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MacroAPE 1083:5-GCGAATA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;355.589;90.104;738.531;426.385!2;1.609;1518.896;86.886;1.609!3;1.609;1.609;1604.173;1.609!4;1475.453;1.609;130.329;1.609!5;1179.397;236.523;...")
 
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11A8;0.773251!10597-108E3;0.00306952!10717-109I6;0.0701237!10455-106G5;0.0580621!10534-107G3;0.0179424!10429-106D6;0.00356777!10464-106H5;0.00843467!10827-111C8;0.00128093!10789-110H6;0.0461196!10828-111C9;0.0888938!10788-110H5;0.136019!10792-110H9;0.00697916!10765-110E9;0.0544263!10829-111D1;0.0426867!10830-111D2;0.118416!10831-111D3;0.117911!10832-111D4;0.0683991!10833-111D5;0.0242096!10764-110E8;0.0297068!10770-110F5;0.153995!10399-106A3;0.0355114!10400-106A4;0.0453634!10405-106A9;0.053723!10834-111D6;0.0339104!10835-111D7;0.0210013!10836-111D8;0.114247!10837-111D9;0.0718605!10699-109G6;0.112128!10802-111A1;0.0985934!10796-110I4;0.0824565!10010-101C1;0.0126826!10810-111A9;0.0120158!10421-106C7;0.0124996!10708-109H6;0.1045!12235-129G3;0.00194751!12236-129G4;0.0439921!12237-129G5;0.498452!10167-103B5;0.0116774!10151-102I7;0.0786245!10428-106D5;0.156689!10795-110I3;0.407101!10805-111A4;0.0410025!10052-101G7;0.00473729!10189-103D9;0.00551352!10589-108D4;0.282378!10425-106D2;0.064523!10427-106D4;0.00285895!10702-109G9;0.04373!10432-106D9;0.0230757!10496-107C1;0.0325892!10718-109I7;0.179363!10011-101C2;0.00773006!10053-101G8;0.000161496!10686-109F2;0.740576!10084-102B3;0.0709598!10012-101C3;0.0473019!10085-102B4;0.0917244!10482-107A5;0.480225!10419-106C5;0.148989!10080-102A8;0.031542!10760-110E4;0.0354414!10709-109H7;0.00119457!10710-109H8;0.0978088!10703-109H1;0.00830912!10719-109I8;0.0111575!10642-109A3;0.182166!10177-103C6;0.0627096!10164-103B2;0.145194!10173-103C2;0.133883!10166-103B4;0.16728!10083-102B2;0.177349!10188-103D8;0.166546!10552-107I3;0.0525626!10553-107I4;0.0370514!10013-101C4;0.0496519!10536-107G5;0.00444634!10618-108G6;0.218783!10423-106C9;0.0341901!10785-110H2;0.00829108!12238-129G6;0.132315!12239-129G7;0.00862782!12240-129G8;0.347326!10416-106C2;0.000840885!10801-110I9;0.0105623!10766-110F1;0.179426!10824-111C5;0.213684!10825-111C6;0.172369!10826-111C7;0.269281!10454-106G4;0.301406!10409-106B4;0.128582!10638-108I8;0.147789!10636-108I6;0.0350221!10513-107D9;0.29499!10420-106C6;0.00668569!10082-102B1;1.16029e-06!10014-101C5;0.0118223!10070-101I7;0.020343!10452-106G2;0.0162264!10453-106G3;0.0244344!10449-106F8;0.00540868!10042-101F6;0.00203966!10069-101I6;0.0643473!10193-103E4;0.0427461!10631-108I1;0.14084!10438-106E6;0.00461155!10488-107B2;0.187084!10196-103E7;0.113539!10071-101I8;0.00124357!10071-101I8;0.0173151!10041-101F5;0.361288!10451-106G1;0.108664!10450-106F9;0.0020024!10604-108F1;0.00506566!10605-108F2;0.130683!10606-108F3;0.732455!10603-108E9;0.327933!10497-107C2;0.123965!10448-106F7;0.0965581!10643-109A4;0.659655!10426-106D3;0.916398!10431-106D8;0.0157499!10197-103E8;0.000916828!10443-106F2;0.0015942!10815-111B5;0.821897!10816-111B6;0.000638796!10817-111B7;0.0010405!10015-101C6;0.000891676!10410-106B5;0.0043781!10054-101G9;0.959773!10758-110E2;0.0376422!10711-109H9;0.00779989!10040-101F4;0.00237252!10470-106I2;0.0942713!10415-106C1;0.00537471!10198-103E9;0.471749!10614-108G2;0.00785092!10612-108F9;0.0185517!10549-107H9;0.184183!10615-108G3;0.0231046!10487-107B1;0.407558!10433-106E1;0.451171!10688-109F4;0.769784!10444-106F3;0.0358441!10444-106F3;0.0448108!10485-107A8;