FFCP PHASE1:Hg19::chr19:54872562..54872573,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3903|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6477|TSSclassifier=S|UniProt=|association_with_transcript=-6bp_to_ENST00000444687_5end|coexpression_cluster_id=C143|description=CAGE_peak_12_at_LAIR1_5end|id=chr19:54872562..54872573,-|ontology_enrichment_celltype=CL:0000839!1.96e-52!70;CL:0000766!2.21e-52!76;CL:0000557!1.62e-51!71;CL:0002194!7.77e-48!63;CL:0000576!7.77e-48!63;CL:0000040!7.77e-48!63;CL:0000559!7.77e-48!63;CL:0002009!5.22e-46!65;CL:0002057!1.72e-44!42;CL:0000860!7.12e-41!45;CL:0000738!1.54e-39!140;CL:0002031!3.78e-39!124;CL:0000763!8.20e-38!112;CL:0000049!8.20e-38!112;CL:0002087!1.07e-35!119;CL:0000037!1.75e-34!172;CL:0000566!1.75e-34!172;CL:0002032!1.22e-33!165;CL:0000837!1.22e-33!165;CL:0000988!1.15e-31!182;CL:0002393!2.46e-11!9;CL:0002397!2.46e-11!9;CL:0000134!1.03e-10!358;CL:0002320!3.35e-10!365;CL:0002619!1.99e-08!3;CL:0000219!2.03e-08!390;CL:0002274!5.04e-08!5;CL:0000457!5.04e-08!5;CL:0002191!5.04e-08!5;CL:0000097!5.04e-08!5;CL:0000831!5.04e-08!5;CL:0002028!5.04e-08!5;CL:0000875!2.35e-07!3;CL:0002396!2.35e-07!3|ontology_enrichment_celltype_v019=CL:0000097;2.89e-24;5!CL:0000473;2.56e-21;39!CL:0000234;2.56e-21;39!CL:0000235;1.47e-20;6!CL:0002619;8.29e-19;3!CL:0000766;4.86e-18;69!CL:0000163;8.76e-14;9!CL:0000860;1.82e-13;33!CL:0002057;1.82e-13;33!CL:0000763;7.31e-12;100!CL:0000576;3.15e-10;48|ontology_enrichment_celltype_v019_2=CL:0000839,3.14e-37,66;CL:0000557,1.16e-36,67;CL:0000766,4.62e-34,72;CL:0002194,1.31e-25,59;CL:0000576,1.31e-25,59;CL:0000040,1.31e-25,59;CL:0000559,1.31e-25,59;CL:0002009,9.56e-25,61;CL:0000097,4.31e-24,5;CL:0002028,4.31e-24,5;CL:0000763,2.33e-22,108;CL:0000049,2.33e-22,108;CL:0000473,1.82e-21,48;CL:0000234,1.82e-21,48;CL:0000235,2.27e-20,6;CL:0002031,5.34e-20,120;CL:0002619,4.62e-19,3;CL:0000738,1.72e-17,136;CL:0002032,1.47e-14,161;CL:0000837,1.47e-14,161;CL:0000037,6.84e-14,168;CL:0000163,1.09e-13,9;CL:0000988,4.13e-13,177;CL:0002087,1.18e-12,115;CL:0000860,3.59e-11,42;CL:0002057,3.59e-11,42|ontology_enrichment_development_v019=CL:0000049;6.19e-09;108!CL:0002057;8.34e-08;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!1.84e-46!80;UBERON:0002390!7.92e-43!102;UBERON:0003061!7.92e-43!102;UBERON:0001474!2.60e-42!86;UBERON:0002405!1.25e-41!115;UBERON:0002193!2.67e-41!112;UBERON:0004765!4.30e-34!101;UBERON:0001434!4.30e-34!101;UBERON:0002204!1.64e-16!167;UBERON:0003081!1.30e-14!216;UBERON:0002384!3.96e-10!375|ontology_enrichment_uberon_v019=UBERON:0002370;6.57e-08;2!UBERON:0005058;6.57e-08;2!UBERON:0009113;6.57e-08;2|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.18e-32,76;UBERON:0002405,3.64e-30,93;UBERON:0001474,8.49e-30,82;UBERON:0002390,1.42e-28,98;UBERON:0003061,1.42e-28,98;UBERON:0004765,4.66e-27,90;UBERON:0002193,7.99e-26,108;UBERON:0001434,3.05e-24,100;UBERON:0002204,5.53e-14,167;UBERON:0003081,4.26e-13,203;UBERON:0000926,7.36e-08,315;UBERON:0004120,7.36e-08,315;UBERON:0006603,7.36e-08,315|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0.200544447470142,0,2.23915474239924,1.94336199611388