FFCP PHASE1:Hg19::chr2:204571303..204571334,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=940|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1653|TSSclassifier=S|UniProt=P10747|association_with_transcript=32bp_to_ENST00000324106_5end|coexpression_cluster_id=C18|description=CAGE_peak_3_at_CD28_5end|id=chr2:204571303..204571334,+|ontology_enrichment_celltype=CL:0000791!1.80e-24!18;CL:0000789!1.80e-24!18;CL:0002420!1.80e-24!18;CL:0002419!1.80e-24!18;CL:0000790!1.80e-24!18;CL:0000084!2.15e-22!25;CL:0000827!2.15e-22!25;CL:0000738!1.79e-21!140;CL:0002087!1.88e-18!119;CL:0000625!1.04e-15!11;CL:0002031!5.96e-15!124;CL:0000037!8.81e-15!172;CL:0000566!8.81e-15!172;CL:0000838!1.42e-14!52;CL:0000542!3.95e-14!53;CL:0000051!3.95e-14!53;CL:0000988!5.46e-13!182;CL:0002032!5.51e-13!165;CL:0000837!5.51e-13!165;CL:0000624!7.60e-10!6|ontology_enrichment_celltype_v019=CL:0000791;2.74e-37;18!CL:0000789;2.74e-37;18!CL:0002419;2.74e-37;18!CL:0000084;1.21e-35;25!CL:0000625;1.05e-25;11!CL:0000624;1.12e-15;6!CL:0000542;1.95e-11;53!CL:0000898;6.64e-09;3!CL:0000226;8.57e-08;3!CL:0000842;8.57e-08;3!CL:0000623;1.44e-07;3!CL:0002619;2.97e-07;3|ontology_enrichment_celltype_v019_2=CL:0000791,2.65e-37,18;CL:0000789,2.65e-37,18;CL:0002420,2.65e-37,18;CL:0002419,2.65e-37,18;CL:0000790,2.65e-37,18;CL:0000084,1.23e-35,25;CL:0000827,1.23e-35,25;CL:0000625,1.04e-25,11;CL:0000838,3.04e-23,52;CL:0000542,1.15e-22,53;CL:0000051,1.15e-22,53;CL:0002087,3.06e-18,115;CL:0000738,5.28e-17,136;CL:0000624,1.09e-15,6;CL:0002031,1.11e-13,120;CL:0000037,1.17e-12,168;CL:0000988,1.68e-11,177;CL:0002032,3.58e-10,161;CL:0000837,3.58e-10,161;CL:0000898,6.72e-09,3;CL:0000226,7.79e-08,3;CL:0000842,7.79e-08,3;CL:0000623,1.44e-07,3;CL:0000825,1.44e-07,3;CL:0002619,3.22e-07,3|ontology_enrichment_development_v019=CL:0000790;2.74e-37;18!CL:0000051;1.95e-11;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!3.98e-13!115;UBERON:0000178!1.92e-12!15;UBERON:0000179!1.92e-12!15;UBERON:0000463!1.92e-12!15;UBERON:0002390!4.11e-12!102;UBERON:0003061!4.11e-12!102;UBERON:0002193!1.53e-11!112;UBERON:0004177!7.93e-07!7|ontology_enrichment_uberon_v019=UBERON:0000178;4.73e-21;15!UBERON:0000179;4.73e-21;15!UBERON:0000463;4.73e-21;15!UBERON:0002390;5.33e-16;32!UBERON:0002193;4.97e-11;42!UBERON:0004177;1.45e-07;5!UBERON:0005057;1.45e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.91e-21,15;UBERON:0000179,4.91e-21,15;UBERON:0000463,4.91e-21,15;UBERON:0002193,3.26e-10,108;UBERON:0002390,5.71e-10,98;UBERON:0003061,5.71e-10,98;UBERON:0004177,2.52e-08,7;UBERON:0005057,2.52e-08,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,1.53531759238885,0.928896739896456,0,0,0,0.0774672005803016,0,0,1.66198622559563,1.80490002723128,2.60413044859022,3.35873211359887,2.26725566213286,2.06060454107349,0,0,0,0,0.822335776043652,0,0,0.256160706529101,0,0.689491361473237,1.29096936716765,0,0.188242339542605,0,0,0.612167784741805,0.320929027076094,0,0,0.199463657621632,0,0,0,0.622822248995575,0,0.521482918420201,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68152568894461,0,22.424913792977,12.9693551707224,19.1209394069544,58.8496463775187,26.7256258639544,24.6192858982061,23.3792074089494,48.5749592019357,40.6556152315275,38.3253637629665,54.7023804805332,62.3804727064038,65.159733127499,21.0480517892705,23.2134014940113,34.4865672024712,32.6230438956533,35.0478484797524,29.2699466653935,38.1852484890798,29.124757513746,34.7063719937456,47.314682407647,15.6097053018807,14.9749194386976,13.3063286222772,28.6092726247768,31.1007465105237,12.4930726552346,20.3628436757855,17.243687935342,6.04820229674197,3.20928234940209,4.63438092424957,0,0,0,0,0,0,0,0,0,0,0,0.458426764241994,0,0,0.324547393654683,0.174129737299267,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.50487269004906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738651018262192,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,5.02257091432126,0,0,0,0,0,0,0,0.112085143993527,7.68419964787516,3.45004119775228,4.49200626979119,0,0,0,0,0,0.749007023947182,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.958705384513,4.52999821719095,7.89783927745488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0,10.6563997938756,10.7049208999933,8.54470780761244,12.388052323805,15.2204041041892,10.3755729790835,12.4207230564766,11.1037524681198,0,0,0,0,0,10.3867091288685,8.13073990916994,0,0,0,0,0,2.05411211129873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=940 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1653 | |||
