FFCP PHASE1:Hg19::chr15:63796779..63796863,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9960|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12626|TSSclassifier=S|UniProt=Q6JHV3,Q9Y6I4,B4DV65,B4DWJ6,F5H1A6|association_with_transcript=0bp_to_ENST00000268049,ENST00000380324,ENST00000536001,ENST00000539772,ENST00000540797,ENST00000557884,ENST00000558157,ENST00000560070,ENST00000561326,ENST00000561442,NM_006537,uc002amf.2,uc002amg.2,uc002amh.2,uc010uii.1,uc010uij.1,uc010uik.1_5end|coexpression_cluster_id=C1308|description=CAGE_peak_1_at_USP3_5end|id=chr15:63796779..63796863,+|ontology_enrichment_celltype=CL:0000738!4.59e-45!140;CL:0000037!4.71e-44!172;CL:0000566!4.71e-44!172;CL:0002032!3.70e-41!165;CL:0000837!3.70e-41!165;CL:0000988!4.83e-38!182;CL:0002087!4.21e-37!119;CL:0002031!2.34e-35!124;CL:0000763!1.40e-26!112;CL:0000049!1.40e-26!112;CL:0000766!2.48e-26!76;CL:0002057!5.21e-26!42;CL:0000860!3.18e-25!45;CL:0002009!7.69e-23!65;CL:0000557!1.09e-22!71;CL:0002194!4.26e-22!63;CL:0000576!4.26e-22!63;CL:0000040!4.26e-22!63;CL:0000559!4.26e-22!63;CL:0000839!5.83e-21!70;CL:0000838!3.33e-13!52;CL:0000542!5.86e-13!53;CL:0000051!5.86e-13!53;CL:0000791!5.28e-10!18;CL:0000789!5.28e-10!18;CL:0002420!5.28e-10!18;CL:0002419!5.28e-10!18;CL:0000790!5.28e-10!18;CL:0002320!9.42e-08!365;CL:0000134!1.21e-07!358|ontology_enrichment_celltype_v019=CL:0000860;5.07e-19;33!CL:0002057;5.07e-19;33!CL:0000473;7.33e-16;39!CL:0000234;7.33e-16;39!CL:0000576;8.98e-16;48!CL:0000766;1.75e-12;69!CL:0002087;3.43e-12;104!CL:0000738;4.80e-10;136!CL:0000791;5.07e-10;18!CL:0000789;5.07e-10;18!CL:0002419;5.07e-10;18!CL:0000763;2.44e-08;100!CL:0000542;1.20e-07;53!CL:0000988;4.60e-07;177|ontology_enrichment_celltype_v019_2=CL:0000738,3.37e-46,136;CL:0000037,6.52e-45,168;CL:0002032,5.26e-42,161;CL:0000837,5.26e-42,161;CL:0000988,4.42e-39,177;CL:0002087,3.10e-38,115;CL:0002031,2.19e-36,120;CL:0000766,1.17e-27,72;CL:0000763,1.89e-27,108;CL:0000049,1.89e-27,108;CL:0000860,5.21e-26,42;CL:0002057,5.21e-26,42;CL:0000473,1.20e-25,48;CL:0000234,1.20e-25,48;CL:0002009,3.37e-24,61;CL:0000557,6.46e-24,67;CL:0002194,1.87e-23,59;CL:0000576,1.87e-23,59;CL:0000040,1.87e-23,59;CL:0000559,1.87e-23,59;CL:0000839,4.17e-22,66;CL:0000838,3.33e-13,52;CL:0000542,5.86e-13,53;CL:0000051,5.86e-13,53;CL:0000791,5.28e-10,18;CL:0000789,5.28e-10,18;CL:0002420,5.28e-10,18;CL:0002419,5.28e-10,18;CL:0000790,5.28e-10,18;CL:0002320,1.15e-07,361;CL:0000134,1.47e-07,354|ontology_enrichment_development_v019=CL:0002057;6.11e-19;42!CL:0000790;5.07e-10;18!CL:0000049;2.94e-08;108!CL:0000051;1.20e-07;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.11e-24!102;UBERON:0003061!1.11e-24!102;UBERON:0002193!1.84e-23!112;UBERON:0002371!2.50e-19!80;UBERON:0002405!1.47e-18!115;UBERON:0001474!6.31e-18!86;UBERON:0004765!2.13e-13!101;UBERON:0001434!2.13e-13!101;UBERON:0002384!2.22e-07!