FFCP PHASE1:Mm9::chr15:85889176..85889223,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=223752|HGNC=|MCL_coexpression_id=58|UniProt=D3YUE7|association_with_transcript=0bp_to_uc007xdw.2_5end|description=CAGE_peak_1_at_Gramd4_5end|id=chr15:85889176..85889223,+|ontology_enrichment_celltype=CL:0000548!3.75e-10!115;CL:0000004!3.75e-10!115;CL:0000255!3.75e-10!115;CL:0002371!1.24e-08!118;CL:0000144!1.28e-08!121;CL:0000012!1.28e-08!121;CL:0000393!5.18e-07!39;CL:0000211!5.18e-07!39|ontology_enrichment_celltype_v019_2=CL:0000393,5.18e-07,39;CL:0000211,5.18e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000064!3.99e-08!99;UBERON:0004923!9.67e-08!24|ontology_enrichment_uberon_v019_2=UBERON:0004923,9.67e-08,24|phase1_expression=8.0074423552397,98.0620895466605,90.9998478779072,31.7587421872172,27.5492651470491,43.4807314251795,38.0788604170707,22.5965816022758,20.1327872676883,20.3636137900134,13.8686554262659,13.3219505522212,25.3377080298184,21.5054189950734,32.3116468961193,44.9495093605414,52.467140859611,23.5019313191887,24.8177124826387,32.2536135366503,4.93251082876205,11.7163322417045,9.66439219814061,37.4382269336572,46.7994933377027,63.7397480167672,64.1835374277021,43.5251890025496,8.7410772949932,6.80481350351813,13.5255611499736,8.89042942843484,10.4561013889377,0,10.6875099307972,8.31173226792462,10.6168065256432,0.418531630736908,2.3440060335714,1.57057123192139,1.17646297606203,0,1.45653105909346,10.1976422560218,12.5707394712198,15.0508336772579,7.04152209913235,7.84890562969608,10.9843091367236,7.77719596297134,7.97922603264566,4.31257693094915,23.1539996359676,32.6412963905105,33.6093799142464,24.6969058594509,15.4728057566929,20.6268836910977,14.1621522601718,24.3335850465135,15.2119536841483,11.8595586224196,8.89294796111139,3.5995988691256,4.94433181283487,2.1314403448383,6.5912024314049,7.68436610643109,18.5604406032175,19.9808788730902,16.8259969081106,7.9982275633065,7.50953039235486,14.4539143073646,14.9518934788449,20.2228133054205,8.8092704799511,3.57524546638526,4.6081959976873,18.2003077067668,13.4486836095542,9.37644067002168,4.18774498502071,6.75315132038016,6.1119299110724,5.59794312399969,6.69146899755784,13.2343606535963,10.5259408733126,6.57472572929034,12.7540375028738,1.72084775396277,4.0798280022465,2.69851595818909,0.649776417447669,1.34408066129201,4.91555470461132,5.45377032249785,7.27400812888033,7.0667914902068,9.99988280414432,10.2661181931454,12.7402619853323,0,5.19578498426914,6.58735650235256,5.05524445014783,5.02409070763864,10.3575153458869,4.30482203287992,6.93941307064543,4.87144765299426,6.6878494204257,5.87818298155228,5.05631440683531,3.26733137457156,11.3709685157812,5.06097749219691,7.96149496754887,5.01477234836968,11.0420759230197,16.0008833534623,20.5030937339934,16.3957246326466,12.1479089951804,10.9846533739694,6.70964697233154,6.59893004092748,6.60765180779936,9.43681028250383,7.32000964509802,12.5654352112864,9.21268897019065,8.43861009190091,6.02585329222724,6.16516799657479,7.73979165262404,8.21086006026614,4.29628689337247,13.2578369208479,3.90361328888111,3.90833577536904,7.38254732201932,7.9873553452929,6.87168641428411,8.45550553880009,8.33945348581587,6.20888089773638,6.03590380211958,5.29497024469894,7.38994721488585,7.45265490253754,10.5657954705727,9.05455632957633,7.20237477427802,10.7478504081986,4.21327912387941,4.63226232806487,4.26245249093389,2.89976081549703,4.45599513964083,5.94204802821349,6.39210786080068,9.05115466038058,9.41029388613007,13.0219009060228,12.0723030629829,12.0268302638185,14.4812667923863,9.68588038066662,12.4845966700618,12.5731989185786,12.953456802172,15.165325319922,6.9395683026162,13.9950272835827,13.5471701023357,15.073682299822,4.26576501070468,5.10920678092965,5.92790322081629,5.84882221407693,6.0042071838115,3.23383564391351,6.16887780007