FFCP PHASE1:Hg19::chr3:143690657..143690675,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=205428|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=28490|TSSclassifier=S|UniProt=Q8NDZ4,B3KTD4|association_with_transcript=17bp_to_ENST00000315691,NM_173552,uc003evo.2_5end|description=CAGE_peak_1_at_C3orf58_5end|id=chr3:143690657..143690675,+|ontology_enrichment_celltype=CL:0000738!1.01e-19!140;CL:0002057!2.32e-19!42;CL:0000037!2.83e-17!172;CL:0000566!2.83e-17!172;CL:0000860!5.14e-17!45;CL:0002031!1.32e-16!124;CL:0002032!9.83e-16!165;CL:0000837!9.83e-16!165;CL:0000988!3.15e-15!182;CL:0002087!3.81e-15!119;CL:0000766!1.09e-12!76;CL:0000557!1.18e-11!71;CL:0000839!1.52e-11!70;CL:0000763!1.10e-10!112;CL:0000049!1.10e-10!112;CL:0002009!2.75e-10!65;CL:0002194!1.04e-09!63;CL:0000576!1.04e-09!63;CL:0000040!1.04e-09!63;CL:0000559!1.04e-09!63;CL:0000236!3.68e-08!14|ontology_enrichment_celltype_v019=CL:0000860;2.26e-15;33!CL:0002057;2.26e-15;33!CL:0000576;4.98e-12;48!CL:0000473;1.53e-11;39!CL:0000234;1.53e-11;39!CL:0000766;1.56e-08;69!CL:0000236;3.67e-08;13!CL:0002087;5.97e-07;104|ontology_enrichment_celltype_v019_2=CL:0000738,3.42e-22,136;CL:0000860,1.01e-19,42;CL:0002057,1.01e-19,42;CL:0000037,3.38e-19,168;CL:0002031,8.60e-19,120;CL:0002032,1.14e-17,161;CL:0000837,1.14e-17,161;CL:0000473,1.63e-17,48;CL:0000234,1.63e-17,48;CL:0002087,4.24e-17,115;CL:0000988,4.85e-17,177;CL:0000766,1.72e-15,72;CL:0000557,3.03e-14,67;CL:0000839,3.89e-14,66;CL:0000763,1.12e-12,108;CL:0000049,1.12e-12,108;CL:0002009,1.25e-12,61;CL:0002194,5.35e-12,59;CL:0000576,5.35e-12,59;CL:0000040,5.35e-12,59;CL:0000559,5.35e-12,59;CL:0000236,2.70e-08,14|ontology_enrichment_development_v019=CL:0002057;3.17e-14;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.96e-12!115;UBERON:0002390!1.14e-09!102;UBERON:0003061!1.14e-09!102;UBERON:0002193!1.11e-08!112;UBERON:0001474!1.12e-08!86;UBERON:0002371!6.88e-08!80;UBERON:0002405!1.09e-07!115;UBERON:0002616!3.50e-07!59;UBERON:0001049!7.39e-07!57;UBERON:0005068!7.39e-07!57;UBERON:0006241!7.39e-07!57;UBERON:0007135!7.39e-07!57|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.99e-12,114;UBERON:0002390,7.13e-12,98;UBERON:0003061,7.13e-12,98;UBERON:0001474,5.08e-11,82;UBERON:0002193,1.50e-10,108;UBERON:0002371,4.20e-10,76;UBERON:0002405,1.22e-09,93;UBERON:0004765,1.64e-09,90;UBERON:0001434,1.00e-07,100|phase1_expression=1.45342703416445,2.35510576280081,2.81908808191942,2.00146596706261,4.02264984984559,2.61701557230111,2.53299878168311,1.89515962028049,1.56711376919903,0.491467873003018,2.09340350391728,0.655324116390517,0.263766978228454,1.98026164736075,2.31978163009541,1.34465029290355,1.80808358407193,2.19093027116212,1.95173119516203,0.861847406537515,0.408001382488506,1.25381888591235,1.43117993565528,2.6006140763848,2.00868223351684,0.993374274723366,0.985207073399349,0.629686250509434,12.5876568591649,6.90892916574983,10.0630480155449,3.67768489791571,1.50602959389125,0.369754010166788,3.02122082263176,2.41687695228617,0.880801318004542,12.7418943962332,9.42558903109666,14.7567392086779,4.92614043327834,2.59114932815184,3.60605794687861,6.83371722263954,3.40088349319928,6.54976965207104,6.97287110717054,3.28934310417461,6.19412741790207,5.75384784644301,6.40401766322752,7.33094912654614,14.1345729102014,10.973239620925,12.1883837934908,4.1413314699373,4.91231070104122,3.59557575112135,6.12167784741805,6.41858054152187,13.4260796417799,6.59702600373432,5.38551875578406,7.6720455095885,7.54544020434318,1.70215567407342,4.35975574296902,6.53246529667532,9.90817544998383,11.7281976140763,4.84319602106695,6.2607198117886,7.27863491114034,5.0701268714866,3.61427309940574,3.77385561915077,7.30136102452