2:Hg19::chr10:102505312..102505320,+#_4c4dc6598c023003701fa158cef6e06b | p6@PAX2 |
| 8.2e-37 | FFCP PHASE1:Hg19::chr10:102505312..102505320,+#_4c4dc6598c023003701fa158cef6e06b | p6@PAX2 |
| 9.84e-37 | FFCP PHASE2:Hg19::chr9:126131131..126131159,+#_55f3e44a31e1a0c87e0f378ae68bac9f | p3@CRB2 |
| 9.84e-37 | FFCP PHASE1:Hg19::chr9:126131131..126131159,+#_55f3e44a31e1a0c87e0f378ae68bac9f | p3@CRB2 |
| 6.0e-34 | FFCP PHASE1:Hg19::chr2:113984760..113984792,+#_d1d0cc4af7ae0aa3e95e0cfb78d89954 | p@chr2:113984760..113984792, + |
| 6.0e-34 | FFCP PHASE2:Hg19::chr2:113984760..113984792,+#_d1d0cc4af7ae0aa3e95e0cfb78d89954 | p@chr2:113984760..113984792, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr11:555661..555679,+#_9f33f98c5f8f201a687efd4f860e5040 | p@chr11:555661..555679, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr1:858638..858648,+#_9f33f98c5f8f201a687efd4f860e5040 | p@chr1:858638..858648, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr7:27164585..27164612,-#_9f33f98c5f8f201a687efd4f860e5040 | p@chr7:27164585..27164612, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr11:555661..555679,+#_9f33f98c5f8f201a687efd4f860e5040 | p@chr11:555661..555679, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr1:858638..858648,+#_9f33f98c5f8f201a687efd4f860e5040 | p@chr1:858638..858648, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr7:27164585..27164612,-#_9f33f98c5f8f201a687efd4f860e5040 | p@chr7:27164585..27164612, - |
| 8.39e-34 | FFCP PHASE2:Hg19::chr10:73848549..73848564,-#_775720cdf9747676990e5fd6cb648236 | p13@SPOCK2 |
| 8.39e-34 | FFCP PHASE1:Hg19::chr10:73848549..73848564,-#_775720cdf9747676990e5fd6cb648236 | p13@SPOCK2 |
| 1.17e-33 | FFCP PHASE2:Hg19::chr11:118477144..118477156,+#_edbb23d80c35f9e44f80b2f781e64e78 | p25@PHLDB1 |
| 1.17e-33 | FFCP PHASE1:Hg19::chr11:118477144..118477156,+#_edbb23d80c35f9e44f80b2f781e64e78 | p25@PHLDB1 |
| 3.35e-32 | FFCP PHASE1:Hg19::chr2:693362..693373,+#_f1e756f536c9ecdf57549eda448e363e | p@chr2:693362..693373, + |
| 3.35e-32 | FFCP PHASE2:Hg19::chr2:693362..693373,+#_f1e756f536c9ecdf57549eda448e363e | p@chr2:693362..693373, + |
| 2.54e-31 | FFCP PHASE1:Hg19::chrX:106146562..106146577,-#_a4a08a83598ed3029423f83d53d294ee | p1@RIPPLY1 |
| 2.54e-31 | FFCP PHASE2:Hg19::chrX:106146562..106146577,-#_a4a08a83598ed3029423f83d53d294ee | p1@RIPPLY1 |
| 8.05e-30 | FFCP PHASE1:Hg19::chr17:171147..171161,+#_5af3bcebe5048f4c5976cdee25692037 | p@chr17:171147..171161, + |
| 8.05e-30 | FFCP PHASE2:Hg19::chr17:171147..171161,+#_5af3bcebe5048f4c5976cdee25692037 | p@chr17:171147..171161, + |
| 2.96e-29 | FFCP PHASE1:Hg19::chr2:165477405..165477418,-#_aa29452c165c44bce3e4f3b8279615a7 | p@chr2:165477405..165477418, - |
| 2.96e-29 | FFCP PHASE2:Hg19::chr2:165477405..165477418,-#_aa29452c165c44bce3e4f3b8279615a7 | p@chr2:165477405..165477418, - |
| 4.55e-29 | FFCP PHASE2:Hg19::chr1:874109..874143,+#_a8454bf590a2813686eb4685973e476c | p@chr1:874109..874143, + |
| 4.55e-29 | FFCP PHASE1:Hg19::chr1:874109..874143,+#_a8454bf590a2813686eb4685973e476c | p@chr1:874109..874143, + |
