FFCP PHASE1:Hg19::chr5:52775648..52775678,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C4504|description=CAGE_peak_at_chr5:52775648..52775678,+|id=chr5:52775648..52775678,+|ontology_enrichment_celltype=CL:0000057!6.20e-17!75;CL:0000055!3.14e-14!180;CL:0000548!2.09e-11!679;CL:0000004!2.09e-11!679;CL:0000255!2.09e-11!679;CL:0000012!4.48e-11!682;CL:0002620!2.64e-10!23;CL:0002077!4.86e-09!33;CL:0002159!6.72e-09!13;CL:0000063!2.51e-08!578;CL:0002371!4.39e-08!591;CL:0000003!1.08e-07!722;CL:0000144!1.84e-07!625;CL:0002076!5.44e-07!43;CL:0000066!5.46e-07!254;CL:0002368!6.14e-07!13;CL:0000221!8.55e-07!71|ontology_enrichment_celltype_v019=CL:0002159;1.70e-15;14!CL:0002368;3.57e-13;13!CL:0002328;3.37e-12;3!CL:0002076;3.20e-11;42!CL:0002202;1.78e-10;9!CL:0002632;1.78e-10;9!CL:0000362;5.83e-10;9!CL:0000240;7.91e-10;6!CL:0000311;7.91e-10;6!CL:0000079;7.91e-10;6!CL:0000237;7.91e-10;6!CL:0002077;9.77e-10;34!CL:0000244;3.16e-09;4!CL:0000731;3.16e-09;4!CL:0000317;8.30e-09;2!CL:1000448;8.30e-09;2!CL:0002308;8.30e-09;2!CL:0002140;8.30e-09;2!CL:0000575;1.41e-08;2!CL:0000312;7.95e-07;5|ontology_enrichment_celltype_v019_2=CL:0002159,9.60e-16,14;CL:0002076,3.35e-14,42;CL:0002368,2.58e-13,13;CL:0002328,3.33e-12,3;CL:0002077,6.61e-11,34;CL:0002202,1.92e-10,9;CL:0002632,1.92e-10,9;CL:0000362,4.83e-10,9;CL:0000240,5.92e-10,6;CL:0000311,5.92e-10,6;CL:0000079,5.92e-10,6;CL:0000237,5.92e-10,6;CL:0000036,5.92e-10,6;CL:0000357,5.92e-10,6;CL:0000114,5.92e-10,6;CL:0000223,2.11e-09,58;CL:0000244,3.50e-09,4;CL:0000731,3.50e-09,4;CL:0000066,6.96e-09,253;CL:0000317,8.18e-09,2;CL:1000448,8.18e-09,2;CL:0002308,8.18e-09,2;CL:0002140,8.18e-09,2;CL:0000575,1.24e-08,2;CL:0000312,6.55e-07,5|ontology_enrichment_development_v019=CL:0000357;7.91e-10;6!CL:0000114;7.91e-10;6|ontology_enrichment_disease=DOID:1749!4.13e-07!14|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003102!8.37e-18!95;UBERON:0002097!1.32e-12!40;UBERON:0002199!7.06e-11!45;UBERON:0002416!7.06e-11!45;UBERON:0000165!9.41e-08!28;UBERON:0000930!9.41e-08!28;UBERON:0000475!1.42e-07!365|ontology_enrichment_uberon_v019=UBERON:0004815;3.37e-12;3!UBERON:0002031;3.37e-12;3!UBERON:0003729;1.09e-09;13!UBERON:0000165;7.08e-09;28!UBERON:0002419;8.30e-09;2!UBERON:0007771;8.30e-09;2!UBERON:0003297;8.30e-09;2!UBERON:0001821;8.30e-09;2!UBERON:0003487;8.30e-09;2!UBERON:0001820;8.30e-09;2!UBERON:0001003;4.01e-08;15!UBERON:0007376;4.01e-08;15!UBERON:0002185;1.79e-07;5!UBERON:0000365;1.87e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0004815,3.33e-12,3;UBERON:0002031,3.33e-12,3;UBERON:0003102,4.20e-12,99;UBERON:0003729,8.48e-10,13;UBERON:0002419,8.18e-09,2;UBERON:0007771,8.18e-09,2;UBERON:0003297,8.18e-09,2;UBERON:0001821,8.18e-09,2;UBERON:0003487,8.18e-09,2;UBERON:0001820,8.18e-09,2;UBERON:0005089,8.18e-09,2;UBERON:0005088,8.18e-09,2;UBERON:0000165,1.58e-08,29;UBERON:0000930,1.58e-08,29;UBERON:0001003,2.90e-08,15;UBERON:0007376,2.90e-08,15;UBERON:0007383,2.90e-08,15;UBERON:0002185,1.78