FFCP PHASE1:Hg19::chr11:88799122..88799134,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2915|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4597|TSSclassifier=S|UniProt=A8MT20|association_with_transcript=-9bp_to_ENST00000393294,uc009yvn.1_5end|coexpression_cluster_id=C10|description=CAGE_peak_4_at_GRM5_5end|id=chr11:88799122..88799134,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001869!8.61e-99!32;UBERON:0001893!8.70e-93!34;UBERON:0002020!1.21e-92!34;UBERON:0003528!1.21e-92!34;UBERON:0002791!1.20e-88!33;UBERON:0002619!4.38e-86!22;UBERON:0001049!8.41e-86!57;UBERON:0005068!8.41e-86!57;UBERON:0006241!8.41e-86!57;UBERON:0007135!8.41e-86!57;UBERON:0002780!5.35e-82!41;UBERON:0001890!5.35e-82!41;UBERON:0006240!5.35e-82!41;UBERON:0003080!6.10e-80!42;UBERON:0001950!4.03e-77!20;UBERON:0000956!1.43e-75!25;UBERON:0000203!1.43e-75!25;UBERON:0002616!8.62e-73!59;UBERON:0005743!1.01e-72!86;UBERON:0001017!1.51e-72!82;UBERON:0000955!5.23e-69!69;UBERON:0006238!5.23e-69!69;UBERON:0000073!2.95e-65!94;UBERON:0001016!2.95e-65!94;UBERON:0003075!8.37e-62!86;UBERON:0007284!8.37e-62!86;UBERON:0002346!9.35e-59!90;UBERON:0003056!2.09e-57!61;UBERON:0007023!2.60e-39!115;UBERON:0000033!2.30e-38!123;UBERON:0000153!2.91e-36!129;UBERON:0007811!2.91e-36!129;UBERON:0004121!2.23e-33!169;UBERON:0000924!1.94e-32!173;UBERON:0006601!1.94e-32!173;UBERON:0000200!3.42e-27!6;UBERON:0002021!2.50e-24!5;UBERON:0001872!7.75e-24!5;UBERON:0001871!2.39e-20!7;UBERON:0000025!2.52e-20!194;UBERON:0000369!1.01e-19!4;UBERON:0002435!1.01e-19!4;UBERON:0000204!1.01e-19!4;UBERON:0010082!1.01e-19!4;UBERON:0002420!1.24e-18!9;UBERON:0007245!1.24e-18!9;UBERON:0010009!1.24e-18!9;UBERON:0010011!1.24e-18!9;UBERON:0000454!1.24e-18!9;UBERON:0002308!1.74e-18!9;UBERON:0000125!1.74e-18!9;UBERON:0009663!4.18e-17!7;UBERON:0000064!7.64e-16!219;UBERON:0000349!1.98e-15!5;UBERON:0005383!2.97e-15!3;UBERON:0005382!2.97e-15!3;UBERON:0004111!6.22e-15!241;UBERON:0002771!2.54e-14!3;UBERON:0000483!7.96e-12!309;UBERON:0000119!1.22e-11!312;UBERON:0000477!1.98e-11!286;UBERON:0001873!9.87e-11!2;UBERON:0010122!9.87e-11!2;UBERON:0001870!1.14e-10!2;UBERON:0001954!1.44e-10!2;UBERON:0003022!1.44e-10!2;UBERON:0002421!1.44e-10!2;UBERON:0002600!1.44e-10!2;UBERON:0003076!5.50e-10!15;UBERON:0003057!5.50e-10!15;UBERON:0000475!1.18e-09!365;UBERON:0000062!1.08e-07!511;UBERON:0002240!5.12e-07!3|ontology_enrichment_uberon_v019=UBERON:0002021;1.98e-71;5!UBERON:0001950;2.41e-47;20!UBERON:0002619;2.60e-43;22!UBERON:0000956;2.01e-38;25!UBERON:0000203;2.01e-38;25!UBERON:0002791;3.51e-30;32!UBERON:0001869;6.47e-30;32!UBERON:0003528;2.00e-23;34!UBERON:0002020;2.00e-23;34!UBERON:0001893;1.64e-22;34!UBERON:0002780;1.27e-21;41!UBERON:0001890;1.27e-21;41!UBERON:0002702;5.69e-21;2!UBERON:0001870;1.83e-14;3!UBERON:0000073;6.25e-12;53!UBERON:0002616;6.25e-12;53!UBERON:0001872;3.22e-09;5!UBERON:0