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MacroAPE 1083:3-MASTTCCCCTTW: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;80.229;60.489;0.141;0.141!2;109.416;0.141;0.141;31.302!3;19.176;56.964;64.86;0.141!4;0.141;0.141;0.141;140.577!5;0.141;0.141;0.141;140.577!6...")
 
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-129A1;0.424985!12180-129A2;1.87137e-06!12181-129A3;7.91929e-06!12176-128I7;2.57755e-06!12177-128I8;1.71817e-05!12182-129A4;7.40801e-06!12183-129A5;3.48938e-05!12184-129A6;1.4361e-05!10809-111A8;5.44631e-06!10597-108E3;0.30466!10717-109I6;0.262994!10455-106G5;0.444754!10534-107G3;0.111263!10429-106D6;0.328316!10464-106H5;0.606109!10827-111C8;0.346314!10789-110H6;0.15144!10828-111C9;0.133736!10788-110H5;0.839677!10792-110H9;0.560272!10765-110E9;0.588043!10829-111D1;0.379326!10830-111D2;0.575792!10831-111D3;0.574117!10832-111D4;0.595385!10833-111D5;0.0875866!10764-110E8;0.182234!10770-110F5;0.309403!10399-106A3;0.281608!10400-106A4;0.131291!10405-106A9;0.0818322!10834-111D6;0.144762!10835-111D7;0.575012!10836-111D8;0.0858733!10837-111D9;0.663988!10699-109G6;0.264534!10802-111A1;0.718287!10796-110I4;0.72249!10010-101C1;0.245935!10810-111A9;0.560537!10421-106C7;0.117924!10708-109H6;0.708333!12235-129G3;0.000837039!12236-129G4;0.418029!12237-129G5;0.527621!10167-103B5;0.253058!10151-102I7;0.0231588!10428-106D5;0.120155!10795-110I3;0.0533207!10805-111A4;0.74378!10052-101G7;0.0305385!10189-103D9;0.971242!10589-108D4;0.0654865!10425-106D2;0.237887!10427-106D4;0.172357!10702-109G9;0.00301487!10432-106D9;0.471346!10496-107C1;0.89277!10718-109I7;0.768632!10011-101C2;0.200474!10053-101G8;0.930484!10686-109F2;9.08135e-05!10084-102B3;0.0951566!10012-101C3;0.00364657!10085-102B4;0.0296894!10482-107A5;4.01515e-07!10419-106C5;0.482627!10080-102A8;0.834805!10760-110E4;0.781097!10709-109H7;0.00210082!10710-109H8;0.141905!10703-109H1;0.199485!10719-109I8;0.0380215!10642-109A3;0.00385618!10177-103C6;0.00495048!10164-103B2;0.0448249!10173-103C2;0.0479091!10166-103B4;0.00345124!10083-102B2;0.0199427!10188-103D8;0.000499645!10552-107I3;0.00787191!10553-107I4;0.676712!10013-101C4;0.864484!10536-107G5;0.640321!10618-108G6;0.340752!10423-106C9;0.916827!10785-110H2;0.753497!12238-129G6;0.657818!12239-129G7;0.766831!12240-129G8;0.758316!10416-106C2;0.0925027!10801-110I9;0.650723!10766-110F1;0.917149!10824-111C5;0.31774!10825-111C6;0.11589!10826-111C7;0.0714896!10454-106G4;0.0954932!10409-106B4;0.256071!10638-108I8;0.332951!10636-108I6;0.112158!10513-107D9;0.303362!10420-106C6;0.292996!10082-102B1;0.045975!10014-101C5;0.0655168!10070-101I7;0.209