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.41e-25,98;UBERON:0003061,1.41e-25,98;UBERON:0002193,3.15e-24,108;UBERON:0002405,5.00e-21,93;UBERON:0002371,3.07e-20,76;UBERON:0001474,1.05e-18,82;UBERON:0004765,6.80e-17,90;UBERON:0001434,4.90e-14,100;UBERON:0002384,2.71e-07,371|phase1_expression=15.0793054794562,19.2690471501885,16.6326196833246,7.00513088471913,13.4088328328186,17.4467704820074,15.1979926900986,22.1101955699391,31.6034610121805,17.2013755551056,12.5604210235037,18.3490752589345,16.0897856719357,31.1891209459318,32.1455454456078,15.4634783683908,13.2592796165275,14.6062018077475,10.2465887746006,16.9907060145967,14.2800483870977,13.4785530235578,21.7539350219603,26.9642617393582,20.4634502539529,61.0543111926131,53.4474837319147,55.4911008261439,144.758053880397,144.319853684552,149.242742876697,12.871897142705,22.5904439083688,58.4211336063525,21.6133489619042,29.2868618924088,22.0200329501135,171.18458123635,253.287637154789,188.365435781359,45.6787567449446,52.1468802290557,48.9393578504954,186.836736831741,185.914964294894,184.36388650274,170.370484051867,138.974746151377,125.740786583412,128.310806975679,155.233388156635,142.12582016304,155.825047692952,167.826017731795,155.740459583493,164.335562420694,122.534861375973,119.32817024034,135.289080427939,144.418062184242,136.818144920995,156.67936758869,156.778434890603,175.178372468937,106.50679057669,126.526905106124,96.5374485943141,141.452998539546,189.298299386533,147.688414399479,89.5991263897386,124.846118599784,102.217351143406,126.753171787165,120.12142948025,119.086110648758,148.273793113374,157.835914376423,202.514239238321,102.034562259367,124.720756603829,110.329148873839,49.2789484491704,63.3520789064073,73.829268070675,66.1431844978086,59.2586060813298,70.6945501144014,76.0201603702591,62.967547799334,133.76504774072,152.094432047073,136.853815668832,64.7639510037227,78.471198817415,25.0214880536323,231.330689653868,249.954845108469,160.985973716616,47.3137781955619,107.880270255718,89.0081874781299,126.637373465142,55.705228442586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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9960 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12626 | |||
|TSSclassifier=S | |||
|UniProt=Q6JHV3,Q9Y6I4,B4DV65,B4DWJ6,F5H1A6 | |||
|association_with_transcript=0bp_to_ENST00000268049,ENST00000380324,ENST00000536001,ENST00000539772,ENST00000540797,ENST00000557884,ENST00000558157,ENST00000560070,ENST00000561326,ENST00000561442,NM_006537,uc002amf.2,uc002amg.2,uc002amh.2,uc010uii.1,uc010uij.1,uc010uik.1_5end | |||
|coexpression_cluster_id=C1308 | |||
|description=CAGE_peak_1_at_USP3_5end | |||
|id=chr15:63796779..63796863,+ | |||
