Personal tools

MCL coexpression mm9:349: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0004866;endopeptidase inhibitor activity;0.00155390727746792;78609,13013,268591!GO:0030414;protease inhibitor activity;0.0...")
 
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0004866;endopeptidase inhibitor activity;0.00155390727746792;78609,13013,268591!GO:0030414;protease inhibitor activity;0.00155390727746792;78609,13013,268591!GO:0004869;cysteine protease inhibitor activity;0.00216860408760358;78609,13013!GO:0004857;enzyme inhibitor activity;0.00216860408760358;78609,13013,268591!GO:0046655;folic acid metabolic process;0.00999287788308772;14275!GO:0005615;extracellular space;0.0117082944214759;78609,13013,268591,14275,14230!GO:0044421;extracellular region part;0.013191880929217;78609,13013,268591,14275,14230!GO:0006620;posttranslational protein targeting to membrane;0.0187294609469804;14275!GO:0008517;folic acid transporter activity;0.0221936232131417;14275!GO:0051183;vitamin transporter activity;0.0349348537543064;14275!GO:0051184;cofactor transporter activity;0.0362889929932853;14275!GO:0005542;folic acid binding;0.0415651954327155;14275!GO:0006760;folic acid and derivative metabolic process;0.0421965688191756;14275!GO:0042558;pteridine and derivative metabolic process;0.0462888715449998;14275!}}
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.028722054472099,-0.00598982249389565,-0.0104055178790152,-0.012591743677216,-0.0178083708922731,-0.000989963497306501,-0.00317920083974438,-0.00151196388777531,-0.004092604146228,-0.0178083708922731,-0.0061816827538484,-0.00810581622586167,-0.014688764784039,-0.0144995093404533,0.00954585311377478,0.0193226718084658,0.00313135466435405,-0.00526102975180285,-0.00622291153828697,-0.0108252431713246,0.540258268137864,-0.00224422344304133,-0.00180468002347124,-0.00165931896002216,-0.00627665416252072,0.00624602877965415,0.00672514165412242,-0.006882604674278,0.0124759564989438,0.00356024624204947,-0.00594808637635557,-0.00810264795987779,0.0105811675451194,-0.0178083708922731,-0.00379799639478353,0.00231873976954488,0.00839067161140226,-0.00400482323447844,-0.00641083975218677,-0.00949704239000232,-0.00245603981283573,-0.00753128665992713,0.00774608103478095,-0.00011842702404455,0.00272994525589799,0.00550958763168741,-0.0178083708922731,0.0222531189001741,0.0107372878371206,-0.00133212179170396,0.00144513252349793,0.026520113117216,-0.00171205528955,-0.0178083708922731,-0.00193919150115848,0.00067867590959945,-0.0128346854833047,0.0183812783975219,0.00630065187328083,0.00482101485047076,0.00157410540594995,-0.00089652371332309,-0.0178083708922731,-0.0104741443484319,-0.0178083708922731,-0.0178083708922731,0.0092912599996479,0.0134056264044107,0.00895586400599491,0.00242865380553892,0.00117397405017081,0.0205091083350507,0.0158872601998116,0.0160784743312345,-0.000109405772489327,0.0211935176172713,-0.00315114914067436,0.0215887994104277,0.028173807563129,-0.00122934399858761,0.016327808737254,0.00442188226113914,0.0239644762758454,0.0379769015576344,0.0156561021286592,0.0282770153829744,0.0355609397654979,0.0357319249375268,0.0160785757811942,0.0187187574196004,-0.000431495076333778,0.00195091280554886,-0.0178083708922731,0.00775122138318494,-0.0178083708922731,-0.0178083708922731,0.147323560964868,0.00160261720724085,-0.001288254058401,-0.011835335360824,0.0210533886301736,-0.0178083708922731,-0.0178083708922731,-0.0178083708922731,0.00304139812204253,0.00935433559287282,-0.0178083708922731,0.192446450695466,-0.00502471043834146,0.0147062116203954,0.0723554569289766,0.0487702113092901,0.0683134812979569,0.0778963457630317,0.296801790704836,0.0377151897648053,0.0638811534435452,0.00389661043416418,0.00229879422853741,0.0058483986975289,0.00584907555505221,0.0212120766933343,-0.0178083708922731,-0.00766974430494305,0.00699635164594223,0.00423635780124164,0.00194421651547108,-0.00224544925410041,-0.00332009080117357,0.0125766023650724,-0.0103716098443546,0.0143916090953956,0.00814591415303879,-0.00515930083510626,0.0259881814317544,0.00567757783532605,0.106178461253434,0.00580095178570124,0.0782324425093513,0.00420682305193434,0.0351439459380957,0.00929469980481406,0.0215392817010589,0.019565704372441,0.0236926309438761,0.0155660669019207,0.0241877774250362,0.0135313293938525,0.00873127473590482,0.00644924108459954,0.0244219221854258,0.0045957394884734,0.00289475926294361,-0.00601099572557856,0.00175920541904769,0.40546297019441,0.00319289735683348,0.000683507641706318,0.00324583856144971,0.0328562665217757,0.0198609557321096,0.0377848686553336,0.0428370480219437,0.0355634879304045,0.0535551675944168,0.0501128576672029,0.0502793797826493,0.045138116910477,0.0581136580920995,0.04732634536674,0.0373568309311972,0.055472701294918,0.0531628554690677,0.0408870600699274,0.0250264600824933,0.0195007762391009,0.00222137087600628,0.00210275962569593,0.0363863907039413,0.0507281689978367,0.00778848773884947,0.00547527502870494,0.00350847531975789,0.00796889814682072,0.0163707469215047,0.0104077540219