549!10452-106G2;0.241474!10453-106G3;0.3103!10449-106F8;0.523856!10042-101F6;0.676226!10069-101I6;0.115933!10193-103E4;0.372578!10631-108I1;0.0126023!10438-106E6;0.322734!10488-107B2;0.262563!10196-103E7;0.269469!10071-101I8;0.399118!10071-101I8;0.78516!10041-101F5;4.20018e-06!10451-106G1;0.605847!10450-106F9;0.381058!10604-108F1;0.227581!10605-108F2;0.0240472!10606-108F3;0.113003!10603-108E9;0.00657784!10497-107C2;0.00139472!10448-106F7;0.314217!10643-109A4;0.220424!10426-106D3;0.290274!10431-106D8;0.24118!10197-103E8;0.274422!10443-106F2;0.487224!10815-111B5;0.109781!10816-111B6;0.338289!10817-111B7;0.228026!10015-101C6;0.323152!10410-106B5;0.897436!10054-101G9;0.69467!10758-110E2;0.10205!10711-109H9;0.734368!10040-101F4;0.847168!10470-106I2;0.0123864!10415-106C1;0.121671!10198-103E9;0.727645!10614-108G2;0.732762!10612-108F9;0.856862!10549-107H9;0.012867!10615-108G3;0.0749012!10487-107B1;0.0189719!10433-106E1;0.430068!10688-109F4;0.174705!10444-106F3;0.110651!10444-106F3;0.396698!10485-107A8;0.463802!10413-106B8;0.0311075!10175-103C4;0.295683!10161-103A8;0.0101928!12131-128D7;0.288248!10624-108H3;0.127053!10712-109I1;0.131838!10205-103F7;0.177309!10206-103F8;0.959291!10207-103F9;0.465369!10050-101G5;0.98103!10051-101G6;0.0515073!10016-101C7;0.103074!10046-101G1;0.758597!10778-110G4;0.566336!10633-108I3;0.417567!10818-111B8;0.05601!10819-111B9;0.261802!10820-111C1;0.369336!10484-107A7;0.372334!10808-111A7;0.0154215!10169-103B7;0.132532!10153-102I9;0.03101!13425-144D5;0.0914085!13433-144E4;0.03538!13437-144E8;0.00538621!11904-125F5;0.00671872!11905-125F6;0.000212058!10039-101F3;0.000943975!10791-110H8;0.0147652!10017-101C8;0.428627!10045-101F9;0.856995!10509-107D5;0.123217!10839-111E2;0.45725!10692-109F8;0.307408!10079-102A7;0.0742552!10078-102A6;0.966084!10721-110A1;0.564128!10569-108B2;0.31002!10570-108B3;0.441294!10571-108B4;0.471076!10647-109A8;0.166713!10752-110D5;0.814027!10782-110G8;0.690128!10726-110A6;0.757876!10018-101C9;0.517533!10086-102B5;0.292549!10182-103D2;0.514966!10165-103B3;0.107776!10499-107C4;0.148286!10408-106B3;0.0918759!10019-101D1;0.550189!10068-101I5;0.328487!10075-102A3;0.735168!10077-102A5;0.408973!10727-110A7;0.00520654!10775-110G1;0.41702!10412-106B7;0.0853176!12231-129F8;0.099205!12232-129F9;0.781165!12233-129G1;0.866073!12234-129G2;0.637826!10414-106B9;0.534919!10170-103B8;0.00682168!10183-103D3;0.0120043!10150-102I6;0.00969735!10174-103C3;0.105307!10155-103A2;0.166793!10038-101F2;0.455939!10838-111E1;0.171182!10759-110E3;0.0062798!10514-107E1;0.837371!10465-106H6;0.129401!10691-109F7;0.0809309!10843-111E6;0.73