e-07,5;UBERON:0000365,2.03e-07,5;UBERON:0000033,7.50e-07,56;UBERON:0001444,8.78e-07,49|phase1_expression=0.363356758541113,0.856402095563933,0.422863212287913,2.00146596706261,0.446961094427288,0.872338524100369,0,0,0,0.245733936501509,0,0,0,0,0,0.672325146451775,0.602694528023977,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,5.51652734687356,3.31326510656075,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0.670700859703636,0.12786256184353,0.361439152384566,2.00535164254356,0.289693037921647,0,0,0,0,0.087834785693126,0,6.19301990097322,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,4.36094052142534,0,0.25326102332916,1.05927344650575,0.860509862246441,1.06400514659507,0.560677600142307,0,0,0.311211035399766,0,0,0,0,0,0.312160076830321,0,0.298897361103602,0.587172493218824,0.323745888736263,0.140450806702248,0,0,0.309977343527296,3.56400857184616,1.48360157567134,0.910161361938026,0,0.336672227908132,0.125118519871964,0.554128230968366,1.31693286264251,1.22595118319608,1.20190447125277,0.113432183160021,0.717558542755448,1.06778694409284,0.635795703478686,1.20036438433761,0.412210116953756,0,0.744467425326359,0.337552664482532,0.292311015483596,0.252433774244115,0.828449087780694,0.161646056818812,1.06502877754984,0.503760491138201,0.67824236924195,0.966304265816484,2.45471508531751,0.860413786167011,0.853815942907168,0.265059536642971,0.348581828608555,1.24393266018445,0.756962552626885,0.36497735907583,0,1.92972281457866,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0.171567810298526,1.53650399572076,1.1240175325762,1.91005047582099,3.98130314181677,0,0,0,0,0.352226082707465,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C4504 | |||
|description=CAGE_peak_at_chr5:52775648..52775678,+ | |||
|id=chr5:52775648..52775678,+ | |||
|ontology_enrichment_celltype=CL:0000057!6.20e-17!75;CL:0000055!3.14e-14!180;CL:0000548!2.09e-11!679;CL:0000004!2.09e-11!679;CL:0000255!2.09e-11!679;CL:0000012!4.48e-11!682;CL:0002620!2.64e-10!23;CL:0002077!4.86e-09!33;CL:0002159!6.72e-09!13;CL:0000063!2.51e-08!578;CL:0002371!4.39e-08!591;CL:0000003!1.08e-07!722;CL:0000144!1.84e-07!625;CL:0002076!5.44e-07!43;CL:0000066!5.46e-07!254;CL:0002368!6.14e-07!13;CL:0000221!8.55e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0002159;1.70e-15;14!CL:0002368;3.57e-13;13!CL:0002328;3.37e-12;3!CL:0002076;3.20e-11;42!CL:0002202;1.78e-10;9!CL:0002632;1.78e-10;9!CL:0000362;5.83e-10;9!CL:0000240;7.91e-10;6!CL:0000311;7.91e-10;6!CL:0000079;7.91e-10;6!CL:0000237;7.91e-10;6!CL:0002077;9.77e-10;34!CL:0000244;3.16e-09;4!CL:0000731;3.16e-09;4!CL:0000317;8.30e-09;2!CL:1000448;8.30e-09;2!CL:0002308;8.30e-09;2!CL:0002140;8.30e-09;2!CL:0000575;1.41e-08;2!CL:0000312;7.95e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,9.60e-16,14;CL:0002076,3.35e-14,42;CL:0002368,2.58e-13,13;CL:0002328,3.33e-12,3;CL:0002077,6.61e-11,34;CL:0002202,1.92e-10,9;CL:0002632,1.92e-10,9;CL:0000362,4.83e-10,9;CL:0000240,5.92e-10,6;CL:0000311,5.92e-10,6;CL:0000079,5.92e-10,6;CL:0000237,5.92e-10,6;CL:0000036,5.92e-10,6;CL:0000357,5.92e-10,6;CL:0000114,5.92e-10,6;CL:0000223,2.11e-09,58;CL:0000244,3.50e-09,4;CL:0000731,3.50e-09,4;CL:0000066,6.96e-09,253;CL:0000317,8.18e-09,2;CL:1000448,8.18e-09,2;CL:0002308,8.18e-09,2;CL:0002140,8.18e-09,2;CL:0000575,1.24e-08,2;CL:0000312,6.55e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000357;7.91e-10;6!CL:0000114;7.91e-10;6 | |||
