FFCP PHASE1:Hg19::chr3:63953435..63953499,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6314|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10560|TSSclassifier=W|UniProt=|association_with_transcript=0bp_to_ENST00000475897,uc010hnw.2,uc011bfn.1_5end|coexpression_cluster_id=C18|description=CAGE_peak_1_at_ATXN7_5end|id=chr3:63953435..63953499,+|ontology_enrichment_celltype=CL:0000037!1.58e-25!172;CL:0000566!1.58e-25!172;CL:0000988!2.98e-22!182;CL:0002032!7.34e-22!165;CL:0000837!7.34e-22!165;CL:0000084!2.39e-15!25;CL:0000827!2.39e-15!25;CL:0000791!7.31e-15!18;CL:0000789!7.31e-15!18;CL:0002420!7.31e-15!18;CL:0002419!7.31e-15!18;CL:0000790!7.31e-15!18;CL:0000738!1.23e-14!140;CL:0000838!2.06e-13!52;CL:0000542!8.01e-13!53;CL:0000051!8.01e-13!53;CL:0002031!1.58e-11!124;CL:0002087!1.49e-10!119;CL:0000763!4.26e-10!112;CL:0000049!4.26e-10!112;CL:0000625!1.22e-09!11|ontology_enrichment_celltype_v019=CL:0000791;3.70e-22;18!CL:0000789;3.70e-22;18!CL:0002419;3.70e-22;18!CL:0000084;5.93e-21;25!CL:0000625;4.62e-14;11!CL:0000624;6.14e-09;6!CL:0000542;6.44e-08;53|ontology_enrichment_celltype_v019_2=CL:0000037,7.93e-28,168;CL:0000988,5.54e-25,177;CL:0002032,6.69e-23,161;CL:0000837,6.69e-23,161;CL:0000791,3.84e-22,18;CL:0000789,3.84e-22,18;CL:0002420,3.84e-22,18;CL:0002419,3.84e-22,18;CL:0000790,3.84e-22,18;CL:0000084,6.93e-21,25;CL:0000827,6.93e-21,25;CL:0000738,1.30e-16,136;CL:0000625,4.71e-14,11;CL:0000838,5.74e-14,52;CL:0000542,1.66e-13,53;CL:0000051,1.66e-13,53;CL:0002031,4.84e-12,120;CL:0002087,4.40e-11,115;CL:0000763,1.96e-10,108;CL:0000049,1.96e-10,108;CL:0000624,6.19e-09,6|ontology_enrichment_development_v019=CL:0000790;3.70e-22;18!CL:0000051;6.44e-08;53|ontology_enrichment_disease=DOID:1240!2.99e-13!39;DOID:8692!8.43e-12!31;DOID:2531!8.78e-10!51;DOID:0060083!8.78e-10!51|ontology_enrichment_disease_v019=DOID:8692;1.40e-10;31!DOID:1240;1.89e-09;39!DOID:2531;3.47e-07;51!DOID:0060083;3.47e-07;51|ontology_enrichment_disease_v019_2=DOID:1240,8.29e-13,39;DOID:8692,3.27e-11,31;DOID:2531,1.29e-09,51;DOID:0060083,1.29e-09,51|ontology_enrichment_uberon=UBERON:0007023!1.12e-22!115;UBERON:0000178!7.61e-08!15;UBERON:0000179!7.61e-08!15;UBERON:0000463!7.61e-08!15|ontology_enrichment_uberon_v019=UBERON:0000178;1.85e-10;15!UBERON:0000179;1.85e-10;15!UBERON:0000463;1.85e-10;15!UBERON:0002390;1.35e-08;32|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.66e-13,114;UBERON:0000178,1.86e-10,15;UBERON:0000179,1.86e-10,15;UBERON:0000463,1.86e-10,15;UBERON:0002390,1.84e-08,98;UBERON:0003061,1.84e-08,98;UBERON:0002193,6.79e-08,108|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0.246242116153576,0.204000691244253,0,0.572471974262113,0,0,0.840547463227464,0.492603536699674,0.865818594450472,11.4075640286182,28.0195460610965,8.05043841243595,0,0,0,0,0,12.6248188913984,6.09394949385065,14.6397446653203,15.4077718208255,1.79132379391939,12.6318529747402,3.34848237924443,0,0,0,0,0,0.619412741790207,0,1.0246428261164,0,0.689491361473237,0,0,0.188242339542605,0.272906150057846,0,0.612167784741805,0.320929027076094,0,0.329851300186716,0,0,0,0.56738522469114,0,0.502497330513487,1.5644487552606,0.434377689410233,0,1.47311054395026,0,0,0.637812899895131,0.209658645508376,1.34794357375794,1.65194582125657,1.28580469357664,0,0,0,1.75996244461323,3.27683166757279,0.889509