FFCP PHASE1:Mm9::chr13:40829337..40829360,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=21418|HGNC=|MCL_coexpression_id=1645|UniProt=P34056,Q3UL09,Q8BPN4|association_with_transcript=-145bp_to_ENSMUST00000110192,ENSMUST00000110193,NM_011547,uc007qej.2_5end|description=CAGE_peak_5_at_Tfap2a_5end|id=chr13:40829337..40829360,-|ontology_enrichment_celltype=CL:0000107!1.47e-07!9|ontology_enrichment_celltype_v019_2=CL:0000107,3.18e-10,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001444!1.41e-10!11;UBERON:0000010!2.52e-09!11;UBERON:0000970!7.82e-09!9;UBERON:0000019!7.82e-09!9;UBERON:0000047!7.82e-09!9;UBERON:0004088!7.82e-09!9;UBERON:0002104!7.82e-09!9;UBERON:0001456!7.82e-09!9;UBERON:0003072!7.82e-09!9;UBERON:0003071!7.82e-09!9;UBERON:0004128!7.82e-09!9;UBERON:0003102!1.86e-08!23;UBERON:0005085!7.07e-08!13;UBERON:0002410!1.47e-07!9;UBERON:0000020!1.91e-07!12;UBERON:0001032!1.91e-07!12;UBERON:0004456!1.91e-07!12;UBERON:0004121!7.47e-07!102;UBERON:0000924!7.47e-07!102;UBERON:0006601!7.47e-07!102|ontology_enrichment_uberon_v019_2=UBERON:0001444,5.97e-22,11;UBERON:0000033,3.57e-18,13;UBERON:0000970,5.25e-18,9;UBERON:0000019,5.25e-18,9;UBERON:0000047,5.25e-18,9;UBERON:0010312,5.25e-18,9;UBERON:0004088,5.25e-18,9;UBERON:0002104,5.25e-18,9;UBERON:0001456,5.25e-18,9;UBERON:0003072,5.25e-18,9;UBERON:0004128,5.25e-18,9;UBERON:0003071,5.25e-18,9;UBERON:0003102,1.41e-16,22;UBERON:0000020,2.80e-16,12;UBERON:0001032,2.80e-16,12;UBERON:0004456,2.80e-16,12;UBERON:0005085,1.17e-14,13;UBERON:0000010,5.94e-14,11;UBERON:0000014,3.15e-12,5;UBERON:0001003,3.15e-12,5;UBERON:0002097,3.15e-12,5;UBERON:0002199,3.15e-12,5;UBERON:0007029,3.15e-12,5;UBERON:0007376,3.15e-12,5;UBERON:0002416,3.15e-12,5;UBERON:0007383,3.15e-12,5;UBERON:0004121,4.04e-11,95;UBERON:0000924,4.04e-11,95;UBERON:0006601,4.04e-11,95;UBERON:0000153,2.77e-10,43;UBERON:0002410,3.18e-10,9;UBERON:0002102,4.01e-10,7;UBERON:0004710,4.01e-10,7;UBERON:0005419,4.01e-10,7;UBERON:0005417,4.01e-10,7;UBERON:0005729,4.01e-10,7;UBERON:0010708,9.20e-09,8;UBERON:0000011,3.04e-07,3|phase1_expression=0,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0.419959264876088,0,0,0,0,0,0,0,0.404632921719196,0.528990979272033,1.26766280701236,0,0.889294796111139,0,0,0,0.599200221036809,1.15265491596466,0,0,0,0.285650984403804,0.441737081903227,0,0,0,0,0,0,0,0.182975287204819,0,0,0,0,0,0.711858403995515,0.186399445825301,3.02904773332736,8.08615693142605,0,0,0.679971333707751,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0.506719730950197,0,0,0,0.148442139064825,0.346970653532272,0.608930956624282,0.230615497256059,0,0.117588707135705,0,0.247194967734374,0,0,0,0,0,0,0,0.628340120440365,0,0,0,0,0.299581278809645,0,0,0,0,0,0,0.203678727700633,0.622034853050465,2.0217820674694,4.62972082950243,1.04096354370163,1.60931473103431,2.52086981727489,1.80845781402858,3.33378845841506,7.55870949680614,7.77724313845749,4.39795730256327,1.94011193639558,1.70195472151037,2.63926686245923,0.876782929710299,2.50242524303038,1.74126083261083,2.67516777330327,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571242563048644,1.1270773567308,1.22190796707189,0.387904974335251,0.631222379012867,0,0,0.156998727841375,0.493588655687202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221464689648775,0,0,0,0,0,0,1.96705709207614,0.827810238914197,0.160550589987792,0,0.819674726883377,0,1.26203287766503,0.390438744296638,0.861693590931196,2.15071918157297,4.23317480756549,3.39691836946599,1.21443210502468,1.75353514746787,2.37172666767914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0.220528398054962,16.158852788265,5.00539722757307,7.2375509913787,8.71418111222896,8.53532678674319,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0.954670618015114,0.316335993581135,0.203319467126849,0.432021363287205,0.418176