|ontology_enrichment_disease=DOID:1749!4.13e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!8.37e-18!95;UBERON:0002097!1.32e-12!40;UBERON:0002199!7.06e-11!45;UBERON:0002416!7.06e-11!45;UBERON:0000165!9.41e-08!28;UBERON:0000930!9.41e-08!28;UBERON:0000475!1.42e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;3.37e-12;3!UBERON:0002031;3.37e-12;3!UBERON:0003729;1.09e-09;13!UBERON:0000165;7.08e-09;28!UBERON:0002419;8.30e-09;2!UBERON:0007771;8.30e-09;2!UBERON:0003297;8.30e-09;2!UBERON:0001821;8.30e-09;2!UBERON:0003487;8.30e-09;2!UBERON:0001820;8.30e-09;2!UBERON:0001003;4.01e-08;15!UBERON:0007376;4.01e-08;15!UBERON:0002185;1.79e-07;5!UBERON:0000365;1.87e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,3.33e-12,3;UBERON:0002031,3.33e-12,3;UBERON:0003102,4.20e-12,99;UBERON:0003729,8.48e-10,13;UBERON:0002419,8.18e-09,2;UBERON:0007771,8.18e-09,2;UBERON:0003297,8.18e-09,2;UBERON:0001821,8.18e-09,2;UBERON:0003487,8.18e-09,2;UBERON:0001820,8.18e-09,2;UBERON:0005089,8.18e-09,2;UBERON:0005088,8.18e-09,2;UBERON:0000165,1.58e-08,29;UBERON:0000930,1.58e-08,29;UBERON:0001003,2.90e-08,15;UBERON:0007376,2.90e-08,15;UBERON:0007383,2.90e-08,15;UBERON:0002185,1.78e-07,5;UBERON:0000365,2.03e-07,5;UBERON:0000033,7.50e-07,56;UBERON:0001444,8.78e-07,49 | |||
|phase1_expression=0.363356758541113,0.856402095563933,0.422863212287913,2.00146596706261,0.446961094427288,0.872338524100369,0,0,0,0.245733936501509,0,0,0,0,0,0.672325146451775,0.602694528023977,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,5.51652734687356,3.31326510656075,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0.670700859703636,0.12786256184353,0.361439152384566,2.00535164254356,0.289693037921647,0,0,0,0,0.087834785693126,0,6.19301990097322,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,4.36094052142534,0,0.25326102332916,1.05927344650575,0.860509862246441,1.06400514659507,0.560677600142307,0,0,0.311211035399766,0,0,0,0,0,0.312160076830321,0,0.298897361103602,0.587172493218824,0.323745888736263,0.140450806702248,0,0,0.309977343527296,3.56400857184616,1.48360157567134,0.910161361938026,0,0.336672227908132,0.125118519871964,0.554128230968366,1.31693286264251,1.22595118319608,1.20190447125277,0.113432183160021,0.717558542755448,1.06778694409284,0.635795703478686,1.20036438433761,0.412210116953756,0,0.744467425326359,0.337552664482532,0.292311015483596,0.252433774244115,0.828449087780694,0.161646056818812,1.06502877754984,0.503760491138201,0.67824236924195,0.966304265816484,2.45471508531751,0.860413786167