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NonredundantMotifs:140: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.190538751212288;0.277187085130796;0.240231185848983;0.292042977807933!2;0.132706630818591;0.18724615499656;0.11129282969066;0.568754384494188!3;0.936111563210591;0.0211410395223405;0.0339319198188829;0.00881547744818532!4;0.0127206138910453;0.0233501765688957;0.00416426003316089;0.959764949506898!5;0.00718530226325272;0.00238642537439321;0.987110051211015;0.00331822115133882!6;0.0591340425091121;0.00900493315326316;0.0340156362361264;0.897845388101498!7;0.900905804842573;0.00257514283926338;0.0866771534842564;0.00984189883390717!8;0.00316271046869724;0.941370750010673;0.00219638335139719;0.0532701561692327!9;0.0346307238861193;0.265317647173159;0.0371785978074197;0.662873031133302!10;0.967171279005138;0.00701449170586037;0.00302759107375625;0.0227866382152448!11;0.980796341150691;0.00222761533267734;0.0100487532075611;0.00692729030907065!12;0.020629722097394;0.00575453641955615;0.00540821544001464;0.968207526043035!13;0.427020246918164;0.122682269293082;0.118346876630647;0.331950607158108!14;0.447074959584502;0.284989574957252;0.0616326153028505;0.206302850155396
|PWM=P0;A;C;G;T!1;0.190538751212288;0.277187085130796;0.240231185848983;0.292042977807933!2;0.132706630818591;0.18724615499656;0.11129282969066;0.568754384494188!3;0.936111563210591;0.0211410395223405;0.0339319198188829;0.00881547744818532!4;0.0127206138910453;0.0233501765688957;0.00416426003316089;0.959764949506898!5;0.00718530226325272;0.00238642537439321;0.987110051211015;0.00331822115133882!6;0.0591340425091121;0.00900493315326316;0.0340156362361264;0.897845388101498!7;0.900905804842573;0.00257514283926338;0.0866771534842564;0.00984189883390717!8;0.00316271046869724;0.941370750010673;0.00219638335139719;0.0532701561692327!9;0.0346307238861193;0.265317647173159;0.0371785978074197;0.662873031133302!10;0.967171279005138;0.00701449170586037;0.00302759107375625;0.0227866382152448!11;0.980796341150691;0.00222761533267734;0.0100487532075611;0.00692729030907065!12;0.020629722097394;0.00575453641955615;0.00540821544001464;0.968207526043035!13;0.427020246918164;0.122682269293082;0.118346876630647;0.331950607158108!14;0.447074959584502;0.284989574957252;0.0616326153028505;0.206302850155396
|entrez_gene_id=-
|entrez_gene_id=266792,432731
|motif_cluster_2013_march_motif_members= /UNIPROBE:Zfp187_primary;SCI09
|motif_cluster_2013_march_motif_members= /UNIPROBE:Zfp187_primary;SCI09
|name=non-redundant140
|name=non-redundant140

Latest revision as of 16:21, 31 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant140
  • db :UNIPROBE
  • Id :Zfp187_primary
  • name :SCI09
  • score :0.05127187168455749
  • External refs:
EntrezGene:266792
UniProt:266792

EntrezGene:432731
UniProt:432731

  • Internal refs:
EntrezGene:266792

EntrezGene:432731


Motif matrix
P0ACGT
10.1905387512122880.2771870851307960.2402311858489830.292042977807933
20.1327066308185910.187246154996560.111292829690660.568754384494188
30.9361115632105910.02114103952234050.03393191981888290.00881547744818532
40.01272061389104530.02335017656889570.004164260033160890.959764949506898
50.007185302263252720.002386425374393210.9871100512110150.00331822115133882
60.05913404250911210.009004933153263160.03401563623612640.897845388101498
70.9009058048425730.002575142839263380.08667715348425640.00984189883390717
80.003162710468697240.9413707500106730.002196383351397190.0532701561692327
90.03463072388611930.2653176471731590.03717859780741970.662873031133302
100.9671712790051380.007014491705860370.003027591073756250.0227866382152448
110.9807963411506910.002227615332677340.01004875320756110.00692729030907065
120.0206297220973940.005754536419556150.005408215440014640.968207526043035
130.4270202469181640.1226822692930820.1183468766306470.331950607158108
140.4470749595845020.2849895749572520.06163261530285050.206302850155396

Sub Motif Members