473,0.0212676759239762,0.037008218031272,0.00710467533811558,0.0151586885336573,0.019909429100391,0.0374721823167121,0.0332430075435801,0.0457474127196688,0.0113550953805602,0.0803365628384844,0.112978581137429,0.0936808417512546,0.0757375466352358,0.0331629824239074,0.0570423154648036,0.0442296704799565,-0.00524863318472969,0.00597786168829812,0.00224916139449307,0.0130420589855978,0.0042888152757647,-0.0100378243822361,-0.0178083708922731,-0.00782533516547602,0.0152346140394076,0.00519927238551232,-0.000218504432710136,0.0041567812061691,0.00248702839612345,0.0138926824650946,-0.0112938098910821,-0.0022649021238328,-0.0116009136236274,0.0253675190168161,0.00787243394378553,0.0218089623214598,0.0148148536415767,0.00468558652293794,0.0115144743603056,0.00413707622289489,0.013283399436033,0.0212544457506976,0.0157506146148574,0.0056314034558017,-0.00295087914532786,0.00733967074782925,-0.0178083708922731,-0.0178083708922731,-0.00991290717351092,-0.0178083708922731,0.0152260225896713,0.0205254540108871,0.0119026152577563,0.0246839005568935,0.00796241325249114,9.09884256300314e-05,0.00369408788140164,0.00907663211847394,0.0136462015390687,0.0120870431111929,0.00232133005906777,0.00542523905917361,0.0102989363972378,0.00419316390217886,0.330209866766253,0.128405289517933,0.0791973004682178,-0.00313671220388083,-0.00113197916243314,0.00646197365151681,0.0136054060330778,0.0134088450547266,-0.00353868853079703,-0.00193289507679827,0.0122541047954672,0.013657373643098,0.0192124350824312,0.0166228641936173,-0.0178083708922731,-0.0178083708922731,0.00633578024694873,0.009928211281906,0.00925119130044519,0.0146610004599724,-0.00123243255860441,0.0232758279187438,0.0289980070112171,0.0177978126907615,0.00358302245974335,0.0102545570469719,-0.0178083708922731,-0.00354299731321914,0.00626619095437099,0.00172813957547516,0.00112291483783196,0.0110039201663221,0.0104242078532277,0.0134580445616557,0.01826425320093,0.00281661690754916,0.014033125428728,-0.00331517071790689,0.0194475463213347,0.0181612836320371,0.00631028913608314,0.00259319469749247,-0.00106982847920817,-0.0178083708922731,0.0131409074239011,0.0158278754964528,0.00985843033879037,0.0153475501795545,-6.40935707767676e-05,-0.00457752520196218,-0.000960486629036477,-0.00636730824628613,0.0365949068214836,-0.00826864756072265,0.794407775052006,0.655816874688713,0.761850237494891,0.869765588198869,0.945773485681798,1.00046630035801,0.926493070260536,0.801415989629149,1.00945027303536,1.03842932128902,0.917538260275722,-0.00696659278389984,0.0107763622725125,0.0128829563661282,0.0266480766906539,0.00784108734385356,0.0109324333635357,0.0107269869656257,-0.000608445377117977,0.0046102666509267,0.0168177970421861,0.0138156172049466,0.0102826651714207,0.0156390050646045,0.00905388319028583,0.0249059082047063,0.0139405985017642,0.011020589663741,0.00342981091930302,-0.0108347838772157,0.0108821519295185,0.00647860811839281,-0.0024719254175816,0.00626610975799733,-0.000131509833983595,0.00795965979471114,-0.0178083708922731,0.0160690211555736,0.00279355396760906,-0.0178083708922731,-0.00762561429226145,-0.00312980759570786,-0.0104307264581746,-0.00133535342163902,0.0273516680729729,-0.00455151308092399,0.0220593377613378,0.0172395651894344,-0.000664221008525696,0.00543556290127286,0.0512514917982116,0.0330270344786595,0.0245825249424601,0.0262724025878413,0.014831335018749,0.0150545069728631,0.0273002332161161,0.0277604720208366,0.0345474020755799,0.0359886755180257,0.0241817745550012,0.0519152786088536,0.0354770797796912,0.0183779162478563,0.0431340951125136,0.0235719357880148,0.0238574648854101,0.0407911489922514,0.0226223098572557,0.0240509881872392,0.0219919988817537,0.029683412868993,0.0380931000289205,0.0173629897344556,0.0174319028246548,0.0221167941085429,0.018318991370214,0.0332699743577647,0.00461084075862993,0.0113976407794799,0.0181745585306872,0.0330735265380522,-0.00539999068107413,0.00470417557186038,0.00425304177402805
|gostat_on_MCL_coexpression=GO:0004866;endopeptidase inhibitor activity;0.00155390727746792;78609,13013,268591!GO:0030414;protease inhibitor activity;0.00155390727746792;78609,13013,268591!GO:0004869;cysteine protease inhibitor activity;0.00216860408760358;78609,13013!GO:0004857;enzyme inhibitor activity;0.00216860408760358;78609,13013,268591!GO:0046655;folic acid metabolic process;0.00999287788308772;14275!GO:0005615;extracellular space;0.0117082944214759;78609,13013,268591,14275,14230!GO:0044421;extracellular region part;0.013191880929217;78609,13013,268591,14275,14230!GO:0006620;posttranslational protein targeting to membrane;0.0187294609469804;14275!GO:0008517;folic acid transporter activity;0.0221936232131417;14275!GO:0051183;vitamin transporter activity;0.0349348537543064;14275!GO:0051184;cofactor transporter activity;0.0362889929932853;14275!GO:0005542;folic acid binding;0.0415651954327155;14275!GO:0006760;folic acid and derivative metabolic process;0.0421965688191756;14275!GO:0042558;pteridine and derivative metabolic process;0.0462888715449998;14275!
}}