| 1.43e-28 | FFCP PHASE2:Hg19::chr2:113999199..113999214,+#_e16a5cfd628a47706afd5894b8ccf9a2 | p@chr2:113999199..113999214, + |
| 1.43e-28 | FFCP PHASE1:Hg19::chr2:113999199..113999214,+#_e16a5cfd628a47706afd5894b8ccf9a2 | p@chr2:113999199..113999214, + |
| 1.83e-27 | FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_741a04d26f8018c4c406011e646a9c34 | p7@LRRN4 |
| 1.83e-27 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_741a04d26f8018c4c406011e646a9c34 | p@chr16:86604624..86604648, + |
| 1.83e-27 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_741a04d26f8018c4c406011e646a9c34 | p@chr16:86604624..86604648, + |
| 1.83e-27 | FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_741a04d26f8018c4c406011e646a9c34 | p7@LRRN4 |
| 2.74e-27 | FFCP PHASE2:Hg19::chr19:56091499..56091517,-#_7dc77def4476ab0c11fea236ae43c943 | p@chr19:56091499..56091517, - |
| 2.74e-27 | FFCP PHASE1:Hg19::chr19:56091499..56091517,-#_7dc77def4476ab0c11fea236ae43c943 | p@chr19:56091499..56091517, - |
| 2.78e-26 | FFCP PHASE2:Hg19::chr9:112260040..112260045,+#_994cfd0749a5200c27eec34fd5943fa8 | p@chr9:112260040..112260045, + |
| 2.78e-26 | FFCP PHASE1:Hg19::chr9:112260040..112260045,+#_994cfd0749a5200c27eec34fd5943fa8 | p@chr9:112260040..112260045, + |
| 4.63e-26 | FFCP PHASE2:Hg19::chr22:30645170..30645182,-#_9869e60e65d4bdd24bbb20b9a919c6b2 | p@chr22:30645170..30645182, - |
| 4.63e-26 | FFCP PHASE1:Hg19::chr22:30645170..30645182,-#_9869e60e65d4bdd24bbb20b9a919c6b2 | p@chr22:30645170..30645182, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:22419319..22419327,+#_5b7c6e884d3b5cdeb5bebfd95a988d4b | p@chr8:22419319..22419327, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:22419319..22419327,+#_5b7c6e884d3b5cdeb5bebfd95a988d4b | p@chr8:22419319..22419327, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr17:15555143..15555150,-#_ab13ed4df044a7279240145a297d109b | p12@TRIM16 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr6:31833005..31833017,-#_ab13ed4df044a7279240145a297d109b | p@chr6:31833005..31833017, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr8:28196820..28196830,+#_ab13ed4df044a7279240145a297d109b | p@chr8:28196820..28196830, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr2:176973165..176973169,-#_ab13ed4df044a7279240145a297d109b | p@chr2:176973165..176973169, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr20:6031540..6031548,-#_ab13ed4df044a7279240145a297d109b | p@chr20:6031540..6031548, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr10:102505946..102505949,+#_ab13ed4df044a7279240145a297d109b | p14@PAX2 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr6:31833005..31833017,-#_ab13ed4df044a7279240145a297d109b | p@chr6:31833005..31833017, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr11:32457397..32457404,-#_ab13ed4df044a7279240145a297d109b | p15@WT1 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr17:15555143..15555150,-#_ab13ed4df044a7279240145a297d109b | p12@TRIM16 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr10:102505946..102505949,+#_ab13ed4df044a7279240145a297d109b | p14@PAX2 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr11:32457397..32457404,-#_ab13ed4df044a7279240145a297d109b | p15@WT1 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr8:28196820..28196830,+#_ab13ed4df044a7279240145a297d109b | p@chr8:28196820..28196830, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr2:176973165..176973169,-#_ab13ed4df044a7279240145a297d109b | p@chr2:176973165..176973169, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr20:6031540..6031548,-#_ab13ed4df044a7279240145a297d109b | p@chr20:6031540..6031548, - |
| 2.37e-25 | FFCP PHASE1:Hg19::chr7:27160553..27160560,+#_b723d427aa49d8d4ae09730185cac6f3 | p1@ENST00000523364, p1@uc010kux.1 |
| 2.37e-25 | FFCP PHASE2:Hg19::chr7:27160553..27160560,+#_b723d427aa49d8d4ae09730185cac6f3 | p1@ENST00000523364, p1@uc010kux.1 |
| 4.38e-25 | FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_a7f114823e9bb4057c27b5d0a128ebe0 | p16@HOXA10 |
| 4.38e-25 | FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_a7f114823e9bb4057c27b5d0a128ebe0 | p16@HOXA10 |
| 4.43e-25 | FFCP PHASE2:Hg19::chr1:149908263..149908281,-#_84bae9d20b21f63a022f209d67871dfb | p6@MTMR11 |
| 4.43e-25 | FFCP PHASE1:Hg19::chr1:149908263..149908281,-#_84bae9d20b21f63a022f209d67871dfb | p6@MTMR11 |
| 7.09e-25 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_2a04df46fae58a4a8fd7f50324b8a291 | p4@PAX2 |
| 7.09e-25 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_2a04df46fae58a4a8fd7f50324b8a291 | p4@PAX2 |
| 3.76e-24 | FFCP PHASE1:Hg19::chr1:46797583..46797614,-#_bff54df3576c82ca0cb372a0bebc92ae | p@chr1:46797583..46797614, - |
| 3.76e-24 | FFCP PHASE2:Hg19::chr1:46797583..46797614,-#_bff54df3576c82ca0cb372a0bebc92ae | p@chr1:46797583..46797614, - |
| 7.62e-24 | FFCP PHASE1:Hg19::chr6:94129519..94129544,+#_7571dbf5be948ebf8e3c13cc79764d1e | p@chr6:94129519..94129544, + |
| 7.62e-24 | FFCP PHASE2:Hg19::chr6:94129519..94129544,+#_7571dbf5be948ebf8e3c13cc79764d1e | p@chr6:94129519..94129544, + |
| 8.02e-24 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_e8d9f68c48cbb8670de58bb0d8a6a818 | p@chr2:693380..693398, + |
| 8.02e-24 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_e8d9f68c48cbb8670de58bb0d8a6a818 | p@chr2:693380..693398, + |
| 8.98e-24 | FFCP PHASE1:Hg19::chr2:133426077..133426103,-#_2060da3a3661b25dbd3ad408204aacc3 | p@chr2:133426077..133426103, - |
| 8.98e-24 | FFCP PHASE2:Hg19::chr2:133426077..133426103,-#_2060da3a3661b25dbd3ad408204aacc3 | p@chr2:133426077..133426103, - |
| 1.99e-23 | FFCP PHASE2:Hg19::chr11:32457350..32457361,+#_f1c0c1e57e0037c6ea85f0b71927e0a5 | p5@WT1-AS |
| 1.99e-23 | FFCP PHASE1:Hg19::chr11:32457350..32457361,+#_f1c0c1e57e0037c6ea85f0b71927e0a5 | p5@WT1-AS |
| 4.37e-23 | FFCP PHASE2:Hg19::chr2:176968471..176968476,-#_dddb2f92774814e20a86ad1b2fa0b91c | p@chr2:176968471..176968476, - |
| 4.37e-23 | FFCP PHASE1:Hg19::chr2:176968471..176968476,-#_dddb2f92774814e20a86ad1b2fa0b91c | p@chr2:176968471..176968476, - |
| 4.89e-23 | FFCP PHASE2:Hg19::chr12:15592437..15592438,+#_576e51199a83fa4cad8827f9b050a23b | p1@ENST00000469884 |
| 4.89e-23 | FFCP PHASE1:Hg19::chr12:15592437..15592438,+#_576e51199a83fa4cad8827f9b050a23b | p1@ENST00000469884 |
