FFCP PHASE1:Hg19::chr14:105767323..105767359,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2972|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11551|TSSclassifier=S|UniProt=C9IZD9,C9J8N9,Q92994,Q96KX3|association_with_transcript=0bp_to_ENST00000332890,ENST00000345053,NM_001242788,NM_001242790,NM_001519,uc001yqp.2,uc001yqr.2,uc010axg.1_5end|description=CAGE_peak_1_at_BRF1_5end|id=chr14:105767323..105767359,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.79e-10!115;UBERON:0002346!1.77e-07!90;UBERON:0003075!2.62e-07!86;UBERON:0007284!2.62e-07!86|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.39e-10,114;UBERON:0002346,2.43e-08,86;UBERON:0003075,3.51e-08,82;UBERON:0007284,3.51e-08,82;UBERON:0010371,1.59e-07,104|phase1_expression=2.72517568905835,4.49611100171065,2.81908808191942,2.00146596706261,3.5756887554183,4.36169262050184,5.06599756336621,5.05375898741465,9.40268261519419,3.68600904752263,13.2582221914761,8.51921351307672,7.3854753903967,3.96052329472149,5.30235801164665,3.36162573225888,0.602694528023977,2.92124036154949,3.90346239032406,6.52541607806976,7.14002419354885,9.71709636582072,5.15224776835902,5.06435372769671,5.90050406095573,4.20273731613732,3.44822475689772,3.93553906568396,1.96682138424452,4.98978217526377,7.27635779585557,6.43594857135249,5.72291245678675,7.39508020333575,1.85921281392724,2.13253848731132,4.69760702935756,6.64794490238253,12.2332112956786,12.8036413722353,7.83704159839735,5.83008598834163,4.89393578504954,4.50734540216651,2.64513160582167,3.63876091781724,3.71886459049095,4.52284676824008,4.33588919253145,2.01384674625505,3.84241059793651,3.31075121844019,6.20542225325913,4.51839278508678,9.47985406160392,4.70605848856512,3.27487380069415,1.57306439111559,3.67300670845083,0.641858054152187,3.83602275479425,2.30895910130701,3.39088217956774,2.98357325372886,3.48251086354301,2.26954089876456,4.35975574296902,4.27122730936464,8.34372669472322,5.64690996233303,2.42159801053347,5.15588690382591,2.21523671208619,5.49263744411049,6.37812899895131,7.54771123830153,8.19999007369414,8.71025978480737,6.26829788118613,5.41524213108372,8.15558376516269,6.21058122799755,7.03984977845291,4.91524750135918,4.44754626931777,7.68114400619713,4.40435585739614,5.74752439954483,6.61044872784862,4.77026877267682,11.9534723512984,8.80855784056408,12.9972897562578,18.5039860010636,10.6496626966492,6.05783394982677,14.163103448196,13.3623659334716,9.25206745497792,5.18278135711102,9.77766799900771,7.57516489175573,9.74133642039557,5.57052284425868,6.18672405697158,6.64601683750863,3.79125409271022,7.68547918354051,5.07231455483525,9.53739846701322,11.8830507647915,10.1431080007268,15.1252294425302,14.4472047168445,17.7710390468461,9.17805675850286,13.4127172760672,10.6524508099615,6.83153168452658,7.96413535810242,7.81300144627702,5.70271226669025,5.57127940587759,8.06315650272836,1.24930726552346,3.78843603270427,2.46338399076314,11.4915843638097,10.9650480271238,15.7858600232251,0,4.02420515822182,4.34732710268003,3.2529523714611,9.5254203020819,6.22840031531542,0.795285947051099,5.83961844363163,3.59232305223458,3.99112915432615,3.24988707064566,9.56147251133302,11.2931539370688,8.89882662682631,6.49094787309367,4.87563264437948,5.18536046023574,10.2550968451297,6.86393892936153,7.4291500265913,5.36658499890104,7.74211135595512,5.20710752411391,6.21838736116411,5.45349267072878,6.05259692268148,4.38889429727302,6.71883573840255,4.26919515224052,4.35136796594071,6.0424397566372,4.56163263431108,8.05404789908959,3.67663080345869,7.29127753093584,4.46498641420399,4.4905874525234,4.39184773884