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MacroAPE 1083:Motif GATNTC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;1200;0!02;1200;0;0;0!03;0;0;0;1200!04;300;300;300;300!05;0;0;0;1200!06;0;1200;0;0 |macroape_1083_sample_pvalues=11376-118A8;0.221013!1...")
 
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106D6;0.673664!10464-106H5;0.843314!10827-111C8;0.314828!10789-110H6;0.206791!10828-111C9;0.874233!10788-110H5;0.536363!10792-110H9;0.260456!10765-110E9;0.301101!10829-111D1;0.0839256!10830-111D2;0.18773!10831-111D3;0.0812133!10832-111D4;0.367605!10833-111D5;0.214154!10764-110E8;0.110225!10770-110F5;0.225178!10399-106A3;0.191196!10400-106A4;0.655307!10405-106A9;0.421067!10834-111D6;0.534096!10835-111D7;0.184829!10836-111D8;0.453145!10837-111D9;0.00637459!10699-109G6;0.357942!10802-111A1;0.542976!10796-110I4;0.283241!10010-101C1;0.00793433!10810-111A9;0.425746!10421-106C7;0.29017!10708-109H6;0.910639!12235-129G3;0.209086!12236-129G4;0.830352!12237-129G5;0.726767!10167-103B5;0.541987!10151-102I7;0.835776!10428-106D5;0.792035!10795-110I3;0.567811!10805-111A4;0.475656!10052-101G7;0.024751!10189-103D9;0.20213!10589-108D4;0.0736043!10425-106D2;0.417084!10427-106D4;0.385392!10702-109G9;0.944315!10432-106D9;0.654372!10496-107C1;0.809971!10718-109I7;0.167943!10011-101C2;0.184632!10053-101G8;0.0564077!10686-109F2;0.0220713!10084-102B3;0.560959!10012-101C3;0.672841!10085-102B4;0.707567!10482-107A5;0.843679!10419-106C5;0.660941!10080-102A8;0.698054!10760-110E4;0.666346!10709-109H7;0.0136402!10710-109H8;0.123604!10703-109H1;0.285284!10719-109I8;0.562368!10642-109A3;0.145456!10177-103C6;0.828652!10164-103B2;0.792497!10173-103C2;0.881857!10166-103B4;0.581888!10083-102B2;0.568483!10188-103D8;0.571178!10552-107I3;0.746061!10553-107I4;0.109343!10013-101C4;0.057452!10536-107G5;0.261574!10618-108G6;0.384424!10423-106C9;0.0282803!10785-110H2;0.0793645!12238-129G6;0.045815!12239-129G7;0.425741!12240-129G8;0.763128!10416-106C2;0.362474!10801-110I9;0.575459!10766-110F1;0.455646!10824-111C5;0.296097!10825-111C6;0.292773!10826-111C7;0.35856!10454-106G4;0.357807!10409-106B4;0.397468!10638-108I8;0.711494!10636-108I6;0.454342!10513-107D9;0.201248!10420-106C6;0.0438659!10082-102B1;0.0745836!10014-101C5;0.336813!10070-101I7;0.144346!10452-106G2;0.0915171!10453-106G3;0.972592!10449-106F8;0.56357!10042-101F6;0.652546!10069-101I6;0.712639!10193-103E4;0.307502!10631-108I1;0.812329!10438-106E6;0.804551!10488-107B2;0.0200093!10196-103E7;0.169354!10071-101I8;0.946072!10071-101I8;0.430441!10041-101F5;0.754165!10451-106G1;0.204128!10450-106F9;0.631369!10604-108F1;0.332825!10605-108F2;0.175915!10606-108F3;0.407925!10603-108E9;0.161542!10497-107C2;0.0943987!10448-106F7;0.0118613!10643-109A4;0.84913!10426-106D3;0.256373!10431-106D8;0.0671325!10197-103E8;0.145626!10443-106F2;0.647112!10815-111B5;0.253287!10816-111B6;0.230778!10817-111B7;0.302802!10015-101C6;0.209233!10410-106B5;0.602536!10054-101G9;0.257696!10758-110E2;0.903341!10711-109H9;0.615694!10040-101F4;0.656005!10470-106I2;0.635546!10415-106C1;0.177182!10198-103E9;0.458435!10614-108G2;0.268175!10612-108F9;0.546518!10549-107H9;0.0546033!10615-108G3;0.113921!10487-107B1;0.304817!10433-106E1;0.380101!10688-109F4;0.191514!10444-106F3;0.115517!10444-106F3;0.753859!10485-107A8;0.780581!10413-106B8;0