253863555,0.426730222566507,0,0,1.32208974556972,0,1.70763890732835,0,1.14681968437569,11.8954195721123,7.28661131875997,7.63813845847723,124.910704022284,84.8903247538196,76.2781561288179,21.2326849146161,100.709980389779,99.424039204294,60.3962858064525,19.0511881273647,70.1162059790113,75.5430580530148,103.988683685766,14.0900451698243,12.3556380181884,19.8969864570448,15.7519510137934,36.8049918883517,147.693416909412,171.761211633596,111.853010471325,22.6618685395132,89.2903750092477,80.752449688418,122.967570321478,63.0759520361712,48.8312590392314,43.7207940446252,63.3921251317423,66.681024411452,59.966748745126,62.0356400355324,38.5930158552892,50.4016858061831,34.2323450602889,62.2744936696036,0,0,0.12786256184353,0,0,0,0,0,0.189069634328136,0.221729397462564,0.702678285545008,2.5540919722054,0,0,1.62273696827342,0.348259474598534,0.26591592103773,5.48528435902286,3.43196946468077,9.28643753323912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0.12663051166458,0,0,0,0,0,0,0,0,0.163461903113459,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0.168336113954066,0.250237039743928,0,0,0,0,0.113432183160021,0.179389635688862,0.213557388818567,0,0.600182192168805,0.206105058476878,0,0.18611685633159,0,0.0974370051611986,0.252433774244115,0,0.161646056818812,0,0.10075209822764,0,0,0,0,0.243947412259191,0.265059536642971,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,24.7219335672204,2.58275720940538,0,0,0,0,0.648119116109707,0,0,0,0.927443239800615,0.234817388471643,0,0,0,0,0,1.47730203652438,0,0.445893486866185,0,0,0,0.179117045405697,0.290633938513962,0,0.985326475791887,5.45900290882001,34.2091390642274,62.40393982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,6.95480993050916,5.0921731499126,0,0,0,0,0.730336388246517,7.79839781787719,0.860037498908708,0,0.679914901909147,0,3.1741610430924,0,0,0,0,0,0.760191006068622,0,0,0,0,0.757786982182394,0.267964130156178,0,0.310298987585686,2.98527574661373,1.1903221573187,46.5686039917604,66.9165420109348,0.112131862580613,0.381882949668989,0.404234377916439,1.30630048738177,0.684466602170562,19.7341515332741,2.15166616178029,0.332660356546013,0,0.106727345877715,0,0,0,3.05603610457166,0,1.33151354837103,16.3031772808731,0|short_description=p1@ATXN7}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=6314 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10560 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000475897,uc010hnw.2,uc011bfn.1_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_1_at_ATXN7_5end | |||
|id=chr3:63953435..63953499,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.58e-25!172;CL:0000566!1.58e-25!172;CL:0000988!2.98e-22!182;CL:0002032!7.34e-22!165;CL:0000837!7.34e-22!165;CL:0000084!2.39e-15!25;CL:0000827!2.39e-15!25;CL:0000791!7.31e-15!18;CL:0000789!7.31e-15!18;CL:0002420!7.31e-15!18;CL:0002419!7.31e-15!18;CL:0000790!7.31e-15!18;CL:0000738!1.23e-14!140;CL:0000838!2.06e-13!52;CL:0000542!8.01e-13!53;CL:0000051!8.01e-13!53;CL:0002031!1.58e-11!124;CL:0002087!1.49e-10!119;CL:0000763!4.26e-10!112;CL:0000049!4.26e-10!112;CL:0000625!1.22e-09!