FFCP PHASE1:Hg19::chr5:122110718..122110800,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6643|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11173|TSSclassifier=S|UniProt=D6RC15,D6RBT1,B3KN57,O60749|association_with_transcript=0bp_to_ENST00000505854,ENST00000505934,ENST00000506874,ENST00000512394,NM_003100,uc003kte.2_5end|coexpression_cluster_id=C813|description=CAGE_peak_1_at_SNX2_5end|id=chr5:122110718..122110800,+|ontology_enrichment_celltype=CL:0000839!7.02e-32!70;CL:0002194!3.51e-31!63;CL:0000576!3.51e-31!63;CL:0000040!3.51e-31!63;CL:0000559!3.51e-31!63;CL:0000557!9.14e-31!71;CL:0002009!1.34e-30!65;CL:0000766!3.05e-28!76;CL:0000763!1.05e-27!112;CL:0000049!1.05e-27!112;CL:0000037!1.89e-26!172;CL:0000566!1.89e-26!172;CL:0002031!2.16e-26!124;CL:0002087!5.50e-26!119;CL:0002032!7.13e-26!165;CL:0000837!7.13e-26!165;CL:0000738!1.48e-25!140;CL:0000860!1.34e-23!45;CL:0002057!4.49e-23!42;CL:0000988!2.46e-21!182;CL:0000134!1.28e-07!358;CL:0000236!1.43e-07!14;CL:0002320!2.13e-07!365|ontology_enrichment_celltype_v019=CL:0000473;2.13e-17;39!CL:0000234;2.13e-17;39!CL:0000576;4.49e-17;48!CL:0000860;7.24e-17;33!CL:0002057;7.24e-17;33!CL:0000766;5.47e-13;69!CL:0000763;4.15e-08;100!CL:0000236;6.19e-08;13!CL:0002087;4.43e-07;104!CL:0000738;8.15e-07;136|ontology_enrichment_celltype_v019_2=CL:0000839,8.37e-32,66;CL:0002194,3.38e-31,59;CL:0000576,3.38e-31,59;CL:0000040,3.38e-31,59;CL:0000559,3.38e-31,59;CL:0000557,1.20e-30,67;CL:0002009,1.45e-30,61;CL:0000766,5.19e-28,72;CL:0000763,2.99e-27,108;CL:0000049,2.99e-27,108;CL:0000473,7.91e-27,48;CL:0000234,7.91e-27,48;CL:0002031,6.84e-26,120;CL:0000037,7.26e-26,168;CL:0002087,1.69e-25,115;CL:0002032,2.68e-25,161;CL:0000837,2.68e-25,161;CL:0000738,5.07e-25,136;CL:0000860,4.49e-23,42;CL:0002057,4.49e-23,42;CL:0000988,2.21e-21,177;CL:0000236,1.43e-07,14;CL:0000134,1.95e-07,354;CL:0002320,3.22e-07,361|ontology_enrichment_development_v019=CL:0002057;5.92e-17;42!CL:0000049;1.10e-08;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!5.39e-27!80;UBERON:0002390!1.95e-26!102;UBERON:0003061!1.95e-26!102;UBERON:0001474!1.21e-24!86;UBERON:0002193!1.44e-22!112;UBERON:0004765!1.22e-21!101;UBERON:0001434!1.22e-21!101;UBERON:0002405!7.62e-18!115;UBERON:0007023!3.20e-07!115;UBERON:0002384!3.27e-07!375;UBERON:0002204!6.47e-07!167|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.05e-26,76;UBERON:0002390,5.20e-26,98;UBERON:0003061,5.20e-26,98;UBERON:0001474,2.81e-24,82;UBERON:0004765,1.83e-22,90;UBERON:0002193,4.39e-22,108;UBERON:0001434,4.10e-21,100;UBERON:0002405,3.19e-20,93;UBERON:0007023,4.27e-07,114;UBERON:0002384,4.94e-07,371;UBERON:0002204,6.57e-07,167|phase1_expression=73.761421983846,55.6661362116556,53.703627960565,51.0373821600965,55.4231757089837,42.7445876809181,27.8629865985142,23.3736353167927,32.38701789678,6.63481628554074,5.58240934377942,8.08233076881637,14.5071838025649,57.4275877734616,56.3375538737457,81.3513427206648,66.8990926106614,56.9641870502151,50.7450110742127,7.26414242653049,8.36402834101437,12.5381888591235,34.0620824685957,28.1961315650141,25.485155837745,52.0375293143548,53.6116849108146