0.0503114!10413-106B8;0.00178608!10175-103C4;0.765345!10161-103A8;0.132535!12131-128D7;0.203971!10624-108H3;0.09099!10712-109I1;0.699056!10205-103F7;0.201974!10206-103F8;0.00242571!10207-103F9;0.00283822!10050-101G5;0.034669!10051-101G6;0.182416!10016-101C7;0.0207676!10046-101G1;0.00420063!10778-110G4;0.0423247!10633-108I3;0.0110826!10818-111B8;0.131736!10819-111B9;0.0101845!10820-111C1;0.0170501!10484-107A7;0.0179537!10808-111A7;0.0984324!10169-103B7;0.134001!10153-102I9;0.112279!13425-144D5;0.119836!13433-144E4;0.0294825!13437-144E8;0.0158116!11904-125F5;0.0414491!11905-125F6;0.745024!10039-101F3;0.998296!10791-110H8;0.0907903!10017-101C8;0.013807!10045-101F9;0.00290631!10509-107D5;0.126595!10839-111E2;0.380852!10692-109F8;0.366143!10079-102A7;0.0160711!10078-102A6;0.00926375!10721-110A1;0.00650171!10569-108B2;0.00589941!10570-108B3;0.0162182!10571-108B4;0.0208203!10647-109A8;0.0756112!10752-110D5;0.0468848!10782-110G8;0.187245!10726-110A6;0.0891024!10018-101C9;0.00782384!10086-102B5;0.0125218!10182-103D2;0.616565!10165-103B3;0.12661!10499-107C4;0.161877!10408-106B3;0.332945!10019-101D1;0.261786!10068-101I5;0.0640754!10075-102A3;0.0219676!10077-102A5;0.0771503!10727-110A7;0.604035!10775-110G1;0.0317703!10412-106B7;0.0259045!12231-129F8;0.00276213!12232-129F9;0.030394!12233-129G1;0.00617942!12234-129G2;0.00493402!10414-106B9;0.00319154!10170-103B8;0.692515!10183-103D3;0.0937399!10150-102I6;0.0894518!10174-103C3;0.114124!10155-103A2;0.0488365!10038-101F2;0.091316!10838-111E1;0.0701005!10759-110E3;0.163387!10514-107E1;0.000502369!10465-106H6;0.807768!10691-109F7;0.976132!10843-111E6;0.01045!10844-111E7;0.0600309!11747-123G1;0.566179!11748-123G2;0.412766!11749-123G3;0.40262!11750-123G4;0.324771!11751-123G5;0.0112825!11840-124H4;0.0388704!11752-123G6;0.0602821!11753-123G7;0.0017252!11754-123G8;0.0108095!11755-123G9;0.335412!11756-123H1;0.33531!11833-124G6;0.724155!11760-123H5;0.20617!11836-124G9;0.986126!11758-123H3;0.409339!11835-124G8;0.627847!11762-123H7;0.043182!11838-124H2;0.00740041!11757-123H2;0.0411038!11759-123H4;0.875999!11761-123H6;0.180699!11842-124H6;0.0748845!11837-124H1;0.0531368!10568-108B1;0.136608!13230-141I8;0.00041785!13231-141I9;0.0648875!10696-109G3;0.11137!10493-107B7;0.853014!10494-107B8;0.0933538!10850-111F4;0.000910774!10851-111F5;8.15755e-05!10852-111F6;0.00223065!10853-111F7;0.548172!10854-111F8;0.0167672!10855-111F9;0.155443!10856-111G1;1.28434e-05!10847-111F1;0.0593404!10846-111E9;0.0596931!10848-111F2;0.000942683!10845-111E8;7.47305e-05!10857-111G2;0.0340118!10858-111G3;0.00267009!10156-103A3;0.00391291!11901-125F2;0.15781!11902-125F3;0.65173!11903-125F4;0.956888!10689-109F5;0.8189!10648-109A9;0.0169665!10784-110H1;0.00324032!10744-110C6;0.195139!10772-110F7;0.00671326!10474-106I6;0.0486555!10600-108E6;0.202754!10684-109E9;0.00750674!12226-129F3;0.693014!12227-129F4;0.832789!10508-107D4;0.283347!10539-107G8;0.374014!10607-108F4;0.190138!10555-107I6;0.0559416!10774-110F9;0.771125!10637-108I7;0.0177868!10663-109C6;0.77602!10728-110A8;0.90087!10729-110A9;0.303535!10430-106D7;0.587758!10730-110B1;0.00255993!10813-111B3;0.940458!10812-111B2;0.0793909!10037-101F1;0.434832!10172-103C1;0.0791342!10163-103B1;0.109373!10076-102A4;0.139271!10073-102A1;0.0960064!10036-101E9;0.391634!10195-103E6;0.115065!10277-104E7;0.0982908!10434-106E2;0.0360028!10550-107I1;0.070614!10545-107H5;0.108987!10544-107H4;0.0035533!10704-109H2;0.0157318!10510-107D6;0.60965!10558-107I9;0.0092439!10020-101D2;0.0250144!10732-110