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MCL coexpression mm9:192: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0007023!2.39e-16!51;UBERON:0002193!5.20e-08!48;UBERON:0002405!5.20e-08!48;UBERON:0002106!7.48e-07!6;UBERON:0004457!7.48e-07!6;UBERON:0000042!7.48e-07!6;UBERON:0004854!7.48e-07!6;UBERON:0009034!7.48e-07!6;UBERON:0002095!7.48e-07!6;UBERON:0004782!7.48e-07!6;UBERON:0003281!7.48e-07!6;UBERON:0009664!7.48e-07!6;UBERON:0002296!7.48e-07!6;UBERON:0005602!7.48e-07!6;UBERON:0001179!7.48e-07!6;UBERON:0006293!7.48e-07!6
|ontology_enrichment_uberon=UBERON:0007023!2.39e-16!51;UBERON:0002193!5.20e-08!48;UBERON:0002405!5.20e-08!48;UBERON:0002106!7.48e-07!6;UBERON:0004457!7.48e-07!6;UBERON:0000042!7.48e-07!6;UBERON:0004854!7.48e-07!6;UBERON:0009034!7.48e-07!6;UBERON:0002095!7.48e-07!6;UBERON:0004782!7.48e-07!6;UBERON:0003281!7.48e-07!6;UBERON:0009664!7.48e-07!6;UBERON:0002296!7.48e-07!6;UBERON:0005602!7.48e-07!6;UBERON:0001179!7.48e-07!6;UBERON:0006293!7.48e-07!6
|tfbs_overrepresentation_for_novel_motifs=0.0151974,0.159739,0.0115341,0.457441,3.01183,0.492422,0.0497618,0.521509,0.26175,0.0074135,0.036867,1.07855,1.19415,0.0537631,0.90776,0,0.138669,1.68954,0.111626,0.269851,1.62772,0.0758792,0.197574,0.570867,0.16103,0.0633797,0.172596,0.0303155,0.00497482,0.146969,0.0270713,0.197802,0.04458,0.128673,0.00325416,0.00710192,0.00173006,0.0449101,0.602498,0.017898,0.368813,0.0282351,0.395217,1.2208,0.0218435,0.0204453,0.0987896,0.32186,0.725961,0.0289558,0.129394,0.0736078,0.0016811,0.293909,0.306656,0.0561765,0.0947048,0.0422054,0.244879,0.0554818,0.1854,0.0773893,0.0165687,0.123566,0.0600525,0.445486,2.78832,0.714043,1.0291,0.582319,0.00929745,0.0791327,1.35193e-06,0.331647,0.000100674,6.914e-05,0.321562,0.0936296,0.998736,3.02121,0.390073,0.14818,3.22043,0.0283202,0.248509,7.02765e-08,4.98404e-05,0.020023,0.101055,0.864265,0.469,0.251923,1.12153,1.13386,0.0270101,0.336233,0.226963,0.207688,0.0989069,0.0269749,0.712766,0.574233,0.281356,0.40648,0.405068,0.0281348,0.16203,0.134057,0.00836252,0.00764046,0.579317,0.282632,0.429279,0.0382686,2.07752,0.216574,4.71882e-06,0.0233416,0.139372,0.311895,0.33573,0.73414,0.0640471,0.641867,0.520643,0.177244,0.194386,0.201596,0.410666,0.0565327,0.269307,1.05274,0.387083,0.219779,0.493018,0.00141876,0.195082,0.525848,0.451982,1.21737,0.834426,0.415684,0.241814,0.20441,0.396428,0.117838,0.675013,1.1788,0.19821,0.00252527,0.0212097,4.39023e-07,0.295048,0.00592021,0.21881,0.356288,0.0740067,0.475166,2.08553,0.0164778,0.459848,1.98372,0.177511,0.172351,0.392045,0.802894,1.57412,1.51743,1.51672e-08
}}
}}