,56.0420762953396,38.5496991311926,75.6143914251509,76.4791649181415,16.5495820406207,8.73497164456925,14.0506523863379,71.2698245338775,83.5955087026039,54.0224808376119,68.1414352494209,83.6270345950491,94.6167396321114,209.808799362809,143.161000380389,183.393804155541,190.762489278789,192.716731281293,206.196452009644,155.030167616092,136.507738823246,113.042825376713,132.626192860511,169.578387722265,117.295186024738,144.103694547907,131.033390767517,119.175308203021,143.06417805238,125.536829026609,116.182041458109,152.429778400709,112.646088503709,158.555607198162,185.376430704934,181.511928435685,163.244079454022,109.989301440233,68.0862269629368,62.9050471485531,128.890565276709,138.192973381353,114.241332314891,148.322878145175,101.644627532568,100.635039206201,182.524567373518,200.273250567071,189.112098248555,147.375164064202,178.259971802868,170.851298658996,164.737365882442,222.388845108583,199.83458421851,281.593991138116,331.506137036114,348.687627514514,310.232871805851,332.729065226926,307.492555375649,329.200346646861,347.275566650873,396.172226500176,253.686465808246,314.610866747063,66.0856642895129,51.0062792313198,75.327848245672,41.8991810342464,41.6591408514115,51.8115777478763,39.2888264168093,59.9696970605806,47.3447805734733,52.6032166701361,42.0017422457104,60.3942110323416,59.1495498538268,51.994341842883,54.0545369242349,46.3011277313167,25.8167510227772,28.4640518319424,25.2128684589496,44.4859689486181,39.8635833853672,60.6306038068865,34.4460401800601,50.5851051554536,56.3549010591513,54.3992337841931,36.316457232947,45.5758417699493,48.4730542668671,48.6357634621206,41.7236352363404,44.9750615588445,49.2496684251555,48.4465518183417,38.5068879559239,48.1392352410313,54.5988002638152,75.5801285573281,61.0337782330309,60.6068543138334,36.5053543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617995,39.9736768997197,56.9960063856478,57.4295317175252,63.4606221936444,115.747023450597,86.362146203686,118.584910835487,71.4189470485179,45.4679881194381,47.1226035089738,16.998928647669,59.5339851693306,61.652962718572,31.213377446176,45.2900637619528,41.9638523158333,47.2778717625059,34.2756915093786,40.9734283307391,45.60712313821,43.4654360004215,28.6847975622303,40.3892348193197,42.3860313765787,62.0095858950301,41.6585699355978,117.267414816864,28.0199761899914,41.26308541181,22.0496743694304,40.2074949103837,69.4313223995366,61.2994018779461,54.1507201595593,72.8487202080765,18.2575146505535,55.0631951604612,82.8062637503095,42.6942575479461,33.5034014307583,39.437148682161,21.9498765685643,35.4685348784465,33.8276363769449,45.1539824203944,54.9035396949578,37.9205529162618,39.8572145728877,396.526735444874,61.5782409837964,18.3341546909136,33.025878878395,80.4510441572263,62.83278613636,29.3615201197789,56.3384053288766,86.0764693965776,60.0415525851046,52.7613733078862,53.4046947533508,107.676069011536,72.9735677214848,89.8309094270215,68.2986574053893,57.213028754902,48.6287427485388,52.6468188972875,44.9279934976858,22.6258341056201,46.6865671491674,34.0368089789732,56.9859854094732,57.5043059092567,79.5972943811