957,7.66583187329416,8.54339093611316,7.14486801328588,0,3.87780264148325,6.97750483428055,2.48485975847659,3.67228483827281,7.54732330635347,9.17877186396204,4.61068896857864,5.60677600142307,5.33744978648525,8.14002909776628,2.8008993185979,3.09834545760283,3.43269996538263,6.35701196108712,7.49028701823999,12.4190358871912,4.37024107562449,7.98660550162229,6.42629326372745,4.11020745253177,4.85618833104395,4.07307339436521,3.87892925384297,5.28187564440602,5.16628905878827,2.37600571456411,5.93440630268536,6.37112953356618,10.0606539854273,3.03005005117319,4.50426671539071,1.93944880838928,1.75591048352335,3.0648779579902,6.30999847407706,3.17610112848059,8.61070251306537,5.12537733164562,2.54318281391474,6.00182192168805,3.19462840639161,10.8209026819164,5.76962254627928,8.27004027982204,2.33848812386877,11.6119536152293,5.33889412125336,4.36444353410792,7.4552014428489,3.02256294682921,4.57813599238317,2.70565194428616,2.18196896472668,2.29443676311203,4.39105342066543,3.5783037446801,3.02104251460748,4.5610864206763,2.27088765788066,2.91981887260664,3.12899064659632,9.00537313470039,5.52539685409922,5.57241513638375,7.21879481669586,2.48444280083672,3.5402784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5.30032861210352,5.64388160621463,9.2984260068348,1.86919826156599,5.45106724283151,8.37952543656503,3.49794045737251,3.39252483350749,4.58763333230399,4.25279243452592,5.11235471772562,9.63331495149536,9.46041248799579,5.83754780114783,11.3545788618828,7.85431242612679,9.52248312927721,7.43990036333503,9.24351257262837,3.46101249699031,3.15416062087697,1.74824915141913,7.47521155967478,1.83579893535567,3.74104367371785,4.04337557953318,2.25636785363138,4.24360710022141,5.62724673327975,6.63335551567024,8.17120667308972,10.87493307695,6.42773964952099,4.65040150819244,8.06971285846153,2.91542842709595,8.14683625960511,10.7122110147856,5.44291869742403,6.16019941953506,7.34137377859004,6.02466525298481,7.31852784401229,3.33753401304995,4.69600321861948,1.9307228228694,3.77265848847665,0,8.55690109280065,5.69654649642034,2.66302709674205,6.84330898209489,4.48795889224526|short_description=p1@BRF1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=2972 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11551 | |||
|TSSclassifier=S | |||
|UniProt=C9IZD9,C9J8N9,Q92994,Q96KX3 | |||
|association_with_transcript=0bp_to_ENST00000332890,ENST00000345053,NM_001242788,NM_001242790,NM_001519,uc001yqp.2,uc001yqr.2,uc010axg.1_5end | |||
|description=CAGE_peak_1_at_BRF1_5end | |||
|id=chr14:105767323..105767359,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.79e-10!115;UBERON:0002346!1.77e-07!90;UBERON:0003075!2.62e-07!86;UBERON:0007284!2.62e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.39e-10,114;UBERON:0002346,2.43e-08,86;UBERON:0003075,3.51e-08,82;UBERON:0007284,3.51e-08,82;UBERON:0010371,1.59e-07,104 | |||
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| |||
|short_description=p1@BRF1 | |||
}} |
Revision as of 03:30, 11 September 2013
Short description: | p1@BRF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_BRF1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000332890, ENST00000345053, NM_001242788, NM_001242790, NM_001519, uc001yqp.2, uc001yqr.2, uc010axg.1_5end |
EntrezGene: | BRF1 |
HGNC: | 11551 |
UniProt: | C9IZD9C9J8N9Q92994Q96KX3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.39e-10 | 114 |
neurectoderm | 2.43e-08 | 86 |
neural plate | 3.51e-08 | 82 |
presumptive neural plate | 3.51e-08 | 82 |
ecto-epithelium | 1.59e-07 | 104 |
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