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.70e-22;18!CL:0000789;3.70e-22;18!CL:0002419;3.70e-22;18!CL:0000084;5.93e-21;25!CL:0000625;4.62e-14;11!CL:0000624;6.14e-09;6!CL:0000542;6.44e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,7.93e-28,168;CL:0000988,5.54e-25,177;CL:0002032,6.69e-23,161;CL:0000837,6.69e-23,161;CL:0000791,3.84e-22,18;CL:0000789,3.84e-22,18;CL:0002420,3.84e-22,18;CL:0002419,3.84e-22,18;CL:0000790,3.84e-22,18;CL:0000084,6.93e-21,25;CL:0000827,6.93e-21,25;CL:0000738,1.30e-16,136;CL:0000625,4.71e-14,11;CL:0000838,5.74e-14,52;CL:0000542,1.66e-13,53;CL:0000051,1.66e-13,53;CL:0002031,4.84e-12,120;CL:0002087,4.40e-11,115;CL:0000763,1.96e-10,108;CL:0000049,1.96e-10,108;CL:0000624,6.19e-09,6 | |||
|ontology_enrichment_development_v019=CL:0000790;3.70e-22;18!CL:0000051;6.44e-08;53 | |||
|ontology_enrichment_disease=DOID:1240!2.99e-13!39;DOID:8692!8.43e-12!31;DOID:2531!8.78e-10!51;DOID:0060083!8.78e-10!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.40e-10;31!DOID:1240;1.89e-09;39!DOID:2531;3.47e-07;51!DOID:0060083;3.47e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,8.29e-13,39;DOID:8692,3.27e-11,31;DOID:2531,1.29e-09,51;DOID:0060083,1.29e-09,51 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.12e-22!115;UBERON:0000178!7.61e-08!15;UBERON:0000179!7.61e-08!15;UBERON:0000463!7.61e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.85e-10;15!UBERON:0000179;1.85e-10;15!UBERON:0000463;1.85e-10;15!UBERON:0002390;1.35e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.66e-13,114;UBERON:0000178,1.86e-10,15;UBERON:0000179,1.86e-10,15;UBERON:0000463,1.86e-10,15;UBERON:0002390,1.84e-08,98;UBERON:0003061,1.84e-08,98;UBERON:0002193,6.79e-08,108 | |||
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| |||
|short_description=p1@ATXN7 | |||
}} |
Revision as of 01:10, 13 September 2013
Short description: | p1@ATXN7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ATXN7_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000475897, uc010hnw.2, uc011bfn.1_5end |
EntrezGene: | ATXN7 |
HGNC: | 10560 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 7.93e-28 | 168 |
hematopoietic cell | 5.54e-25 | 177 |
hematopoietic oligopotent progenitor cell | 6.69e-23 | 161 |
hematopoietic multipotent progenitor cell | 6.69e-23 | 161 |
mature alpha-beta T cell | 3.84e-22 | 18 |
alpha-beta T cell | 3.84e-22 | 18 |
immature T cell | 3.84e-22 | 18 |
mature T cell | 3.84e-22 | 18 |
immature alpha-beta T cell | 3.84e-22 | 18 |
T cell | 6.93e-21 | 25 |
pro-T cell | 6.93e-21 | 25 |
leukocyte | 1.30e-16 | 136 |
CD8-positive, alpha-beta T cell | 4.71e-14 | 11 |
lymphoid lineage restricted progenitor cell | 5.74e-14 | 52 |
lymphocyte | 1.66e-13 | 53 |
common lymphoid progenitor | 1.66e-13 | 53 |
hematopoietic lineage restricted progenitor cell | 4.84e-12 | 120 |
nongranular leukocyte | 4.40e-11 | 115 |
myeloid cell | 1.96e-10 | 108 |
common myeloid progenitor | 1.96e-10 | 108 |
CD4-positive, alpha-beta T cell | 6.19e-09 | 6 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.66e-13 | 114 |
blood | 1.86e-10 | 15 |
haemolymphatic fluid | 1.86e-10 | 15 |
organism substance | 1.86e-10 | 15 |
hematopoietic system | 1.84e-08 | 98 |
blood island | 1.84e-08 | 98 |
hemolymphoid system | 6.79e-08 | 108 |
Ontology term | p-value | n |
---|---|---|
leukemia | 8.29e-13 | 39 |
myeloid leukemia | 3.27e-11 | 31 |
hematologic cancer | 1.29e-09 | 51 |
immune system cancer | 1.29e-09 | 51 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.