161,156.150141207124,38.4351112369146,59.2412092979942,31.7355856144354,40.451484603578,31.7339091254982,43.2907098033423,32.8701659539404,85.5802757993342,72.0431973336469,67.743446857781,24.9531868115761,121.053636747368,125.945412234035,68.5887021309305,43.0720912862814,59.5596260475494,34.3994018031876,123.376541272965,57.6141871321476,34.2589369200177,38.1983013940858,27.410969430618,47.5523916848662,79.1708918686397,49.1272873270422,41.580712008726,95.1360726220549,32.4155255451815,54.6404368224783,31.5512343054348,50.3175510863799,121.956234761208,28.6893550780529,79.6732045700193,45.9569266848171,72.4378243654148,78.7172960866778,64.6663263202602,36.7042567725684,86.3712206234854,52.2753471465711,51.4696953013384,33.7466943964693,55.7573897310793,30.0905125084381,86.179693813089,74.3141439115356,64.5028124181531,43.0716364787394,20.0574896063198,51.9257321505049,80.9411065988563,54.6832676705124,83.6537887822867,50.6173077684833,90.7136594564218,109.047040819768,23.4392226871158,78.429410071584,110.628005779942,129.663703243666,87.9983462916237,44.0274236647971,38.8547988726459,65.5043857172436,68.2657772688508,56.080537239958,107.367058590147,30.4859654425949,41.7762827211124,53.0383710006301,64.0290412278339,128.142297799511,46.8091007978467,65.708793808374,44.3176508835986,48.4842108454492,82.8324287799573,37.1198904866044,69.1593201287596,38.614456457388,31.2591703330922,70.3922827210363,33.7386385944711,100.910252222303,73.2332451604064,96.0075995429195,51.2909587685173|short_description=p1@SNX2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=6643 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11173 | |||
|TSSclassifier=S | |||
|UniProt=D6RC15,D6RBT1,B3KN57,O60749 | |||
|association_with_transcript=0bp_to_ENST00000505854,ENST00000505934,ENST00000506874,ENST00000512394,NM_003100,uc003kte.2_5end | |||
|coexpression_cluster_id=C813 | |||
|description=CAGE_peak_1_at_SNX2_5end | |||
|id=chr5:122110718..122110800,+ | |||
|ontology_enrichment_celltype=CL:0000839!7.02e-32!70;CL:0002194!3.51e-31!63;CL:0000576!3.51e-31!63;CL:0000040!3.51e-31!63;CL:0000559!3.51e-31!63;CL:0000557!9.14e-31!71;CL:0002009!1.34e-30!65;CL:0000766!3.05e-28!76;CL:0000763!1.05e-27!112;CL:0000049!1.05e-27!112;CL:0000037!1.89e-26!172;CL:0000566!1.89e-26!172;CL:0002031!2.16e-26!124;CL:0002087!5.50e-26!119;CL:0002032!7.13e-26!165;CL:0000837!7.13e-26!165;CL:0000738!1.48e-25!140;CL:0000860!1.34e-23!45;CL:0002057!4.49e-23!42;CL:0000988!2.46e-21!182;CL:0000134!1.28e-07!358;CL:0000236!1.43e-07!14;CL:0002320!2.13e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.13e-17;39!CL:0000234;2.13e-17;39!CL:0000576;4.49e-17;48!CL:0000860;7.24e-17;33!CL:0002057;7.24e-17;33!CL:0000766;5.47e-13;69!CL:0000763;4.15e-08;100!CL:0000236;6.19e-08;13!CL:0002087;4.43e-07;104!CL:0000738;8.15e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000839,8.37e-32,66;CL:0002194,3.38e-31,59;CL:0000576,3.38e-31,59;CL:0000040,3.38e-31,59;CL:0000559,3.38e-31,59;CL:0000557,1.20e-30,67;CL:0002009,1.45e-30,61;CL:0000766,5.19e-28,72;CL:0000763,2.99e-27,108;CL:0000049,2.99e-27,108;CL:0000473,7.91e-27,48