|TSSclassifier=S | |||
|UniProt=P10747 | |||
|association_with_transcript=32bp_to_ENST00000324106_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_3_at_CD28_5end | |||
|id=chr2:204571303..204571334,+ | |||
|ontology_enrichment_celltype=CL:0000791!1.80e-24!18;CL:0000789!1.80e-24!18;CL:0002420!1.80e-24!18;CL:0002419!1.80e-24!18;CL:0000790!1.80e-24!18;CL:0000084!2.15e-22!25;CL:0000827!2.15e-22!25;CL:0000738!1.79e-21!140;CL:0002087!1.88e-18!119;CL:0000625!1.04e-15!11;CL:0002031!5.96e-15!124;CL:0000037!8.81e-15!172;CL:0000566!8.81e-15!172;CL:0000838!1.42e-14!52;CL:0000542!3.95e-14!53;CL:0000051!3.95e-14!53;CL:0000988!5.46e-13!182;CL:0002032!5.51e-13!165;CL:0000837!5.51e-13!165;CL:0000624!7.60e-10!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.74e-37;18!CL:0000789;2.74e-37;18!CL:0002419;2.74e-37;18!CL:0000084;1.21e-35;25!CL:0000625;1.05e-25;11!CL:0000624;1.12e-15;6!CL:0000542;1.95e-11;53!CL:0000898;6.64e-09;3!CL:0000226;8.57e-08;3!CL:0000842;8.57e-08;3!CL:0000623;1.44e-07;3!CL:0002619;2.97e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.65e-37,18;CL:0000789,2.65e-37,18;CL:0002420,2.65e-37,18;CL:0002419,2.65e-37,18;CL:0000790,2.65e-37,18;CL:0000084,1.23e-35,25;CL:0000827,1.23e-35,25;CL:0000625,1.04e-25,11;CL:0000838,3.04e-23,52;CL:0000542,1.15e-22,53;CL:0000051,1.15e-22,53;CL:0002087,3.06e-18,115;CL:0000738,5.28e-17,136;CL:0000624,1.09e-15,6;CL:0002031,1.11e-13,120;CL:0000037,1.17e-12,168;CL:0000988,1.68e-11,177;CL:0002032,3.58e-10,161;CL:0000837,3.58e-10,161;CL:0000898,6.72e-09,3;CL:0000226,7.79e-08,3;CL:0000842,7.79e-08,3;CL:0000623,1.44e-07,3;CL:0000825,1.44e-07,3;CL:0002619,3.22e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;2.74e-37;18!CL:0000051;1.95e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.98e-13!115;UBERON:0000178!1.92e-12!15;UBERON:0000179!1.92e-12!15;UBERON:0000463!1.92e-12!15;UBERON:0002390!4.11e-12!102;UBERON:0003061!4.11e-12!102;UBERON:0002193!1.53e-11!112;UBERON:0004177!7.93e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.73e-21;15!UBERON:0000179;4.73e-21;15!UBERON:0000463;4.73e-21;15!UBERON:0002390;5.33e-16;32!UBERON:0002193;4.97e-11;42!UBERON:0004177;1.45e-07;5!UBERON:0005057;1.45e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.91e-21,15;UBERON:0000179,4.91e-21,15;UBERON:0000463,4.91e-21,15;UBERON:0002193,3.26e-10,108;UBERON:0002390,5.71e-10,98;UBERON:0003061,5.71e-10,98;UBERON:0004177,2.52e-08,7;UBERON:0005057,2.52e-08,7 | |||
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|short_description=p3@CD28 | |||
}} |
Revision as of 16:09, 12 September 2013
Short description: | p3@CD28 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_CD28_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 32bp_to_ENST00000324106_5end |
EntrezGene: | CD28 |
HGNC: | 1653 |
UniProt: | P10747 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.65e-37 | 18 |
alpha-beta T cell | 2.65e-37 | 18 |
immature T cell | 2.65e-37 | 18 |
mature T cell | 2.65e-37 | 18 |
immature alpha-beta T cell | 2.65e-37 | 18 |
T cell | 1.23e-35 | 25 |
pro-T cell | 1.23e-35 | 25 |
CD8-positive, alpha-beta T cell | 1.04e-25 | 11 |
lymphoid lineage restricted progenitor cell | 3.04e-23 | 52 |
lymphocyte | 1.15e-22 | 53 |
common lymphoid progenitor | 1.15e-22 | 53 |
nongranular leukocyte | 3.06e-18 | 115 |
leukocyte | 5.28e-17 | 136 |
CD4-positive, alpha-beta T cell | 1.09e-15 | 6 |
hematopoietic lineage restricted progenitor cell | 1.11e-13 | 120 |
hematopoietic stem cell | 1.17e-12 | 168 |
hematopoietic cell | 1.68e-11 | 177 |
hematopoietic oligopotent progenitor cell | 3.58e-10 | 161 |
hematopoietic multipotent progenitor cell | 3.58e-10 | 161 |
naive T cell | 6.72e-09 | 3 |
single nucleate cell | 7.79e-08 | 3 |
mononuclear cell | 7.79e-08 | 3 |
natural killer cell | 1.44e-07 | 3 |
pro-NK cell | 1.44e-07 | 3 |
adult endothelial progenitor cell | 3.22e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 4.91e-21 | 15 |
haemolymphatic fluid | 4.91e-21 | 15 |
organism substance | 4.91e-21 | 15 |
hemolymphoid system | 3.26e-10 | 108 |
hematopoietic system | 5.71e-10 | 98 |
blood island | 5.71e-10 | 98 |
hemopoietic organ | 2.52e-08 | 7 |
immune organ | 2.52e-08 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.