|ontology_enrichment_celltype=CL:0000738!4.59e-45!140;CL:0000037!4.71e-44!172;CL:0000566!4.71e-44!172;CL:0002032!3.70e-41!165;CL:0000837!3.70e-41!165;CL:0000988!4.83e-38!182;CL:0002087!4.21e-37!119;CL:0002031!2.34e-35!124;CL:0000763!1.40e-26!112;CL:0000049!1.40e-26!112;CL:0000766!2.48e-26!76;CL:0002057!5.21e-26!42;CL:0000860!3.18e-25!45;CL:0002009!7.69e-23!65;CL:0000557!1.09e-22!71;CL:0002194!4.26e-22!63;CL:0000576!4.26e-22!63;CL:0000040!4.26e-22!63;CL:0000559!4.26e-22!63;CL:0000839!5.83e-21!70;CL:0000838!3.33e-13!52;CL:0000542!5.86e-13!53;CL:0000051!5.86e-13!53;CL:0000791!5.28e-10!18;CL:0000789!5.28e-10!18;CL:0002420!5.28e-10!18;CL:0002419!5.28e-10!18;CL:0000790!5.28e-10!18;CL:0002320!9.42e-08!365;CL:0000134!1.21e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.07e-19;33!CL:0002057;5.07e-19;33!CL:0000473;7.33e-16;39!CL:0000234;7.33e-16;39!CL:0000576;8.98e-16;48!CL:0000766;1.75e-12;69!CL:0002087;3.43e-12;104!CL:0000738;4.80e-10;136!CL:0000791;5.07e-10;18!CL:0000789;5.07e-10;18!CL:0002419;5.07e-10;18!CL:0000763;2.44e-08;100!CL:0000542;1.20e-07;53!CL:0000988;4.60e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.37e-46,136;CL:0000037,6.52e-45,168;CL:0002032,5.26e-42,161;CL:0000837,5.26e-42,161;CL:0000988,4.42e-39,177;CL:0002087,3.10e-38,115;CL:0002031,2.19e-36,120;CL:0000766,1.17e-27,72;CL:0000763,1.89e-27,108;CL:0000049,1.89e-27,108;CL:0000860,5.21e-26,42;CL:0002057,5.21e-26,42;CL:0000473,1.20e-25,48;CL:0000234,1.20e-25,48;CL:0002009,3.37e-24,61;CL:0000557,6.46e-24,67;CL:0002194,1.87e-23,59;CL:0000576,1.87e-23,59;CL:0000040,1.87e-23,59;CL:0000559,1.87e-23,59;CL:0000839,4.17e-22,66;CL:0000838,3.33e-13,52;CL:0000542,5.86e-13,53;CL:0000051,5.86e-13,53;CL:0000791,5.28e-10,18;CL:0000789,5.28e-10,18;CL:0002420,5.28e-10,18;CL:0002419,5.28e-10,18;CL:0000790,5.28e-10,18;CL:0002320,1.15e-07,361;CL:0000134,1.47e-07,354 | |||
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|ontology_enrichment_uberon=UBERON:0002390!1.11e-24!102;UBERON:0003061!1.11e-24!102;UBERON:0002193!1.84e-23!112;UBERON:0002371!2.50e-19!80;UBERON:0002405!1.47e-18!115;UBERON:0001474!6.31e-18!86;UBERON:0004765!2.13e-13!101;UBERON:0001434!2.13e-13!101;UBERON:0002384!2.22e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
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| |||
|short_description=p1@USP3 | |||
}} |
Revision as of 07:48, 11 September 2013
Short description: | p1@USP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_USP3_5end |
Coexpression cluster: | C1308_CD14_CD4_Basophils_Peripheral_Neutrophils_Eosinophils_CD8 |
Association with transcript: | 0bp_to_ENST00000268049, ENST00000380324, ENST00000536001, ENST00000539772, ENST00000540797, ENST00000557884, ENST00000558157, ENST00000560070, ENST00000561326, ENST00000561442, NM_006537, uc002amf.2, uc002amg.2, uc002amh.2, uc010uii.1, uc010uij.1, uc010uik.1_5end |
EntrezGene: | USP3 |
HGNC: | 12626 |
UniProt: | Q6JHV3Q9Y6I4B4DV65B4DWJ6F5H1A6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.41e-25 | 98 |
blood island | 1.41e-25 | 98 |
hemolymphoid system | 3.15e-24 | 108 |
immune system | 5.00e-21 | 93 |
bone marrow | 3.07e-20 | 76 |
bone element | 1.05e-18 | 82 |
skeletal element | 6.80e-17 | 90 |
skeletal system | 4.90e-14 | 100 |
connective tissue | 2.71e-07 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.