218,6.75796017786778,5.6253955343978,1.99508920618874,3.77941686678271,3.47061892152804,12.3197371122926,13.6534652815533,6.22656477704488,13.6553671221282,7.20712776664822,10.3455439191807,5.94940385506376,7.63243003628291,6.26134266020393,5.87237189370939,7.26319133437935,1.32171328579026,3.36305137788922,2.37045676297569,2.75393678159366,5.10913991573914,3.28962398399215,1.67186495390678,4.23698946623668,0.946895611469467,1.94826728407911,0.891283655081389,4.12448270464772,1.77227115666897,3.24964636518019,0.896639238079726,1.04047478047903,0.657751618414705,1.38175008892924,0.579606171470105,1.33457906845854,1.33770414044857,2.09071047609954,1.13309342697566,1.91610246800961,2.40539211837841,2.27717722817553,2.22995790026868,0,0,0.903450714466637,1.15187950038977,4.99722906209383,1.89421801635213,1.64225599384209,4.43534835094411,3.7441627409691,3.91025890483557,0,4.69490601792545,2.04580098949649,0,0.50133791063589,1.44846518960824,0,0.486634870302636,3.11964896641424,2.66075276955077,1.22968699970376,2.16115474571226,0.364295288292542,1.11235332835329,0.324547393654683,0.174129737299267,0.531831842075461,3.33886874027479,5.14795419702115,4.82894751728434,1.59009925893364,0.860234595106124,3.12426451446835,2.26123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25759087,2.36569737947272,3.71456715401171,2.34323429584154,4.13373593002368,2.53663240775627,0.546974809018219,0.548257766857182,2.97726707033577,0.175871244359621,2.8107734080711,6.96412386641773,8.07080933325178,1.21393120847326,0.682986574053893,2.12885688390333,5.99216735290052,7.37398440580899,3.60239584777208,2.43359262182542,1.89110145414349,1.33477682270483,3.3752029925721,1.88538707899202,1.68163297988273,0.913158720509496,0.863710364874486,0.9555033757741,1.71543706023975,6.79458530450724,9.99676258165877,0.347716544605159,8.01711364730253,1.65772931330429,1.53646629384555,0.691259661814092,0.860454717640555,0.946656005844523,0.766920642832419,0.846774100381858,3.2074961596167,6.2041277132864,0.955538938977433,0.111855431797792,0.687051635306701,3.77945567445035,1.29485767437579,1.64260490969995,1.1598144313382,2.4285549652957,4.91272873270422,0.795803100645473,0,1.6941912305844,8.46541978939804,2.71733118420012,2.2380505851304,5.02686989159102,0.940634592723046,2.94177986104687,0.235676547101626,2.74831853960923,4.45569600490629,1.2679671827502,0.509781344063451,3.94732455515385,2.77168918286382,1.29923502702408,1.96409332466223,1.76447435857846,2.40724100067505,0.730336388246517,0.917458566809082,6.16360207551241,0.473314686579554,4.69141282317311,1.30905207102113,2.645134202577,0,2.31087814315709,1.73050624849516,1.38783067318587,0.764859003745869,2.28057301820587,4.07955318967927,2.40495664739004,1.01084389488329,2.005660314339,2.5006970412019,1.07185652062471,5.80418607621146,7.44717570205646,1.70587185520785,1.42838658878244,3.93992349999637,5.4625748580355,1.23345048838675,2.5458863311266,2.42540626749863,1.74173398317569,4.44903291410865,2.28996980249598,3.01233262649241,3.32660356546013,0.732629417498771,2.98836568457603,3.8614456457388,1.07790242527904,7.03922827210363,2.81155321620593,2.44137706989443,5.3260541934841,3.22038069745642,0.641136984606466|short_description=p1@C3orf58}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=205428 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28490 | |||
|TSSclassifier=S | |||
|UniProt=Q8NDZ4,B3KTD4 | |||
|association_with_transcript=17bp_to_ENST00000315691,NM_173552,uc003evo.2_5end | |||
|description=CAGE_peak_1_at_C3orf58_5end | |||