442!10844-111E7;0.0181589!11747-123G1;0.00484604!11748-123G2;0.414508!11749-123G3;0.939776!11750-123G4;0.699798!11751-123G5;0.975557!11840-124H4;0.635942!11752-123G6;0.860827!11753-123G7;0.741168!11754-123G8;0.618343!11755-123G9;0.961678!11756-123H1;0.726186!11833-124G6;0.976715!11760-123H5;0.717439!11836-124G9;0.905411!11758-123H3;0.800435!11835-124G8;0.700884!11762-123H7;0.791198!11838-124H2;0.539932!11757-123H2;0.446505!11759-123H4;0.611646!11761-123H6;0.581743!11842-124H6;0.844516!11837-124H1;0.939053!10568-108B1;0.794359!13230-141I8;0.262851!13231-141I9;0.0982854!10696-109G3;0.173355!10493-107B7;0.171616!10494-107B8;0.19673!10850-111F4;0.00131139!10851-111F5;0.183841!10852-111F6;0.111729!10853-111F7;0.0428552!10854-111F8;0.156615!10855-111F9;0.361436!10856-111G1;0.222933!10847-111F1;0.0493847!10846-111E9;0.15565!10848-111F2;0.98659!10845-111E8;0.691007!10857-111G2;0.016241!10858-111G3;0.374232!10156-103A3;0.199879!11901-125F2;0.101903!11902-125F3;0.000661429!11903-125F4;0.00378069!10689-109F5;0.000671246!10648-109A9;0.233229!10784-110H1;0.745354!10744-110C6;0.146547!10772-110F7;0.0855532!10474-106I6;0.501441!10600-108E6;0.0204273!10684-109E9;0.024117!12226-129F3;0.80973!12227-129F4;0.735628!10508-107D4;0.981596!10539-107G8;0.0486403!10607-108F4;0.00232103!10555-107I6;0.0225068!10774-110F9;0.00379601!10637-108I7;0.128778!10663-109C6;0.416113!10728-110A8;0.0722585!10729-110A9;0.209217!10430-106D7;0.549006!10730-110B1;0.356799!10813-111B3;0.00312695!10812-111B2;0.59324!10037-101F1;0.28581!10172-103C1;0.0114878!10163-103B1;0.00102541!10076-102A4;0.108599!10073-102A1;0.00568776!10036-101E9;9.65948e-06!10195-103E6;0.00120131!10277-104E7;0.0162008!10434-106E2;0.0181381!10550-107I1;0.96294!10545-107H5;0.267941!10544-107H4;0.518549!10704-109H2;0.691271!10510-107D6;0.533558!10558-107I9;0.44149!10020-101D2;0.617129!10732-110B3;0.71725!10049-101G4;0.559399!10698-109G5;0.0574189!10437-106E5;0.701632!10417-106C3;0.64838!10035-101E8;0.505614!10171-103B9;0.00782405!10157-103A4;0.0195728!10034-101E7;0.106685!10072-101I9;0.00844233!10199-103F1;2.56028e-05!10200-103F2;0.979434!10697-109G4;0.494!10723-110A3;0.0732563!10179-103C8;0.990212!10160-103A7;0.0035474!10180-103C9;0.00618897!10162-103A9;0.00995775!10021-101D3;0.153818!10840-111E3;0.340736!10706-109H4;0.0304759!10033-101E6;0.516325!10032-101E5;0.046595!10490-107B4;0.00366122!10439-106E7;0.5087!10022-101D4;0.220576!10176-103C5;0.903061!10469-106I1;0.0113597!10067-101I4;0.0152692!10411-106B6;0.100147!10471-106I3;0.596197!10030-101E3;0.092344!10475-106I7;0.209032!10787-110H4;0.00280309!10477-106I9;0.221199