Revision as of 11:07, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:80011458..80011470,-p@chr10:80011458..80011470
-
Mm9::chr11:106117359..106117417,-p2@Ftsj3
Mm9::chr12:104878634..104878638,+p@chr12:104878634..104878638
+
Mm9::chr12:105339297..105339308,+p3@Serpina5
Mm9::chr12:105339352..105339367,+p1@Serpina5
Mm9::chr12:105339370..105339379,+p2@Serpina5
Mm9::chr12:105339383..105339386,+p5@Serpina5
Mm9::chr12:31775417..31775434,-p@chr12:31775417..31775434
-
Mm9::chr13:18123450..18123460,-p1@ENSMUST00000099736
Mm9::chr15:98722619..98722623,-p@chr15:98722619..98722623
-
Mm9::chr16:37843615..37843636,-p@chr16:37843615..37843636
-
Mm9::chr18:74037888..74037896,+p@chr18:74037888..74037896
+
Mm9::chr18:74038195..74038197,+p@chr18:74038195..74038197
+
Mm9::chr1:121420313..121420329,+p@chr1:121420313..121420329
+
Mm9::chr2:148607786..148607808,+p1@8030411F24Rik
Mm9::chr2:148607822..148607844,+p2@8030411F24Rik
Mm9::chr2:148660852..148660861,+p3@Cst9
Mm9::chr2:148660876..148660929,+p1@Cst9
Mm9::chr2:152406007..152406024,-p2@Defb19
Mm9::chr2:152406036..152406051,-p1@Defb19
Mm9::chr5:135825912..135825919,-p2@Fkbp6
Mm9::chr7:109015905..109015934,-p8@Folr1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004866endopeptidase inhibitor activity0.00155390727746792
GO:0030414protease inhibitor activity0.00155390727746792
GO:0004869cysteine protease inhibitor activity0.00216860408760358
GO:0004857enzyme inhibitor activity0.00216860408760358
GO:0046655folic acid metabolic process0.00999287788308772
GO:0005615extracellular space0.0117082944214759
GO:0044421extracellular region part0.013191880929217
GO:0006620posttranslational protein targeting to membrane0.0187294609469804
GO:0008517folic acid transporter activity0.0221936232131417
GO:0051183vitamin transporter activity0.0349348537543064
GO:0051184cofactor transporter activity0.0362889929932853
GO:0005542folic acid binding0.0415651954327155
GO:0006760folic acid and derivative metabolic process0.0421965688191756
GO:0042558pteridine and derivative metabolic process0.0462888715449998



Relative expression of the co-expression cluster over median <br>Analyst:


"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:349&oldid=2145863"