001016;1.05e-08;83!UBERON:0000955;2.51e-08;68!UBERON:0000200;6.78e-08;6!UBERON:0001017;9.11e-07;75|ontology_enrichment_uberon_v019_2=UBERON:0002021,1.98e-71,5;UBERON:0001950,2.41e-47,20;UBERON:0002619,2.60e-43,22;UBERON:0000956,2.01e-38,25;UBERON:0000203,2.01e-38,25;UBERON:0002791,1.83e-30,32;UBERON:0001869,1.83e-30,32;UBERON:0003528,9.00e-29,34;UBERON:0002020,9.00e-29,34;UBERON:0001893,9.00e-29,34;UBERON:0002780,4.07e-24,41;UBERON:0001890,4.07e-24,41;UBERON:0003080,4.07e-24,41;UBERON:0006240,4.07e-24,41;UBERON:0002702,4.66e-21,2;UBERON:0000073,6.22e-19,53;UBERON:0002616,6.22e-19,53;UBERON:0001049,5.63e-18,56;UBERON:0005068,5.63e-18,56;UBERON:0006241,5.63e-18,56;UBERON:0007135,5.63e-18,56;UBERON:0003056,1.38e-16,61;UBERON:0000955,9.02e-15,68;UBERON:0006238,9.02e-15,68;UBERON:0001870,1.60e-14,3;UBERON:0001017,1.45e-12,81;UBERON:0003075,1.45e-12,82;UBERON:0007284,1.45e-12,82;UBERON:0002346,5.13e-12,86;UBERON:0001016,2.13e-11,89;UBERON:0010371,4.61e-10,104;UBERON:0001872,3.49e-09,5;UBERON:0010314,4.60e-08,132;UBERON:0000200,6.34e-08,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2915 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4597 | |||
|TSSclassifier=S | |||
|UniProt=A8MT20 | |||
|association_with_transcript=-9bp_to_ENST00000393294,uc009yvn.1_5end | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_4_at_GRM5_5end | |||
|id=chr11:88799122..88799134,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!8.61e-99!32;UBERON:0001893!8.70e-93!34;UBERON:0002020!1.21e-92!34;UBERON:0003528!1.21e-92!34;UBERON:0002791!1.20e-88!33;UBERON:0002619!4.38e-86!22;UBERON:0001049!8.41e-86!57;UBERON:0005068!8.41e-86!57;UBERON:0006241!8.41e-86!57;UBERON:0007135!8.41e-86!57;UBERON:0002780!5.35e-82!41;UBERON:0001890!5.35e-82!41;UBERON:0006240!5.35e-82!41;UBERON:0003080!6.10e-80!42;UBERON:0001950!4.03e-77!20;UBERON:0000956!1.43e-75!25;UBERON:0000203!1.43e-75!25;UBERON:0002616!8.62e-73!59;UBERON:0005743!1.01e-72!86;UBERON:0001017!1.51e-72!82;UBERON:0000955!5.23e-69!69;UBERON:0006238!5.23e-69!69;UBERON:0000073!2.95e-65!94;UBERON:0001016!2.95e-65!94;UBERON:0003075!8.37e-62!86;UBERON:0007284!8.37e-62!86;UBERON:0002346!9.35e-59!90;UBERON:0003056!2.09e-57!61;UBERON:0007023!2.60e-39!115;UBERON:0000033!2.30e-38!123;UBERON:0000153!2.91e-36!129;UBERON:0007811!2.91e-36!129;UBERON:0004121!2.23e-33!169;UBERON:0000924!1.94e-32!173;UBERON:0006601!1.94e-32!173;UBERON:0000200!3.42e-27!6;UBERON:0002021!2.50e-24!5;UBERON:0001872!7.75e-24!5;UBERON:0001871!2.39e-20!7;UBERON:0000025!2.52e-20!194;UBERON:0000369!1.01e-19!4;UBERON:0002435!1.01e-19!4;UBERON:0000204!1.01e-19!4;UBERON:0010082!1.01e-19!4;UBERON:0002420!1.24e-18!9;UBERON:0007245!1.24e-18!9;UBERON:0010009!1.24e-18!9;UBERON:0010011!1.24e-18!9;UBERON:0000454!1.24e-18!9;UBERON:0002308!1.74e-18!9;UBERON:0000125!1.74e-18!9;UBERON:0009663!4.18e-17!7;UBERON:0000064!7.64e-16!219