!10695-109G2;0.00078742!11771-123I7;0.318211!11772-123I8;0.450542!11773-123I9;0.746804!10093-102C3;0.622166!10442-106F1;0.961554!10442-106F1;0.615895!10201-103F3;0.963895!10639-108I9;0.656586!11843-124H7;0.227678!11841-124H5;0.507763!10693-109F9;0.125934!10436-106E4;0.965253!10483-107A6;0.0482368!10282-104F3;0.0208809!10023-101D5;0.35298!10066-101I3;0.326072!10065-101I2;0.0199746!10800-110I8;0.179685!10610-108F7;0.000308478!10841-111E4;0.0465577!10541-107H1;0.96279!10842-111E5;0.000122352!10562-108A4;0.000351828!10024-101D6;0.0001288!10064-101I1;0.661021!10609-108F6;0.290486!10048-101G3;0.000888414!10781-110G7;0.843644!10181-103D1;0.000144331!10159-103A6;0.351469!10056-101H2;0.920878!10737-110B8;0.00446984!10025-101D7;0.998197!10044-101F8;0.00441282!10424-106D1;0.0452657!10463-106H4;0.00380914!10616-108G4;0.675493!10486-107A9;0.500958!10062-101H8;0.155619!10202-103F4;0.39662!10158-103A5;0.660205!10441-106E9;0.491193!10031-101E4;0.0600662!10063-101H9;0.00334359!10063-101H9;1.92143e-05!11763-123H8;0.398376!11765-123I1;0.491385!11768-123I4;0.330034!10807-111A6;0.27823!10790-110H7;0.0298775!10798-110I6;0.0247739!10786-110H3;0.026618!10591-108D6;0.248414!10593-108D8;0.0476185!10590-108D5;0.058321!10026-101D8;0.00778903!10096-102C6;0.151781!10168-103B6;0.000306519!10154-103A1;0.107027!10209-103G2;0.150844!10061-101H7;0.883758!10027-101D9;0.105773!10043-101F7;0.113055!10783-110G9;0.0158953!10028-101E1;0.5525!10060-101H6;0.45249!10203-103F5;0.138605!10059-101H5;0.746756!10047-101G2;0.0815184!10029-101E2;0.0575613!10058-101H4;0.709584!10418-106C4;0.195562!10492-107B6;0.858871!10694-109G1;0.504706!10797-110I5;0.949987!10057-101H3;0.0136027!10100-102D1;0.0712665!10055-101H1;0.549684!10204-103F6;0.114113!10191-103E2;0.680722!10563-108A5;0.242089
|name=3-MASTTCCCCTTW,CNhs11673,BestGuess:NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq/Homer(0.739349270844042),T:141.0(4.14%),B:616.2(1.34%),P:1e-29
|name=3-MASTTCCCCTTW,CNhs11673,BestGuess:NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq/Homer(0.739349270844042),T:141.0(4.14%),B:616.2(1.34%),P:1e-29
|tomtom_result=SPI1#MA0080.2;-2;0.00100134;0.476638;0.811701;6;AAGTTCCCCTTA;CTTCCG;-!SPI1#MA0080.2;-1;0.00362538;1.72568;0.811701;7;AAGTTCCCCTTA;ACTTCCT;-!MZF1_5-13#MA0057.1;-3;0.00415742;1.97893;0.811701;9;AAGTTCCCCTTA;TTCCCCCTAC;-!id1#MA0120.1;-3;0.00440172;2.09522;0.811701;9;AAGTTCCCCTTA;TTTTCCTTTTCG;+!STAT1#MA0137.1;0;0.00454865;2.16516;0.811701;12;AAGTTCCCCTTA;CAGTTTCATTTTCC;-!squamosa#MA0082.1;-2;0.00511706;2.43572;0.811701;10;AAGTTCCCCTTA;ATTTCCATTTTTGG;-!Klf4#MA0039.1;-1;0.00628837;2.99326;0.