865,3.45867804920423,3.77002813200404,3.78017296878187,5.8489226135736,9.88701349519644,5.61958929674205,10.5544874824815,4.74169752382704,7.08340778180319,9.01661885384643,5.49858585182348,6.7883370508669,7.85521182771568,6.38689024954999,5.90440591918409,6.27994911365499,6.41665252393363,2.07516838961004,9.67701613153345,10.4176267409998,12.367416181167,10.5487263122022,9.88826354984909,12.731292589071,10.9324532231308,6.16113861745134,6.04035109013779,4.31304619582064,5.58211421502755,2.80833905803104,2.27320990152401,2.69096120282868,5.78932225636041,7.7596339869974,6.06372517665551,4.88894929326078,4.58311731593008,9.15291968325158,6.19773152534718,9.04565835366852,11.9031525193257,5.35959489961049,5.3151525515706,6.53764551495697,6.22680595919804,9.84304396635605,8.82359257347221,0,0.54390568381871,4.42587845717133,3.03530420935206,6.42202359951168,5.86058432961016,4.26230857979356,6.05930225290495,10.4117712407365,10.9322848403059,14.0025208526319,8.60287672629187,11.8083297263669,15.8522857241746,14.5731852602962,14.6127928955656,14.2303600060748,8.67567554338879,7.80670468645477,12.8207234640424,12.2165219515182,7.75359577970917,7.96470830039777,5.09839335925461,3.02323556964751,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| ||
|EntrezGene=223752 | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|UniProt=D3YUE7 | |||
|association_with_transcript=0bp_to_uc007xdw.2_5end | |||
|description=CAGE_peak_1_at_Gramd4_5end | |||
|id=chr15:85889176..85889223,+ | |||
|ontology_enrichment_celltype=CL:0000548!3.75e-10!115;CL:0000004!3.75e-10!115;CL:0000255!3.75e-10!115;CL:0002371!1.24e-08!118;CL:0000144!1.28e-08!121;CL:0000012!1.28e-08!121;CL:0000393!5.18e-07!39;CL:0000211!5.18e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,5.18e-07,39;CL:0000211,5.18e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000064!3.99e-08!99;UBERON:0004923!9.67e-08!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004923,9.67e-08,24 | |||
|phase1_expression=8.0074423552397,98.0620895466605,90.9998478779072,31.7587421872172,27.5492651470491,43.4807314251795,38.0788604170707,22.5965816022758,20.1327872676883,20.3636137900134,13.8686554262659,13.3219505522212,25.3377080298184,21.5054189950734,32.3116468961193,44.9495093605414,52.467140859611,23.5019313191887,24.8177124826387,32.2536135366503,4.93251082876205,11.7163322417045,9.66439219814061,37.4382269336572,46.7994933377027,63.7397480167672,64.1835374277021,43.5251890025496,8.7410772949932,6.80481350351813,13.5255611499736,8.89042942843484,10.4561013889377,0,10.6875099307972,8.31173226792462,10.6168065256432,0.418531630736908,2.3440060335714,1.57057123192139,1.17646297606203,0,1.45653105909346,10.1976422560218,12.5707394712198,15.0508336772579,7.04152209913235,7.84890562969608,10.9843091367236,7.77719596297134,7.97922603264566,4.31257693094915,23.1539996359676,32.6412963905105,33.6093799142464,24.6969058594509,15.4728057566929,20.6268836910977,14.1621522601718,24.3335850465135,15.2119536841483,11.8595586224196,8.89294796111139,3.5995988691256,4.94433181283487,2.1314403448383,6.5912024314049,7.68436610643109,18.5604406032175,19.9808788730902,16.8259969081106,7.9982275633065,7.50953039235486,14.4539143073646,14.9518934788449,20.2228133054205,8.8092704799511,3.57524546638526,4.6081959976873,18.2003077067668,13.4486836095542,9.37644067002168,4.18774498502071,6.75315132038016,6.1119299110724,5.59794312399969,6.69146899755784,13.2343606535963,10.5259408733126,6.57472572929034,12.7540375028738,1.72084775396277,4.0798280022465,2.69851595818909,0.649776417447669,1.34408066129201,4.91555470461132,5.45377032249785,7.27400812888033,7.0667914902068,9.99988280414432,10.2661181931454,12.7402619853323,0,5.19578498426914,6.58735650235256,5.05524445014783,5.02409070763864,10.3575153458869,4.30482203287992,6.93941307064