FFCP PHASE1:Hg19::chr11:116262019..116262030,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C53|description=CAGE_peak_at_chr11:116262019..116262030,+|id=chr11:116262019..116262030,+|ontology_enrichment_celltype=CL:0000312!5.95e-10!5;CL:0000240!1.94e-08!6;CL:0000311!1.94e-08!6;CL:0000079!1.94e-08!6;CL:0000237!1.94e-08!6;CL:0000036!1.94e-08!6;CL:0000357!1.94e-08!6;CL:0000114!1.94e-08!6;CL:0002253!8.52e-07!2|ontology_enrichment_celltype_v019=CL:0002577;2.74e-12;3!CL:0000333;5.73e-08;5!CL:0000312;6.78e-08;5!CL:0000240;8.72e-07;6!CL:0000311;8.72e-07;6!CL:0000079;8.72e-07;6!CL:0000237;8.72e-07;6|ontology_enrichment_celltype_v019_2=CL:0002577,2.31e-12,3;CL:0000312,7.49e-08,5;CL:0000240,9.49e-07,6;CL:0000311,9.49e-07,6;CL:0000079,9.49e-07,6;CL:0000237,9.49e-07,6;CL:0000036,9.49e-07,6;CL:0000357,9.49e-07,6;CL:0000114,9.49e-07,6|ontology_enrichment_development_v019=UBERON:0010122;9.86e-18;2!CL:0000357;8.72e-07;6!CL:0000114;8.72e-07;6|ontology_enrichment_disease=DOID:169!1.74e-08!6|ontology_enrichment_disease_v019=DOID:169;7.58e-07;6|ontology_enrichment_disease_v019_2=DOID:169,7.58e-07,6|ontology_enrichment_uberon=UBERON:0000369!1.01e-25!4;UBERON:0002435!1.01e-25!4;UBERON:0000204!1.01e-25!4;UBERON:0010082!1.01e-25!4;UBERON:0005383!4.30e-16!3;UBERON:0005382!4.30e-16!3;UBERON:0009663!5.55e-15!7;UBERON:0001874!9.92e-13!1;UBERON:0001882!3.08e-12!1;UBERON:0005403!3.08e-12!1;UBERON:0001282!3.45e-12!1;UBERON:0009842!3.45e-12!1;UBERON:0003704!3.45e-12!1;UBERON:0001171!3.45e-12!1;UBERON:0001172!3.45e-12!1;UBERON:0001987!4.57e-12!4;UBERON:0004340!4.57e-12!4;UBERON:0002308!8.77e-12!9;UBERON:0002420!8.77e-12!9;UBERON:0000125!8.77e-12!9;UBERON:0007245!8.77e-12!9;UBERON:0010009!8.77e-12!9;UBERON:0010011!8.77e-12!9;UBERON:0000454!8.77e-12!9;UBERON:0000013!5.20e-10!5;UBERON:0002410!5.20e-10!5;UBERON:0005631!1.09e-07!14;UBERON:0000158!1.09e-07!14;UBERON:0003124!2.86e-07!7;UBERON:0001873!5.73e-07!2;UBERON:0010122!5.73e-07!2|ontology_enrichment_uberon_v019=UBERON:0005383;1.91e-44;3!UBERON:0005382;1.91e-44;3!UBERON:0001874;5.97e-34;1!UBERON:0000369;1.17e-33;4!UBERON:0002435;1.17e-33;4!UBERON:0000204;1.17e-33;4!UBERON:0009663;9.48e-20;7!UBERON:0001873;9.86e-18;2!UBERON:0002420;1.31e-15;9!UBERON:0000125;1.31e-15;9!UBERON:0007245;1.31e-15;9!UBERON:0002308;1.31e-15;9!UBERON:0010009;1.31e-15;9!UBERON:0010011;1.31e-15;9!UBERON:0000454;1.31e-15;9!UBERON:0001987;1.50e-09;4!UBERON:0000013;5.73e-08;5!UBERON:0002410;5.73e-08;5|ontology_enrichment_uberon_v019_2=UBERON:0005383,1.91e-44,3;UBERON:0005382,1.91e-44,3;UBERON:0001874,5.05e-34,1;UBERON:0000369,1.17e-33,4;UBERON:0002435,1.17e-33,4;UBERON:0000204,1.17e-33,4;UBERON:0010082,1.17e-33,4;UBERON:0009663,9.49e-20,7;UBERON:0001873,1.07e-17,2;UBERON:0010122,1.07e-17,2;UBERON:0002420,1.31e-15,9;UBERON:0000125,1.31e-15,9;UBERON:0007245,1.31e-15,9;UBERON:0002308,1.31e-15,9;UBERON:0010009,1.31e-15,9;UBERON:0010011,1.31e-