592028937,0.655087691238533,0.404593039154462,0.247960367176008,0,0,3.72803587852155,0,0,0,0,0,0,0,0.13020438484395,0,0,0.288030006257865,0.316011120628178,0,0,0,0,0,0,0,0,0,0.100826185136841,0,0,0,4.0811469050738,0,0,0,0.19318959403219,0,0,1.2862102744744,0.501572104035363,0,0,0,0,0,0,0,0,0,0,1.97195960409936,1.59609949360412,0.853668028770671,0.243106717068294,0.838452650511929,0.367687016900028,0.666740183404846,0.618105171716683,1.28367683836726,0.505394423527595,0.50695859978048,0.188626341386076,0.842773567228942,0.448176066834085,0.516919220600519,0.476293691283074,0.463537303779422,0.578727661391115,0,0.147198920134397,1.71434626192708,0.532427418478012,0.238436189947321,1.30811774969096,0.376437521661322,0.846146078916765,0.365855945745545,0.526139422875686,0.271608227691724,0,0.118635018124174,0.0985044823755635,1.22769312950907,0.77468420592983,0.964533054905707,0.499621155875892,0.467863216890817,1.07435527024149,0.382576664137687,0.441182838239031,0|short_description=p5@Tfap2a}} | ||
|EntrezGene=21418 | |||
|HGNC= | |||
|MCL_coexpression_id=1645 | |||
|UniProt=P34056,Q3UL09,Q8BPN4 | |||
|association_with_transcript=-145bp_to_ENSMUST00000110192,ENSMUST00000110193,NM_011547,uc007qej.2_5end | |||
|description=CAGE_peak_5_at_Tfap2a_5end | |||
|id=chr13:40829337..40829360,- | |||
|ontology_enrichment_celltype=CL:0000107!1.47e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000107,3.18e-10,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001444!1.41e-10!11;UBERON:0000010!2.52e-09!11;UBERON:0000970!7.82e-09!9;UBERON:0000019!7.82e-09!9;UBERON:0000047!7.82e-09!9;UBERON:0004088!7.82e-09!9;UBERON:0002104!7.82e-09!9;UBERON:0001456!7.82e-09!9;UBERON:0003072!7.82e-09!9;UBERON:0003071!7.82e-09!9;UBERON:0004128!7.82e-09!9;UBERON:0003102!1.86e-08!23;UBERON:0005085!7.07e-08!13;UBERON:0002410!1.47e-07!9;UBERON:0000020!1.91e-07!12;UBERON:0001032!1.91e-07!12;UBERON:0004456!1.91e-07!12;UBERON:0004121!7.47e-07!102;UBERON:0000924!7.47e-07!102;UBERON:0006601!7.47e-07!102 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001444,5.97e-22,11;UBERON:0000033,3.57e-18,13;UBERON:0000970,5.25e-18,9;UBERON:0000019,5.25e-18,9;UBERON:0000047,5.25e-18,9;UBERON:0010312,5.25e-18,9;UBERON:0004088,5.25e-18,9;UBERON:0002104,5.25e-18,9;UBERON:0001456,5.25e-18,9;UBERON:0003072,5.25e-18,9;UBERON:0004128,5.25e-18,9;UBERON:0003071,5.25e-18,9;UBERON:0003102,1.41e-16,22;UBERON:0000020,2.80e-16,12;UBERON:0001032,2.80e-16,12;UBERON:0004456,2.80e-16,12;UBERON:0005085,1.17e-14,13;UBERON:0000010,5.94e-14,11;UBERON:0000014,3.15e-12,5;UBERON:0001003,3.15e-12,5;UBERON:0002097,3.15e-12,5;UBERON:0002199,3.15e-12,5;UBERON:0007029,3.15e-12,5;UBERON:0007376,3.15e-12,5;UBERON:0002416,3.15e-12,5;UBERON:0007383,3.15e-12,5;UBERON:0004121,4.04e-11,95;UBERON:0000924,4.04e-11,95;UBERON:0006601,4.04e-11,95;UBERON:0000153,2.77e-10,43;UBERON:0002410,3.18e-10,9;UBERON:0002102,4.01e-10,7;UBERON:0004710,4.01e-10,7;UBERON:0005419,4.01e-10,7;UBERON:0005417,4.01e-10,7;UBERON:0005729,4.01e-10,7;UBERON:0010708,9.20e-09,8;UBERON:0000011,3.04e-07,3 | |||
|phase1_expression=0,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0.419959264876088,0,0,0,0,0,0,0,0.404632921719196,0.528990979272033,1.26766280701236,0,0.889294796111139,0,0,0,0.599200221036809,1.15265491596466,0,0,0,0.285650984403804,0.441737081903227,0,0,0,0,0,0,0,0.182975287204819,0,0,0,0,0,0.711858403995515,0.186399445825301,3.02904773332736,8.08615693142605,0,0,0.679971333707751,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0.506719730950197,0,0,0,0.148442139064825,0.346970653532272,0.608930956624282,0.230615497256059,0,0.117588707135705,0,0.247194967734374,0,0,0,0,0,0,0,0.628340120440365,0,0,0,0,0.299581278809645,0,0,0,0,0,0,0.203678727700633,0.622034853050465,2.0217820674694,4.62972082950243,1.04096354370163,1.60931473103