;CL:0000234,7.91e-27,48;CL:0002031,6.84e-26,120;CL:0000037,7.26e-26,168;CL:0002087,1.69e-25,115;CL:0002032,2.68e-25,161;CL:0000837,2.68e-25,161;CL:0000738,5.07e-25,136;CL:0000860,4.49e-23,42;CL:0002057,4.49e-23,42;CL:0000988,2.21e-21,177;CL:0000236,1.43e-07,14;CL:0000134,1.95e-07,354;CL:0002320,3.22e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;5.92e-17;42!CL:0000049;1.10e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!5.39e-27!80;UBERON:0002390!1.95e-26!102;UBERON:0003061!1.95e-26!102;UBERON:0001474!1.21e-24!86;UBERON:0002193!1.44e-22!112;UBERON:0004765!1.22e-21!101;UBERON:0001434!1.22e-21!101;UBERON:0002405!7.62e-18!115;UBERON:0007023!3.20e-07!115;UBERON:0002384!3.27e-07!375;UBERON:0002204!6.47e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.05e-26,76;UBERON:0002390,5.20e-26,98;UBERON:0003061,5.20e-26,98;UBERON:0001474,2.81e-24,82;UBERON:0004765,1.83e-22,90;UBERON:0002193,4.39e-22,108;UBERON:0001434,4.10e-21,100;UBERON:0002405,3.19e-20,93;UBERON:0007023,4.27e-07,114;UBERON:0002384,4.94e-07,371;UBERON:0002204,6.57e-07,167 | |||
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|short_description=p1@SNX2 | |||
}} |
Revision as of 12:53, 13 September 2013
Short description: | p1@SNX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SNX2_5end |
Coexpression cluster: | C813_CD19_CD14CD16_CD14_Macrophage_Monocytederived_pancreatic_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000505854, ENST00000505934, ENST00000506874, ENST00000512394, NM_003100, uc003kte.2_5end |
EntrezGene: | SNX2 |
HGNC: | 11173 |
UniProt: | D6RC15D6RBT1B3KN57O60749 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid lineage restricted progenitor cell | 8.37e-32 | 66 |
monopoietic cell | 3.38e-31 | 59 |
monocyte | 3.38e-31 | 59 |
monoblast | 3.38e-31 | 59 |
promonocyte | 3.38e-31 | 59 |
granulocyte monocyte progenitor cell | 1.20e-30 | 67 |
macrophage dendritic cell progenitor | 1.45e-30 | 61 |
myeloid leukocyte | 5.19e-28 | 72 |
myeloid cell | 2.99e-27 | 108 |
common myeloid progenitor | 2.99e-27 | 108 |
defensive cell | 7.91e-27 | 48 |
phagocyte | 7.91e-27 | 48 |
hematopoietic lineage restricted progenitor cell | 6.84e-26 | 120 |
hematopoietic stem cell | 7.26e-26 | 168 |
nongranular leukocyte | 1.69e-25 | 115 |
hematopoietic oligopotent progenitor cell | 2.68e-25 | 161 |
hematopoietic multipotent progenitor cell | 2.68e-25 | 161 |
leukocyte | 5.07e-25 | 136 |
classical monocyte | 4.49e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.49e-23 | 42 |
hematopoietic cell | 2.21e-21 | 177 |
B cell | 1.43e-07 | 14 |
mesenchymal cell | 1.95e-07 | 354 |
connective tissue cell | 3.22e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.05e-26 | 76 |
hematopoietic system | 5.20e-26 | 98 |
blood island | 5.20e-26 | 98 |
bone element | 2.81e-24 | 82 |
skeletal element | 1.83e-22 | 90 |
hemolymphoid system | 4.39e-22 | 108 |
skeletal system | 4.10e-21 | 100 |
immune system | 3.19e-20 | 93 |
adult organism | 4.27e-07 | 114 |
connective tissue | 4.94e-07 | 371 |
musculoskeletal system | 6.57e-07 | 167 |
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