15,9;UBERON:0000454,1.31e-15,9;UBERON:0001987,1.32e-09,4;UBERON:0004340,1.32e-09,4;UBERON:0000013,5.73e-08,5;UBERON:0002410,5.73e-08,5|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,0,1.00528972411631,0,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0.422250816255987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08536794762867,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.47082628655646,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539124056983409,0,2.40261204022431,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0.135939465953663,0,0,0,0,1.09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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C53 | |||
|description=CAGE_peak_at_chr11:116262019..116262030,+ | |||
|id=chr11:116262019..116262030,+ | |||
|ontology_enrichment_celltype=CL:0000312!5.95e-10!5;CL:0000240!1.94e-08!6;CL:0000311!1.94e-08!6;CL:0000079!1.94e-08!6;CL:0000237!1.94e-08!6;CL:0000036!1.94e-08!6;CL:0000357!1.94e-08!6;CL:0000114!1.94e-08!6;CL:0002253!8.52e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002577;2.74e-12;3!CL:0000333;5.73e-08;5!CL:0000312;6.78e-08;5!CL:0000240;8.72e-07;6!CL:0000311;8.72e-07;6!CL:0000079;8.72e-07;6!CL:0000237;8.72e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,2.31e-12,3;CL:0000312,7.49e-08,5;CL:0000240,9.49e-07,6;CL:0000311,9.49e-07,6;CL:0000079,9.49e-07,6;CL:0000237,9.49e-07,6;CL:0000036,9.49e-07,6;CL:0000357,9.49e-07,6;CL:0000114,9.49e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0010122;9.86e-18;2!CL:0000357;8.72e-07;6!CL:0000114;8.72e-07;6 | |||
|ontology_enrichment_disease=DOID:169!1.74e-08!6 | |||
|ontology_enrichment_disease_v019=DOID:169;7.58e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:169,7.58e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0000369!1.01e-25!4;UBERON:0002435!1.01e-25!4;UBERON:0000204!1.01e-25!4;UBERON:0010082!1.01e-25!4;UBERON:0005383!4.30e-16!3;UBERON:0005382!4.30e-16!3;UBERON:0009663!5.55e-15!7;UBERON:0001874!9.92e-13!1;UBERON:0001882!3.08e-12!1;UBERON:0005403!3.08e-12!1;UBERON:0001282!3.45e-12!1;UBERON:0009842!3.45e-12!1;UBERON:0003704!3.45e-12!1;UBERON:0001171!3.45e-12!1;UBERON:0001172!3.45e-12!1;UBERON:0001987!4.57e-12!4;UBERON:0004340!4.57e-12!4;UBERON:0002308!8.77e-12!9;UBERON:0002420!8.77e-12!9;UBERON:0000125!8.77e-12!9;UBERON:0007245!8.77e-12!9;UBERON:0010009!8.77e-12!9;UBERON:0010011!8.77e-12!9;UBERON:0000454!8.77e-12!9;UBERON:0000013!5.20e-10!5;UBERON:0002410!5.20e-10!5;UBERON:0005631!1.09e-07!14;UBERON:0000158!1.09e-07!14;UBERON:0003124!2.86e-07!7;UBERON:0001873!5.73e-07!2;UBERON:0010122!5.73e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0005383;1.91e-44;3!UBERON:0005382;1.91e-44;3!UBERON:0001874;5.97e-34;1!UBERON:0000369;1.17e-33;4!UBERON:0002435;1.17e-33;4!UBERON:0000204;1.17e-33;4!UBERON:0009663;9.48e-20;7!UBERON:0001873;9.86e-18;2!UBERON:0002420;1.31e-15;9!UBERON