Revision as of 17:57, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:114667319..114667344,-p1@ENSMUST00000103428
p1@uc007pgf.1
p1@uc007pgl.1
Mm9::chr12:114667701..114667713,-p1@uc007pgg.1
Mm9::chr12:114826932..114826945,-p1@ENSMUST00000103443
Mm9::chr12:114849854..114849859,-p1@ENSMUST00000103445
Mm9::chr12:114940862..114940873,-p1@ENSMUST00000103450
Mm9::chr12:114974852..114974870,-p1@ENSMUST00000103452
Mm9::chr12:115298526..115298533,-p1@ENSMUST00000103469
Mm9::chr12:115391925..115391935,-p1@ENSMUST00000103474
Mm9::chr12:115538629..115538664,-p1@ENSMUST00000103482
Mm9::chr12:115561055..115561071,-p1@ENSMUST00000103483
Mm9::chr12:115673515..115673530,-p1@ENSMUST00000103489
Mm9::chr12:115725826..115725833,-p1@ENSMUST00000103493
Mm9::chr12:115751996..115752009,-p2@ENSMUST00000103494
Mm9::chr12:115752018..115752033,-p1@ENSMUST00000103494
Mm9::chr12:115777181..115777193,-p1@ENSMUST00000103496
Mm9::chr12:115822226..115822233,-p2@ENSMUST00000103498
Mm9::chr12:115822245..115822274,-p1@ENSMUST00000103498
Mm9::chr12:116118581..116118586,-p1@ENSMUST00000103513
Mm9::chr12:116184624..116184649,-p1@ENSMUST00000103517
Mm9::chr12:116432330..116432337,-p2@ENSMUST00000103525
Mm9::chr12:116746225..116746245,-p1@ENSMUST00000103535
Mm9::chr12:117219387..117219399,-p1@ENSMUST00000103551
Mm9::chr16:19063331..19063342,-p@chr16:19063331..19063342
-
Mm9::chr16:23307778..23307797,+p@chr16:23307778..23307797
+
Mm9::chr6:67559705..67559711,+p1@ENSMUST00000103303
Mm9::chr6:68252402..68252404,+p1@ENSMUST00000103322
Mm9::chr6:68686778..68686794,-p1@ENSMUST00000103331
Mm9::chr6:68757732..68757753,-p1@ENSMUST00000103334
Mm9::chr6:68813035..68813042,-p1@ENSMUST00000103336
Mm9::chr6:68880751..68880775,-p@chr6:68880751..68880775
-
Mm9::chr6:68941317..68941341,-p1@ENSMUST00000103340
Mm9::chr6:68993528..68993550,-p1@ENSMUST00000103342
Mm9::chr6:69135402..69135410,-p1@ENSMUST00000103344
Mm9::chr6:69450809..69450835,-p1@ENSMUST00000103355
Mm9::chr6:69765117..69765137,-p1@ENSMUST00000103367
Mm9::chr6:69773933..69773965,-p1@ENSMUST00000103368
Mm9::chr6:70067625..70067651,-p1@ENSMUST00000103378
Mm9::chr6:70210953..70210958,-p1@ENSMUST00000103386
Mm9::chr6:70385497..70385502,-p1@ENSMUST00000103394
Mm9::chr6:70468234..70468246,+p1@ENSMUST00000103396
Mm9::chr6:70522578..70522598,+p1@ENSMUST00000103397
Mm9::chr6:70557385..70557408,+p1@ENSMUST00000103399
Mm9::chr6:70676424..70676466,+p1@ENSMUST00000103410
Mm9::chr6:70676471..70676482,+p@chr6:70676471..70676482
+
Mm9::chr6:70676489..70676500,+p@chr6:70676489..70676500
+
Mm9::chr6:70676512..70676515,+p@chr6:70676512..70676515
+
Mm9::chr6:70676604..70676613,+p@chr6:70676604..70676613
+
Mm9::chr6:70676615..70676621,+p@chr6:70676615..70676621
+
Mm9::chr6:70676630..70676641,+p@chr6:70676630..70676641
+
Mm9::chr6:70676654..70676671,+p@chr6:70676654..70676671
+
Mm9::chr6:70676690..70676695,+p@chr6:70676690..70676695
+
Mm9::chr6:70676787..70676796,+p@chr6:70676787..70676796
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
megakaryocyte progenitor cell3.86e-116
megakaryocyte3.86e-116
megakaryocyte-erythroid progenitor cell4.70e-079

Uber Anatomy
Ontology termp-valuen
adult organism2.39e-1651
hemolymphoid system5.20e-0848
immune system5.20e-0848
spleen7.48e-076
cavity lining7.48e-076
serous membrane7.48e-076
gastrointestinal system mesentery7.48e-076
stomach region7.48e-076
mesentery7.48e-076
gastrointestinal system serosa7.48e-076
mesentery of stomach7.48e-076
gut mesentery7.48e-076
dorsal mesentery7.48e-076
dorsal mesogastrium7.48e-076
peritoneal cavity7.48e-076
spleen primordium7.48e-076


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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