,0.77272670290256,0.872389432677388,0,0.727752183563449,1.85943229524548,0.822335776043652,0,0,0.256160706529101,0,2.06847408441971,0,1.35426486594342,0.752969358170419,0.272906150057846,0.224723484445085,2.14258724659632,1.28371610830437,1.91801137739712,0,0.398927315243264,0,0.290209238628584,0.56738522469114,0.622822248995575,0.502497330513487,0,0,0.605399502633369,0.368277635987565,0.949387162322653,0.422510572623884,0.850417199860174,0.419317291016752,0.22465726229299,0.150176892841506,0.32145117339416,0.570025487482497,0.39783335439818,0.365328307529268,0,0.546138611262131,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0.501559486172034,0.32592226663359,0,0,0.111410456885174,0,0,0,0.128091319725675,0,0,0.276350017785848,0.289803085735052,0.14828656316206,0,0,0.113309342697566,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,0,0.594524649154913,0,0,0,0,0,0,0,0.264145302039678,1.4512968087854,1.00883967391873,1.00993946741104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,1.00451418286425,2.10833939483032,0,0,0,0,0,0,0,0,0.215627574859517,0.128343036279748,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3903 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6477 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-6bp_to_ENST00000444687_5end | |||
|coexpression_cluster_id=C143 | |||
|description=CAGE_peak_12_at_LAIR1_5end | |||
|id=chr19:54872562..54872573,- | |||
|ontology_enrichment_celltype=CL:0000839!1.96e-52!70;CL:0000766!2.21e-52!76;CL:0000557!1.62e-51!71;CL:0002194!7.77e-48!63;CL:0000576!7.77e-48!63;CL:0000040!7.77e-48!63;CL:0000559!7.77e-48!63;CL:0002009!5.22e-46!65;CL:0002057!1.72e-44!42;CL:0000860!7.12e-41!45;CL:0000738!1.54e-39!140;CL:0002031!3.78e-39!124;CL:0000763!8.20e-38!112;CL:0000049!8.20e-38!112;CL:0002087!1.07e-35!119;CL:0000037!1.75e-34!172;CL:0000566!1.75e-34!172;CL:0002032!1.22e-33!165;CL:0000837!1.22e-33!165;CL:0000988!1.15e-31!182;CL:0002393!2.46e-11!9;CL:0002397!2.46e-11!9;CL:0000134!1.03e-10!358;CL:0002320!3.35e-10!365;CL:0002619!1.99e-08!3;CL:0000219!2.03e-08!390;CL:0002274!5.04e-08!5;CL:0000457!5.04e-08!5;CL:0002191!5.04e-08!5;CL:0000097!5.04e-08!5;CL:0000831!5.04e-08!5;CL:0002028!5.04e-08!5;CL:0000875!2.35e-07!3;CL:0002396!2.35e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000097;2.89e-24;5!CL:0000473;2.56e-21;39!CL:0000234;2.56e-21;39!CL:0000235;1.47e-20;6!CL:0002619;8.29e-19;3!CL:0000766;4.86e-18;69!CL:0000163;8.76e-14;9!CL:0000860;1.82e-13;33!CL:0002057;1.82e-13;33!CL:0000763;7.31e-12;100!CL:0000576;3.15e-10;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000839,3.14e-37,66;CL:0000557,1.16e-36,67;CL:0000766,4.62e-34,72;CL:0002194,1.31e-25,59;CL:0000576,1.31e-25,59;CL:0000040,1.31e-25,59;CL:0000559,1.31e-25,59;CL:0002009,9.56e-25,61;CL:0000097,4.31e-24,5;CL:0002028,4.31e-24,5;CL:0000763,2.33e-22,108;CL:0000049,2.33e-22,108;CL:0000473,1.82e-21,48;CL:0000234,1.82e-21,48;CL:0000235,2.27e-20,6;CL:0002031,5.34e-20,120;CL:0002619,4.62e-19,3;CL:0000738,1.72e-17,136;CL:0002032,1.47e-14,161;CL:0000837,1.47e-14,161;CL:0000037,6.84e-14,168;CL:0000163,1.09e-13,9;CL:0000988,4.13e-13,177;CL:0002087,1.18e-12,115;CL:0000860,3.59e-11,42;CL:0002057,3.59e-11,42 | |||