:0000125;1.31e-15;9!UBERON:0007245;1.31e-15;9!UBERON:0002308;1.31e-15;9!UBERON:0010009;1.31e-15;9!UBERON:0010011;1.31e-15;9!UBERON:0000454;1.31e-15;9!UBERON:0001987;1.50e-09;4!UBERON:0000013;5.73e-08;5!UBERON:0002410;5.73e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005383,1.91e-44,3;UBERON:0005382,1.91e-44,3;UBERON:0001874,5.05e-34,1;UBERON:0000369,1.17e-33,4;UBERON:0002435,1.17e-33,4;UBERON:0000204,1.17e-33,4;UBERON:0010082,1.17e-33,4;UBERON:0009663,9.49e-20,7;UBERON:0001873,1.07e-17,2;UBERON:0010122,1.07e-17,2;UBERON:0002420,1.31e-15,9;UBERON:0000125,1.31e-15,9;UBERON:0007245,1.31e-15,9;UBERON:0002308,1.31e-15,9;UBERON:0010009,1.31e-15,9;UBERON:0010011,1.31e-15,9;UBERON:0000454,1.31e-15,9;UBERON:0001987,1.32e-09,4;UBERON:0004340,1.32e-09,4;UBERON:0000013,5.73e-08,5;UBERON:0002410,5.73e-08,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,0,1.00528972411631,0,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0.422250816255987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08536794762867,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.47082628655646,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539124056983409,0,2.40261204022431,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0.135939465953663,0,0,0,0,1.09980912941201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr11:116262019..116262030,+ | |||
}} |
Revision as of 15:51, 10 September 2013
Short description: | p@chr11:116262019..116262030, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:116262019..116262030, + |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 2.31e-12 | 3 |
keratinocyte | 7.49e-08 | 5 |
stratified squamous epithelial cell | 9.49e-07 | 6 |
keratin accumulating cell | 9.49e-07 | 6 |
stratified epithelial cell | 9.49e-07 | 6 |
keratinizing barrier epithelial cell | 9.49e-07 | 6 |
epithelial fate stem cell | 9.49e-07 | 6 |
stratified epithelial stem cell | 9.49e-07 | 6 |
surface ectodermal cell | 9.49e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
caudate-putamen | 1.91e-44 | 3 |
dorsal striatum | 1.91e-44 | 3 |
putamen | 5.05e-34 | 1 |
corpus striatum | 1.17e-33 | 4 |
striatum | 1.17e-33 | 4 |
ventral part of telencephalon | 1.17e-33 | 4 |
future corpus striatum | 1.17e-33 | 4 |
telencephalic nucleus | 9.49e-20 | 7 |
caudate nucleus | 1.07e-17 | 2 |
future caudate nucleus | 1.07e-17 | 2 |
basal ganglion | 1.31e-15 | 9 |
neural nucleus | 1.31e-15 | 9 |
nuclear complex of neuraxis | 1.31e-15 | 9 |
nucleus of brain | 1.31e-15 | 9 |
aggregate regional part of brain | 1.31e-15 | 9 |
collection of basal ganglia | 1.31e-15 | 9 |
cerebral subcortex | 1.31e-15 | 9 |
placenta | 1.32e-09 | 4 |
allantois | 1.32e-09 | 4 |
sympathetic nervous system | 5.73e-08 | 5 |
autonomic nervous system | 5.73e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 7.58e-07 | 6 |
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