.233528!10175-103C4;0.428187!10161-103A8;0.689777!12131-128D7;0.525883!10624-108H3;0.949293!10712-109I1;0.66516!10205-103F7;0.978289!10206-103F8;0.470056!10207-103F9;0.478407!10050-101G5;0.3815!10051-101G6;0.498977!10016-101C7;0.574344!10046-101G1;0.535459!10778-110G4;0.745417!10633-108I3;0.268326!10818-111B8;0.142777!10819-111B9;0.235234!10820-111C1;0.255171!10484-107A7;0.205893!10808-111A7;0.310198!10169-103B7;0.533042!10153-102I9;0.782513!13425-144D5;0.77836!13433-144E4;0.399871!13437-144E8;0.464399!11904-125F5;0.559538!11905-125F6;0.0974736!10039-101F3;0.326032!10791-110H8;0.710255!10017-101C8;0.017229!10045-101F9;0.836248!10509-107D5;0.98746!10839-111E2;0.404819!10692-109F8;0.783794!10079-102A7;0.0623494!10078-102A6;0.559565!10721-110A1;0.458221!10569-108B2;0.101601!10570-108B3;0.700555!10571-108B4;0.699338!10647-109A8;0.600864!10752-110D5;0.658418!10782-110G8;0.510552!10726-110A6;0.618814!10018-101C9;0.505816!10086-102B5;0.648641!10182-103D2;0.967029!10165-103B3;0.685756!10499-107C4;0.692168!10408-106B3;0.25965!10019-101D1;0.0293155!10068-101I5;0.447291!10075-102A3;0.579012!10077-102A5;0.493747!10727-110A7;0.0574954!10775-110G1;0.486343!10412-106B7;0.976193!12231-129F8;0.246998!12232-129F9;0.145545!12233-129G1;0.0277452!12234-129G2;0.111916!10414-106B9;0.172668!10170-103B8;0.155298!10183-103D3;0.638388!10150-102I6;0.650318!10174-103C3;0.640431!10155-103A2;0.814261!10038-101F2;0.857492!10838-111E1;0.677784!10759-110E3;0.435112!10514-107E1;0.20499!10465-106H6;0.308216!10691-109F7;0.420929!10843-111E6;0.506078!10844-111E7;0.743695!11747-123G1;0.613664!11748-123G2;0.86926!11749-123G3;0.850587!11750-123G4;0.867113!11751-123G5;0.825038!11840-124H4;0.796502!11752-123G6;0.862266!11753-123G7;0.692133!11754-123G8;0.606009!11755-123G9;0.394017!11756-123H1;0.42261!11833-124G6;0.288005!11760-123H5;0.762011!11836-124G9;0.486368!11758-123H3;0.576392!11835-124G8;0.951163!11762-123H7;0.322132!11838-124H2;0.432227!11757-123H2;0.434051!11759-123H4;0.82009!11761-123H6;0.356411!11842-124H6;0.611555!11837-124H1;0.429983!10568-108B1;0.146311!13230-141I8;0.783291!13231-141I9;0.635776!10696-109G3;0.821629!10493-107B7;0.100691!10494-107B8;0.733999!10850-111F4;0.321316!10851-111F5;0.167081!10852-111F6;0.461954!10853-111F7;0.248312!10854-111F8;0.242375!10855-111F9;0.215084!10856-111G1;0.969463!10847-111F1;0.378954!10846-111E9;0.244998!10848-111F2;0.312613!10845-111E8;0.559713!10857-111G2;0.591095!10858-111G3;0.0869159!10156-103A3;0.124965!11901-125F2;0.695932!11902-125F3;0.106539!11903-125F4;0.367402!10689-109F5;0.212979!10648-109A9;0.5852!10784-110H1;0.0377531!10744-110C6;0.163602!10772-110F7;0.788223!10474-106I6;0.1736!10600-108E6;0.536068!10684-109E9;0.0187216!12226-129F3;0.515161!12227-129F4;0.0467677!10508-107D4;0.949592!10539-107G8;0.913793!10607-108F4;0.837033!10555-107I6;0.0949255!10774-110F9;0.987909!10637-108I7;0.0373891!10663-109C6;0.319209!10728-110A8;0.0973582!10729-110A9;0.0315388!10430-106D7;0.865843!10730-110B1;0.49193!10813-111B3;0.793891!10812-111B2;0.583271!10037-101F1;0.931607!10172-103C1;0.743463!10163-103B1;0.609846!10076-102A4;0.586856!10073-102A1;0.721166!10036-101E9;0.703487!10195-103E6;0.698156!10277-104E7;0.66023!10434-106E2;0.521819!10550-107I1;0.00450974!10545-107H5;0.0463772!10544-107H4;0.0250846!10704-109H2;0.339313!10510