|ontology_enrichment_development_v019=CL:0000049;6.19e-09;108!CL:0002057;8.34e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.84e-46!80;UBERON:0002390!7.92e-43!102;UBERON:0003061!7.92e-43!102;UBERON:0001474!2.60e-42!86;UBERON:0002405!1.25e-41!115;UBERON:0002193!2.67e-41!112;UBERON:0004765!4.30e-34!101;UBERON:0001434!4.30e-34!101;UBERON:0002204!1.64e-16!167;UBERON:0003081!1.30e-14!216;UBERON:0002384!3.96e-10!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;6.57e-08;2!UBERON:0005058;6.57e-08;2!UBERON:0009113;6.57e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.18e-32,76;UBERON:0002405,3.64e-30,93;UBERON:0001474,8.49e-30,82;UBERON:0002390,1.42e-28,98;UBERON:0003061,1.42e-28,98;UBERON:0004765,4.66e-27,90;UBERON:0002193,7.99e-26,108;UBERON:0001434,3.05e-24,100;UBERON:0002204,5.53e-14,167;UBERON:0003081,4.26e-13,203;UBERON:0000926,7.36e-08,315;UBERON:0004120,7.36e-08,315;UBERON:0006603,7.36e-08,315 | |||
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|short_description=p12@LAIR1 | |||
}} |
Revision as of 22:20, 11 September 2013
Short description: | p12@LAIR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_LAIR1_5end |
Coexpression cluster: | C143_Monocytederived_CD14_Macrophage_Dendritic_Basophils_CD14CD16_Osteoblast |
Association with transcript: | -6bp_to_ENST00000444687_5end |
EntrezGene: | LAIR1 |
HGNC: | 6477 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid lineage restricted progenitor cell | 3.14e-37 | 66 |
granulocyte monocyte progenitor cell | 1.16e-36 | 67 |
myeloid leukocyte | 4.62e-34 | 72 |
monopoietic cell | 1.31e-25 | 59 |
monocyte | 1.31e-25 | 59 |
monoblast | 1.31e-25 | 59 |
promonocyte | 1.31e-25 | 59 |
macrophage dendritic cell progenitor | 9.56e-25 | 61 |
mast cell | 4.31e-24 | 5 |
basophil mast progenitor cell | 4.31e-24 | 5 |
myeloid cell | 2.33e-22 | 108 |
common myeloid progenitor | 2.33e-22 | 108 |
defensive cell | 1.82e-21 | 48 |
phagocyte | 1.82e-21 | 48 |
macrophage | 2.27e-20 | 6 |
hematopoietic lineage restricted progenitor cell | 5.34e-20 | 120 |
adult endothelial progenitor cell | 4.62e-19 | 3 |
leukocyte | 1.72e-17 | 136 |
hematopoietic oligopotent progenitor cell | 1.47e-14 | 161 |
hematopoietic multipotent progenitor cell | 1.47e-14 | 161 |
hematopoietic stem cell | 6.84e-14 | 168 |
endocrine cell | 1.09e-13 | 9 |
hematopoietic cell | 4.13e-13 | 177 |
nongranular leukocyte | 1.18e-12 | 115 |
classical monocyte | 3.59e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.59e-11 | 42 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.18e-32 | 76 |
immune system | 3.64e-30 | 93 |
bone element | 8.49e-30 | 82 |
hematopoietic system | 1.42e-28 | 98 |
blood island | 1.42e-28 | 98 |
skeletal element | 4.66e-27 | 90 |
hemolymphoid system | 7.99e-26 | 108 |
skeletal system | 3.05e-24 | 100 |
musculoskeletal system | 5.53e-14 | 167 |
lateral plate mesoderm | 4.26e-13 | 203 |
mesoderm | 7.36e-08 | 315 |
mesoderm-derived structure | 7.36e-08 | 315 |
presumptive mesoderm | 7.36e-08 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.