FFCP PHASE1:Hg19::chr4:41750057..41750078,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8929|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9143|TSSclassifier=W|UniProt=|association_with_transcript=-333bp_to_ENST00000510424_5end|coexpression_cluster_id=C85|description=CAGE_peak_3_at_PHOX2B_5end|id=chr4:41750057..41750078,-|ontology_enrichment_celltype=CL:0000333!5.42e-09!41|ontology_enrichment_celltype_v019=CL:0000333;3.21e-71;5!CL:0002321;1.78e-24;15|ontology_enrichment_celltype_v019_2=CL:0000333,4.09e-09,41|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:169!1.62e-41!6;DOID:171!4.15e-25!10;DOID:3095!1.31e-11!22;DOID:2994!1.31e-11!22|ontology_enrichment_disease_v019=DOID:169;1.49e-59;6!DOID:171;3.44e-36;10!DOID:3095;5.41e-17;22!DOID:2994;5.41e-17;22!DOID:5409;2.80e-11;4!DOID:1325;5.38e-07;7!DOID:3904;5.38e-07;7|ontology_enrichment_disease_v019_2=DOID:169,1.22e-59,6;DOID:171,3.05e-36,10;DOID:3095,5.13e-17,22;DOID:2994,5.13e-17,22;DOID:5409,2.80e-11,4;DOID:1325,5.38e-07,7;DOID:3904,5.38e-07,7|ontology_enrichment_uberon=UBERON:0000013!1.05e-49!5;UBERON:0002410!1.05e-49!5;UBERON:0002148!4.04e-31!2;UBERON:0009662!4.04e-31!2;UBERON:0002298!1.97e-30!8;UBERON:0000010!7.57e-28!8;UBERON:0000988!4.02e-21!3;UBERON:0006331!4.02e-21!3;UBERON:0001896!4.46e-21!3;UBERON:0005290!4.46e-21!3;UBERON:0010096!4.46e-21!3;UBERON:0004733!1.93e-20!12;UBERON:0002028!1.93e-20!12;UBERON:0007277!1.93e-20!12;UBERON:0004732!6.70e-19!13;UBERON:0003076!1.97e-16!15;UBERON:0003057!1.97e-16!15;UBERON:0000073!5.26e-12!94;UBERON:0001016!5.26e-12!94;UBERON:0004121!6.17e-08!169;UBERON:0000924!9.87e-08!173;UBERON:0006601!9.87e-08!173;UBERON:0002680!1.13e-07!9;UBERON:0002308!1.13e-07!9;UBERON:0000125!1.13e-07!9;UBERON:0001895!1.13e-07!9;UBERON:0010092!1.13e-07!9;UBERON:0000063!3.28e-07!97|ontology_enrichment_uberon_v019=UBERON:0000013;3.21e-71;5!UBERON:0002410;3.21e-71;5!UBERON:0000010;4.34e-40;8!UBERON:0001871;6.04e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0000013,2.52e-71,5;UBERON:0002410,2.52e-71,5;UBERON:0000010,3.80e-40,8;UBERON:0001016,1.53e-07,89;UBERON:0001871,6.39e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,59.470882656198,0.970423302570136,1.41539347670307,1.31051565830417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,53.541031655024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p3@PHOX2B}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=8929 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9143 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-333bp_to_ENST00000510424_5end | |||
|coexpression_cluster_id=C85 | |||
|description=CAGE_peak_3_at_PHOX2B_5end | |||
|id=chr4:41750057..41750078,- | |||
|ontology_enrichment_celltype=CL:0000333!5.42e-09!41 | |||
|ontology_enrichment_celltype_v019=CL:0000333;3.21e-71;5!CL:0002321;1.78e-24;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000333,4.09e-09,41 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:169!1.62e-41!6;DOID:171!4.15e-25!10;DOID:3095!1.31e-11!22;DOID:2994!1.31e-11!22 | |||
|ontology_enrichment_disease_v019=DOID:169;1.49e-59;6!DOID:171;3.44e-36;10!DOID:3095;5.41e-17;22!DOID:2994;5.41e-17;22!DOID:5409;2.80e-11;4!DOID:1325;5.38e-07;7!DOID:3904;5.38e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.22e-59,6;DOID:171,3.05e-36,10;DOID:3095,5.13e-17,22;DOID:2994,5.13e-17,22;DOID:5409,2.80e-11,4;DOID:1325,5.38e-07,7;DOID:3904,5.38e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0000013!1.05e-49!5;UBERON:0002410!1.05e-49!5;UBERON:0002148!4.04e-31!2;UBERON:0009662!4.04e-31!2;UBERON:0002298!1.97e-30!8;UBERON:0000010!7.57e-28!8;UBERON:0000988!4.02e-21!3;UBERON:0006331!4.02e-21!3;UBERON:0001896!4.46e-21!3;UBERON:0005290!4.46e-21!3;UBERON:0010096!4.46e-21!3;UBERON:0004733!1.93e-20!12;UBERON:0002028!1.93e-20!12;UBERON:0007277!1.93e-20!12;UBERON:0004732!6.70e-19!13;UBERON:0003076!1.97e-16!15;UBERON:0003057!1.97e-16!15;UBERON:0000073!5.26e-12!94;UBERON:0001016!5.26e-12!94;UBERON:0004121!6.17e-08!169;UBERON:0000924!9.87e-08!173;UBERON:0006601!9.87e-08!173;UBERON:0002680!1.13e-07!9;UBERON:0002308!1.13e-07!9;UBERON:0000125!1.13e-07!9;UBERON:0001895!1.13e-07!9;UBERON:0010092!1.13e-07!9;UBERON:0000063!3.28e-07!97 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;3.21e-71;5!UBERON:0002410;3.21e-71;5!UBERON:0000010;4.34e-40;8!UBERON:0001871;6.04e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,2.52e-71,5;UBERON:0002410,2.52e-71,5;UBERON:0000010,3.80e-40,8;UBERON:0001016,1.53e-07,89;UBERON:0001871,6.39e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,59.470882656198,0.970423302570136,1.41539347670307,1.31051565830417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,53.541031655024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@PHOX2B | |||
}} |
Revision as of 10:56, 13 September 2013
Short description: | p3@PHOX2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_PHOX2B_5end |
Coexpression cluster: | C85_neuroblastoma_carcinoid_retinoblastoma_small_pineal_rhabdomyosarcoma_medulloblastoma |
Association with transcript: | -333bp_to_ENST00000510424_5end |
EntrezGene: | PHOX2B |
HGNC: | 9143 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
migratory neural crest cell | 4.09e-09 | 41 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 2.52e-71 | 5 |
autonomic nervous system | 2.52e-71 | 5 |
peripheral nervous system | 3.80e-40 | 8 |
nervous system | 1.53e-07 | 89 |
temporal lobe | 6.39e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.22e-59 | 6 |
neuroectodermal tumor | 3.05e-36 | 10 |
germ cell and embryonal cancer | 5.13e-17 | 22 |
germ cell cancer | 5.13e-17 | 22 |
lung small cell carcinoma | 2.80e-11 | 4 |
bronchus cancer | 5.38e-07 | 7 |
bronchogenic carcinoma | 5.38e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.