543,4.87144765299426,6.6878494204257,5.87818298155228,5.05631440683531,3.26733137457156,11.3709685157812,5.06097749219691,7.96149496754887,5.01477234836968,11.0420759230197,16.0008833534623,20.5030937339934,16.3957246326466,12.1479089951804,10.9846533739694,6.70964697233154,6.59893004092748,6.60765180779936,9.43681028250383,7.32000964509802,12.5654352112864,9.21268897019065,8.43861009190091,6.02585329222724,6.16516799657479,7.73979165262404,8.21086006026614,4.29628689337247,13.2578369208479,3.90361328888111,3.90833577536904,7.38254732201932,7.9873553452929,6.87168641428411,8.45550553880009,8.33945348581587,6.20888089773638,6.03590380211958,5.29497024469894,7.38994721488585,7.45265490253754,10.5657954705727,9.05455632957633,7.20237477427802,10.7478504081986,4.21327912387941,4.63226232806487,4.26245249093389,2.89976081549703,4.45599513964083,5.94204802821349,6.39210786080068,9.05115466038058,9.41029388613007,13.0219009060228,12.0723030629829,12.0268302638185,14.4812667923863,9.68588038066662,12.4845966700618,12.5731989185786,12.953456802172,15.165325319922,6.9395683026162,13.9950272835827,13.5471701023357,15.073682299822,4.26576501070468,5.10920678092965,5.92790322081629,5.84882221407693,6.0042071838115,3.23383564391351,6.16887780007865,3.45867804920423,3.77002813200404,3.78017296878187,5.8489226135736,9.88701349519644,5.61958929674205,10.5544874824815,4.74169752382704,7.08340778180319,9.01661885384643,5.49858585182348,6.7883370508669,7.85521182771568,6.38689024954999,5.90440591918409,6.27994911365499,6.41665252393363,2.07516838961004,9.67701613153345,10.4176267409998,12.367416181167,10.5487263122022,9.88826354984909,12.731292589071,10.9324532231308,6.16113861745134,6.04035109013779,4.31304619582064,5.58211421502755,2.80833905803104,2.27320990152401,2.69096120282868,5.78932225636041,7.7596339869974,6.06372517665551,4.88894929326078,4.58311731593008,9.15291968325158,6.19773152534718,9.04565835366852,11.9031525193257,5.35959489961049,5.3151525515706,6.53764551495697,6.22680595919804,9.84304396635605,8.82359257347221,0,0.54390568381871,4.42587845717133,3.03530420935206,6.42202359951168,5.86058432961016,4.26230857979356,6.05930225290495,10.4117712407365,10.9322848403059,14.0025208526319,8.60287672629187,11.8083297263669,15.8522857241746,14.5731852602962,14.6127928955656,14.2303600060748,8.67567554338879,7.80670468645477,12.8207234640424,12.2165219515182,7.75359577970917,7.96470830039777,5.09839335925461,3.02323556964751,4.14931175462976,4.72483028609236,7.68587869859819,7.75284879504663,5.45300594216258,10.6949213515416,6.0046984007805,9.48767477174989,3.09406629744561,4.76615448055303,3.78128297465751,7.50280365939976,6.43011105094777,5.49754724291048,8.56170324489939,6.58196082408484,6.39376393140658,3.75474732901937,8.47328283455281,3.74898276693435,8.40919890001548,8.88054346827481,5.36785031860587,8.11731939221328,6.07321329056727,6.41257840585672,5.93360966433631,15.036637510211,8.2554747185289,12.222838806401,15.6345819313894,15.5831419601969,15.328137604837,5.94924504978494,8.6769900440668,8.7065983496787,21.0027535963325,4.4287039101359,4.87966721104437,4.53622431451565,6.06356058441959,7.86105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| |||
|short_description=p1@Gramd4 | |||
}} | |||
Revision as of 11:29, 13 September 2013
| Short description: | p1@Gramd4 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Gramd4_5end |
| Coexpression cluster: | MCL_coexpression_mm9:58 |
| Association with transcript: | 0bp_to_uc007xdw.2_5end |
| EntrezGene: | Gramd4 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| electrically responsive cell | 5.18e-07 | 39 |
| electrically active cell | 5.18e-07 | 39 |
| Ontology term | p-value | n |
|---|---|---|
| organ component layer | 9.67e-08 | 24 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