855001;10;AAGTTCCCCTTA;CCTTCCTTTA;-!RELA#MA0107.1;2;0.0104658;4.98174;0.961545;8;AAGTTCCCCTTA;GGAAATTCCC;-!NF-kappaB#MA0061.1;2;0.0116806;5.55998;0.961545;8;AAGTTCCCCTTA;GGAAATTCCC;-!MZF1_1-4#MA0056.1;-4;0.0133731;6.36561;0.961545;6;AAGTTCCCCTTA;TCCCCA;-!SPIB#MA0081.1;-3;0.0137473;6.5437;0.961545;7;AAGTTCCCCTTA;TTCCTCT;-!USV1#MA0413.1;0;0.0154405;7.34966;0.961545;12;AAGTTCCCCTTA;AAATTCCCCCTGAATTTGTG;+!IRF1#MA0050.1;-1;0.015776;7.5094;0.961545;11;AAGTTCCCCTTA;GGTTTCACTTTC;-!Spz1#MA0111.1;1;0.0162061;7.71409;0.961545;10;AAGTTCCCCTTA;GCTGTTACCCT;-!Pax4#MA0068.1;3;0.0165354;7.87084;0.961545;12;AAGTTCCCCTTA;GAAAAATTTCCCATACTCCACTCCCCCCCC;+!znf143#MA0088.1;0;0.0171748;8.17521;0.961545;12;AAGTTCCCCTTA;GATTTCCCATAATGCCTTGC;+!GIS1#MA0306.1;-4;0.0203953;9.70817;0.992996;8;AAGTTCCCCTTA;ACCCCTAAA;+
}}
}}

Latest revision as of 14:07, 7 September 2012

Full Name: 3-MASTTCCCCTTW,CNhs11673,BestGuess:NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq/Homer(0.739349270844042),T:141.0(4.14%),B:616.2(1.34%),P:1e-29

Motif matrix
POACGT
180.22960.4890.1410.141
2109.4160.1410.14131.302
319.17656.96464.860.141
40.1410.1410.141140.577
50.1410.1410.141140.577
60.14185.4460.14155.272
70.141140.5770.1410.141
80.141140.5770.1410.141
944.69766.8340.14129.328
100.14150.05515.93374.871
1150.760.1410.14189.958
1271.3460.1410.14169.372

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SPI1#MA0080.2-20.001001340.4766380.8117016AAGTTCCCCTTACTTCCG-
SPI1#MA0080.2-10.003625381.725680.8117017AAGTTCCCCTTAACTTCCT-
MZF1_5-13#MA0057.1-30.004157421.978930.8117019AAGTTCCCCTTATTCCCCCTAC-
id1#MA0120.1-30.004401722.095220.8117019AAGTTCCCCTTATTTTCCTTTTCG+
STAT1#MA0137.100.004548652.165160.81170112AAGTTCCCCTTACAGTTTCATTTTCC-
squamosa#MA0082.1-20.005117062.435720.81170110AAGTTCCCCTTAATTTCCATTTTTGG-
Klf4#MA0039.1-10.006288372.993260.85500110AAGTTCCCCTTACCTTCCTTTA-
RELA#MA0107.120.01046584.981740.9615458AAGTTCCCCTTAGGAAATTCCC-
NF-kappaB#MA0061.120.01168065.559980.9615458AAGTTCCCCTTAGGAAATTCCC-
MZF1_1-4#MA0056.1-40.01337316.365610.9615456AAGTTCCCCTTATCCCCA-
SPIB#MA0081.1-30.01374736.54370.9615457AAGTTCCCCTTATTCCTCT-
USV1#MA0413.100.01544057.349660.96154512AAGTTCCCCTTAAAATTCCCCCTGAATTTGTG+
IRF1#MA0050.1-10.0157767.50940.96154511AAGTTCCCCTTAGGTTTCACTTTC-
Spz1#MA0111.110.01620617.714090.96154510AAGTTCCCCTTAGCTGTTACCCT-
Pax4#MA0068.130.01653547.870840.96154512AAGTTCCCCTTAGAAAAATTTCCCATACTCCACTCCCCCCCC+
znf143#MA0088.100.01717488.175210.96154512AAGTTCCCCTTAGATTTCCCATAATGCCTTGC+
GIS1#MA0306.1-40.02039539.708170.9929968AAGTTCCCCTTAACCCCTAAA+
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