431,2.52086981727489,1.80845781402858,3.33378845841506,7.55870949680614,7.77724313845749,4.39795730256327,1.94011193639558,1.70195472151037,2.63926686245923,0.876782929710299,2.50242524303038,1.74126083261083,2.67516777330327,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571242563048644,1.1270773567308,1.22190796707189,0.387904974335251,0.631222379012867,0,0,0.156998727841375,0.493588655687202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221464689648775,0,0,0,0,0,0,1.96705709207614,0.827810238914197,0.160550589987792,0,0.819674726883377,0,1.26203287766503,0.390438744296638,0.861693590931196,2.15071918157297,4.23317480756549,3.39691836946599,1.21443210502468,1.75353514746787,2.37172666767914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0.220528398054962,16.158852788265,5.00539722757307,7.2375509913787,8.71418111222896,8.53532678674319,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0.954670618015114,0.316335993581135,0.203319467126849,0.432021363287205,0.418176592028937,0.655087691238533,0.404593039154462,0.247960367176008,0,0,3.72803587852155,0,0,0,0,0,0,0,0.13020438484395,0,0,0.288030006257865,0.316011120628178,0,0,0,0,0,0,0,0,0,0.100826185136841,0,0,0,4.0811469050738,0,0,0,0.19318959403219,0,0,1.2862102744744,0.501572104035363,0,0,0,0,0,0,0,0,0,0,1.97195960409936,1.59609949360412,0.853668028770671,0.243106717068294,0.838452650511929,0.367687016900028,0.666740183404846,0.618105171716683,1.28367683836726,0.505394423527595,0.50695859978048,0.188626341386076,0.842773567228942,0.448176066834085,0.516919220600519,0.476293691283074,0.463537303779422,0.578727661391115,0,0.147198920134397,1.71434626192708,0.532427418478012,0.238436189947321,1.30811774969096,0.376437521661322,0.846146078916765,0.365855945745545,0.526139422875686,0.271608227691724,0,0.118635018124174,0.0985044823755635,1.22769312950907,0.77468420592983,0.964533054905707,0.499621155875892,0.467863216890817,1.07435527024149,0.382576664137687,0.441182838239031,0 | |||
|short_description=p5@Tfap2a | |||
}} |
Revision as of 00:29, 13 September 2013
Short description: | p5@Tfap2a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Tfap2a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1645 |
Association with transcript: | -145bp_to_ENSMUST00000110192, ENSMUST00000110193, NM_011547, uc007qej.2_5end |
EntrezGene: | Tfap2a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
autonomic neuron | 3.18e-10 | 9 |
Ontology term | p-value | n |
---|---|---|
subdivision of head | 5.97e-22 | 11 |
head | 3.57e-18 | 13 |
eye | 5.25e-18 | 9 |
camera-type eye | 5.25e-18 | 9 |
simple eye | 5.25e-18 | 9 |
immature eye | 5.25e-18 | 9 |
ocular region | 5.25e-18 | 9 |
visual system | 5.25e-18 | 9 |
face | 5.25e-18 | 9 |
optic cup | 5.25e-18 | 9 |
optic vesicle | 5.25e-18 | 9 |
eye primordium | 5.25e-18 | 9 |
surface structure | 1.41e-16 | 22 |
sense organ | 2.80e-16 | 12 |
sensory system | 2.80e-16 | 12 |
entire sense organ system | 2.80e-16 | 12 |
ectodermal placode | 1.17e-14 | 13 |
peripheral nervous system | 5.94e-14 | 11 |
zone of skin | 3.15e-12 | 5 |
skin epidermis | 3.15e-12 | 5 |
skin of body | 3.15e-12 | 5 |
integument | 3.15e-12 | 5 |
surface | 3.15e-12 | 5 |
outer epithelium | 3.15e-12 | 5 |
integumental system | 3.15e-12 | 5 |
enveloping layer of ectoderm | 3.15e-12 | 5 |
ectoderm-derived structure | 4.04e-11 | 95 |
ectoderm | 4.04e-11 | 95 |
presumptive ectoderm | 4.04e-11 | 95 |
anterior region of body | 2.77e-10 | 43 |
autonomic nervous system | 3.18e-10 | 9 |
forelimb | 4.01e-10 | 7 |
pectoral appendage | 4.01e-10 | 7 |
pectoral appendage bud | 4.01e-10 | 7 |
forelimb bud | 4.01e-10 | 7 |
forelimb/pectoral fin field | 4.01e-10 | 7 |
pectoral complex | 9.20e-09 | 8 |
parasympathetic nervous system | 3.04e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.