-107D6;0.460157!10558-107I9;0.852852!10020-101D2;0.583762!10732-110B3;0.0806591!10049-101G4;0.329919!10698-109G5;0.878072!10437-106E5;0.0579536!10417-106C3;0.779524!10035-101E8;0.148109!10171-103B9;0.707894!10157-103A4;0.62263!10034-101E7;0.60188!10072-101I9;0.702575!10199-103F1;0.881936!10200-103F2;0.788298!10697-109G4;0.440221!10723-110A3;0.78668!10179-103C8;0.0409668!10160-103A7;0.640804!10180-103C9;0.483921!10162-103A9;0.94015!10021-101D3;0.970916!10840-111E3;0.455873!10706-109H4;0.700025!10033-101E6;0.859302!10032-101E5;0.692928!10490-107B4;0.696832!10439-106E7;0.276745!10022-101D4;0.19012!10176-103C5;0.317264!10469-106I1;0.800256!10067-101I4;0.296664!10411-106B6;0.399706!10471-106I3;0.178665!10030-101E3;0.840245!10475-106I7;0.77737!10787-110H4;0.661454!10477-106I9;0.174524!10695-109G2;0.411581!11771-123I7;0.513064!11772-123I8;0.00983621!11773-123I9;0.017198!10093-102C3;0.0664462!10442-106F1;0.740542!10442-106F1;0.980618!10201-103F3;0.905608!10639-108I9;0.472009!11843-124H7;0.860335!11841-124H5;0.409745!10693-109F9;0.0257357!10436-106E4;0.149243!10483-107A6;0.0335814!10282-104F3;0.0991392!10023-101D5;0.822154!10066-101I3;0.944887!10065-101I2;0.763512!10800-110I8;0.934352!10610-108F7;0.450402!10841-111E4;0.229355!10541-107H1;0.362401!10842-111E5;0.49508!10562-108A4;0.817583!10024-101D6;0.903454!10064-101I1;0.180532!10609-108F6;0.529646!10048-101G3;0.510355!10781-110G7;0.051091!10181-103D1;0.935315!10159-103A6;0.674335!10056-101H2;0.735775!10737-110B8;0.888206!10025-101D7;0.94554!10044-101F8;0.0466473!10424-106D1;0.191336!10463-106H4;0.841935!10616-108G4;0.22531!10486-107A9;0.0546396!10062-101H8;0.458841!10202-103F4;0.636434!10158-103A5;0.831382!10441-106E9;0.544634!10031-101E4;0.45365!10063-101H9;0.752401!10063-101H9;0.764259!11763-123H8;0.353205!11765-123I1;0.659549!11768-123I4;0.903388!10807-111A6;0.875044!10790-110H7;0.410653!10798-110I6;0.131651!10786-110H3;0.356341!10591-108D6;0.145211!10593-108D8;0.290543!10590-108D5;0.576634!10026-101D8;0.255366!10096-102C6;0.808902!10168-103B6;0.482133!10154-103A1;0.606956!10209-103G2;0.681604!10061-101H7;0.965094!10027-101D9;0.881392!10043-101F7;0.949602!10783-110G9;0.934986!10028-101E1;0.453377!10060-101H6;0.791906!10203-103F5;0.71479!10059-101H5;0.859011!10047-101G2;0.788477!10029-101E2;0.752408!10058-101H4;0.989103!10418-106C4;0.752307!10492-107B6;0.032128!10694-109G1;0.298191!10797-110I5;0.748277!10057-101H3;0.271659!10100-102D1;0.815932!10055-101H1;0.178227!10204-103F6;0.433664!10191-103E2;0.200356!10563-108A5;0.380554
|name=motif_GATNTC
|name=motif_GATNTC
|tomtom_result=SPT23#MA0388.1;2;0.00542099;2.58039;1;6;GATATC;TTGATTTC;-!SRD1#MA0389.1;1;0.0109912;5.2318;1;6;GATATC;AGATCTAC;+!dl_2#MA0023.1;3;0.011365;5.40974;1;6;GATATC;GGGGATTTCC;+!YRM1#MA0438.1;-1;0.0182851;8.70372;1;5;GATATC;ATTTCCGT;-
}}
}}

Latest revision as of 13:24, 7 September 2012

Full Name: motif_GATNTC

Motif matrix
POACGT
010012000
021200000
030001200
04300300300300
050001200
060120000

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SPT23#MA0388.120.005420992.5803916GATATCTTGATTTC-
SRD1#MA0389.110.01099125.231816GATATCAGATCTAC+
dl_2#MA0023.130.0113655.4097416GATATCGGGGATTTCC+
YRM1#MA0438.1-10.01828518.7037215GATATCATTTCCGT-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:Motif_GATNTC&oldid=2133988"