;UBERON:0000349!1.98e-15!5;UBERON:0005383!2.97e-15!3;UBERON:0005382!2.97e-15!3;UBERON:0004111!6.22e-15!241;UBERON:0002771!2.54e-14!3;UBERON:0000483!7.96e-12!309;UBERON:0000119!1.22e-11!312;UBERON:0000477!1.98e-11!286;UBERON:0001873!9.87e-11!2;UBERON:0010122!9.87e-11!2;UBERON:0001870!1.14e-10!2;UBERON:0001954!1.44e-10!2;UBERON:0003022!1.44e-10!2;UBERON:0002421!1.44e-10!2;UBERON:0002600!1.44e-10!2;UBERON:0003076!5.50e-10!15;UBERON:0003057!5.50e-10!15;UBERON:0000475!1.18e-09!365;UBERON:0000062!1.08e-07!511;UBERON:0002240!5.12e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002021;1.98e-71;5!UBERON:0001950;2.41e-47;20!UBERON:0002619;2.60e-43;22!UBERON:0000956;2.01e-38;25!UBERON:0000203;2.01e-38;25!UBERON:0002791;3.51e-30;32!UBERON:0001869;6.47e-30;32!UBERON:0003528;2.00e-23;34!UBERON:0002020;2.00e-23;34!UBERON:0001893;1.64e-22;34!UBERON:0002780;1.27e-21;41!UBERON:0001890;1.27e-21;41!UBERON:0002702;5.69e-21;2!UBERON:0001870;1.83e-14;3!UBERON:0000073;6.25e-12;53!UBERON:0002616;6.25e-12;53!UBERON:0001872;3.22e-09;5!UBERON:0001016;1.05e-08;83!UBERON:0000955;2.51e-08;68!UBERON:0000200;6.78e-08;6!UBERON:0001017;9.11e-07;75 | |||
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|short_description=p4@GRM5 | |||
}} |
Revision as of 20:06, 10 September 2013
Short description: | p4@GRM5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_GRM5_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | -9bp_to_ENST00000393294, uc009yvn.1_5end |
EntrezGene: | GRM5 |
HGNC: | 4597 |
UniProt: | A8MT20 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
occipital lobe | 1.98e-71 | 5 |
neocortex | 2.41e-47 | 20 |
regional part of cerebral cortex | 2.60e-43 | 22 |
cerebral cortex | 2.01e-38 | 25 |
pallium | 2.01e-38 | 25 |
regional part of telencephalon | 1.83e-30 | 32 |
cerebral hemisphere | 1.83e-30 | 32 |
brain grey matter | 9.00e-29 | 34 |
gray matter | 9.00e-29 | 34 |
telencephalon | 9.00e-29 | 34 |
regional part of forebrain | 4.07e-24 | 41 |
forebrain | 4.07e-24 | 41 |
anterior neural tube | 4.07e-24 | 41 |
future forebrain | 4.07e-24 | 41 |
middle frontal gyrus | 4.66e-21 | 2 |
regional part of nervous system | 6.22e-19 | 53 |
regional part of brain | 6.22e-19 | 53 |
neural tube | 5.63e-18 | 56 |
neural rod | 5.63e-18 | 56 |
future spinal cord | 5.63e-18 | 56 |
neural keel | 5.63e-18 | 56 |
pre-chordal neural plate | 1.38e-16 | 61 |
brain | 9.02e-15 | 68 |
future brain | 9.02e-15 | 68 |
frontal cortex | 1.60e-14 | 3 |
central nervous system | 1.45e-12 | 81 |
neural plate | 1.45e-12 | 82 |
presumptive neural plate | 1.45e-12 | 82 |
neurectoderm | 5.13e-12 | 86 |
nervous system | 2.13e-11 | 89 |
ecto-epithelium | 4.61e-10 | 104 |
parietal lobe | 3.49e-09 | 5 |
structure with developmental contribution from neural crest | 4.60e-08 | 132 |
gyrus | 6.34e-08 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.