|id=chr3:143690657..143690675,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.01e-19!140;CL:0002057!2.32e-19!42;CL:0000037!2.83e-17!172;CL:0000566!2.83e-17!172;CL:0000860!5.14e-17!45;CL:0002031!1.32e-16!124;CL:0002032!9.83e-16!165;CL:0000837!9.83e-16!165;CL:0000988!3.15e-15!182;CL:0002087!3.81e-15!119;CL:0000766!1.09e-12!76;CL:0000557!1.18e-11!71;CL:0000839!1.52e-11!70;CL:0000763!1.10e-10!112;CL:0000049!1.10e-10!112;CL:0002009!2.75e-10!65;CL:0002194!1.04e-09!63;CL:0000576!1.04e-09!63;CL:0000040!1.04e-09!63;CL:0000559!1.04e-09!63;CL:0000236!3.68e-08!14 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.26e-15;33!CL:0002057;2.26e-15;33!CL:0000576;4.98e-12;48!CL:0000473;1.53e-11;39!CL:0000234;1.53e-11;39!CL:0000766;1.56e-08;69!CL:0000236;3.67e-08;13!CL:0002087;5.97e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.42e-22,136;CL:0000860,1.01e-19,42;CL:0002057,1.01e-19,42;CL:0000037,3.38e-19,168;CL:0002031,8.60e-19,120;CL:0002032,1.14e-17,161;CL:0000837,1.14e-17,161;CL:0000473,1.63e-17,48;CL:0000234,1.63e-17,48;CL:0002087,4.24e-17,115;CL:0000988,4.85e-17,177;CL:0000766,1.72e-15,72;CL:0000557,3.03e-14,67;CL:0000839,3.89e-14,66;CL:0000763,1.12e-12,108;CL:0000049,1.12e-12,108;CL:0002009,1.25e-12,61;CL:0002194,5.35e-12,59;CL:0000576,5.35e-12,59;CL:0000040,5.35e-12,59;CL:0000559,5.35e-12,59;CL:0000236,2.70e-08,14 | |||
|ontology_enrichment_development_v019=CL:0002057;3.17e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.96e-12!115;UBERON:0002390!1.14e-09!102;UBERON:0003061!1.14e-09!102;UBERON:0002193!1.11e-08!112;UBERON:0001474!1.12e-08!86;UBERON:0002371!6.88e-08!80;UBERON:0002405!1.09e-07!115;UBERON:0002616!3.50e-07!59;UBERON:0001049!7.39e-07!57;UBERON:0005068!7.39e-07!57;UBERON:0006241!7.39e-07!57;UBERON:0007135!7.39e-07!57 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.99e-12,114;UBERON:0002390,7.13e-12,98;UBERON:0003061,7.13e-12,98;UBERON:0001474,5.08e-11,82;UBERON:0002193,1.50e-10,108;UBERON:0002371,4.20e-10,76;UBERON:0002405,1.22e-09,93;UBERON:0004765,1.64e-09,90;UBERON:0001434,1.00e-07,100 | |||
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| |||
|short_description=p1@C3orf58 | |||
}} |
Revision as of 21:54, 12 September 2013
Short description: | p1@C3orf58 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_C3orf58_5end |
Coexpression cluster: | NA |
Association with transcript: | 17bp_to_ENST00000315691, NM_173552, uc003evo.2_5end |
EntrezGene: | C3orf58 |
HGNC: | 28490 |
UniProt: | Q8NDZ4B3KTD4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.42e-22 | 136 |
classical monocyte | 1.01e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.01e-19 | 42 |
hematopoietic stem cell | 3.38e-19 | 168 |
hematopoietic lineage restricted progenitor cell | 8.60e-19 | 120 |
hematopoietic oligopotent progenitor cell | 1.14e-17 | 161 |
hematopoietic multipotent progenitor cell | 1.14e-17 | 161 |
defensive cell | 1.63e-17 | 48 |
phagocyte | 1.63e-17 | 48 |
nongranular leukocyte | 4.24e-17 | 115 |
hematopoietic cell | 4.85e-17 | 177 |
myeloid leukocyte | 1.72e-15 | 72 |
granulocyte monocyte progenitor cell | 3.03e-14 | 67 |
myeloid lineage restricted progenitor cell | 3.89e-14 | 66 |
myeloid cell | 1.12e-12 | 108 |
common myeloid progenitor | 1.12e-12 | 108 |
macrophage dendritic cell progenitor | 1.25e-12 | 61 |
monopoietic cell | 5.35e-12 | 59 |
monocyte | 5.35e-12 | 59 |
monoblast | 5.35e-12 | 59 |
promonocyte | 5.35e-12 | 59 |
B cell | 2.70e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.99e-12 | 114 |
hematopoietic system | 7.13e-12 | 98 |
blood island | 7.13e-12 | 98 |
bone element | 5.08e-11 | 82 |
hemolymphoid system | 1.50e-10 | 108 |
bone marrow | 4.20e-10 | 76 |
immune system | 1.22e-09 | 93 |
skeletal element | 1.64e-09 | 90 |
skeletal system | 1.00e-07 | 100 |
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