B3;0.000547357!10049-101G4;0.0933266!10698-109G5;0.0225584!10437-106E5;0.0391882!10417-106C3;0.0196361!10035-101E8;0.252762!10171-103B9;0.0906826!10157-103A4;0.0875873!10034-101E7;0.11005!10072-101I9;0.0713202!10199-103F1;0.4032!10200-103F2;0.00463407!10697-109G4;0.0112113!10723-110A3;0.804824!10179-103C8;0.0170889!10160-103A7;0.050246!10180-103C9;0.117882!10162-103A9;0.0128211!10021-101D3;0.0383639!10840-111E3;0.0995954!10706-109H4;0.045008!10033-101E6;0.219314!10032-101E5;0.0789454!10490-107B4;0.0951091!10439-106E7;0.0604339!10022-101D4;0.230345!10176-103C5;0.00251562!10469-106I1;0.0867539!10067-101I4;0.619484!10411-106B6;0.0968016!10471-106I3;0.0108601!10030-101E3;0.393187!10475-106I7;0.0125192!10787-110H4;0.00195307!10477-106I9;0.00249326!10695-109G2;0.17208!11771-123I7;0.0833665!11772-123I8;0.0632314!11773-123I9;0.231536!10093-102C3;0.999036!10442-106F1;0.00795888!10442-106F1;0.517965!10201-103F3;0.478953!10639-108I9;0.00043922!11843-124H7;0.038325!11841-124H5;0.385111!10693-109F9;0.0235999!10436-106E4;0.354357!10483-107A6;0.0717327!10282-104F3;0.0381226!10023-101D5;0.00113403!10066-101I3;0.00601441!10065-101I2;0.231269!10800-110I8;0.0607657!10610-108F7;0.00106896!10841-111E4;0.827082!10541-107H1;0.0956658!10842-111E5;0.191562!10562-108A4;0.0202739!10024-101D6;0.0254509!10064-101I1;0.0390236!10609-108F6;0.270307!10048-101G3;0.299116!10781-110G7;8.67268e-06!10181-103D1;0.488875!10159-103A6;0.0838354!10056-101H2;0.12525!10737-110B8;0.106135!10025-101D7;0.195517!10044-101F8;0.353413!10424-106D1;0.357426!10463-106H4;0.059358!10616-108G4;0.159904!10486-107A9;0.116958!10062-101H8;0.0495935!10202-103F4;0.158775!10158-103A5;0.00174514!10441-106E9;0.115962!10031-101E4;0.0200691!10063-101H9;0.0970476!10063-101H9;0.343118!11763-123H8;0.0257521!11765-123I1;0.611686!11768-123I4;0.262176!10807-111A6;0.291453!10790-110H7;0.0024891!10798-110I6;0.0323338!10786-110H3;0.104108!10591-108D6;0.163005!10593-108D8;0.251326!10590-108D5;0.624711!10026-101D8;0.162907!10096-102C6;0.0393038!10168-103B6;0.527955!10154-103A1;0.173376!10209-103G2;0.17667!10061-101H7;0.0124543!10027-101D9;0.0768312!10043-101F7;0.093172!10783-110G9;0.336789!10028-101E1;0.0442002!10060-101H6;0.00055655!10203-103F5;0.00153259!10059-101H5;0.0796856!10047-101G2;0.0396202!10029-101E2;0.635459!10058-101H4;0.0256451!10418-106C4;0.0350932!10492-107B6;0.0302052!10694-109G1;0.124778!10797-110I5;0.972486!10057-101H3;0.891366!10100-102D1;0.0335683!10055-101H1;0.00820621!10204-103F6;0.0602349!10191-103E2;0.0111829!10563-108A5;0.0310979
|name=5-GCGAATA,CNhs11047,BestGuess:E2F7_f1_HM09(0.650122619017576),T:1609.0(58.47%),B:19244.9(43.39%),P:1e-56
|name=5-GCGAATA,CNhs11047,BestGuess:E2F7_f1_HM09(0.650122619017576),T:1609.0(58.47%),B:19244.9(43.39%),P:1e-56
|tomtom_result=SWI4#MA0401.1;2;0.00155213;0.738814;1;6;GCGAATA;ACGCGAAA;+!mab-3#MA0262.1;6;0.0193269;9.1996;1;7;GCGAATA;AATGTTGCGAATT;+
}}
}}

Latest revision as of 13:13, 7 September 2012

Full Name: 5-GCGAATA,CNhs11047,BestGuess:E2F7_f1_HM09(0.650122619017576),T:1609.0(58.47%),B:19244.9(43.39%),P:1e-56

Motif matrix
POACGT
1355.58990.104738.531426.385
21.6091518.89686.8861.609
31.6091.6091604.1731.609
41475.4531.609130.3291.609
51179.397236.52349.879143.201
6632.3371.6091.609973.445
7827.026183.426262.267336.281

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SWI4#MA0401.120.001552130.73881416GCGAATAACGCGAAA+
mab-3#MA0262.160.01932699.199617GCGAATAAATGTTGCGAATT+
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