011,0.853815942907168,0.265059536642971,0.348581828608555,1.24393266018445,0.756962552626885,0.36497735907583,0,1.92972281457866,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0.171567810298526,1.53650399572076,1.1240175325762,1.91005047582099,3.98130314181677,0,0,0,0,0.352226082707465,0,0,0,0,0,0,0,0,0.93733833986777,0.671928512795438,1.98485136139341,0.358234090811393,2.3250715081117,4.21720947081732,0,0,0,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,1.04007436911366,0.257207374262142,0,0.266422179016099,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,1.42636905040718,0,0,0.179060963239896,0,0,0.431255149719035,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0.473107245101804,0.468565659970853,0.300946099727719,0,0,0.664225598535437,0.553107505625109,1.56390506042549,0,0,0,0,0,0,0,0,0.248107807818777,0.61384789315225,0.561320188866147,0.128139149255701,1.53512174720011,0.804269605718038,0,0,0.177561725313127,0.164254312027618,0,0.116210378459959,0,1.20303882181971,0.828728900423067,0,0.546273504020151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,2.29706215198469,3.90036147621913,0,0.096670718292122,0,0,0,0,0,0,0.0890320356467374,0.495854746082934,1.53752053892085,1.91419068741876,0.910420027699949,0,0.94443704049192,0.6970372701606,0.924100740528266,0,0.869932992075073,0,0,0,0,0,0,0,0.636406495851874,0,0.179872457583315,0,0,0.808729926293264,0,0,0,1.21856744815642,0,0.136499911407986,0.424216295861138,0,0,0,0.438450885253763,0.578775534266688,0,0,0,0,0,0.196498082026242,0,0,0.211107635297664,0,0.75894634753143,0.349934720244983,2.30933070541229,2.01090682660736,0,0,1.29151611801369,0,4.43430153536676,3.21612760289743,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0,0,0,0.556543525114529,0,0,0.19924798825107,0,0,0,0,0.311039587661807,0.808815160325942,0.179021174675609,0,0,0,0,0,0,0,0,0.0874599999961957,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0,0.227884111694002,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0.979923974143776,2.52471699083167,0,0,0,0.219267951258557,0.0821154570532092,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0.104602846312333,0,0,0,0.136905378891993,0,0.429765441419957,0,0,0,0,0,0,0,0.0671834724867263,1.80149941771202,0,0.709048640765013,0.247247575143499,0.404421263125109,0.0984274815147488,0,0,0,0.803765742325096,0.550157746388935,0,0,0,0,0.335434687599266,0,0,0.105600336519406,0.35857467866569,0.767660789277781,0,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0.276697269872462,0.74988244777264,0,0,0.705797459094515,0,0,0,0,1.10961172300523,0.189403005275089,0.50313580350515,0,0.686520205190771,0.453692771289717,0.15543720058278,0.147855149989634,0.477890301491107,0,0,0,0,0.521745061811734,0.150257608997218,0,0,0.363697318405119,0,0,0.796191777397232,0,0.686791410365586,0.336749488765919,0,0,0.214441591374926,0,0,0,0,0,0,0,0.530067437837643,0,0,0,0,0.303859956177382,0,0,0,0,0,0.245772908753719,0.211312123358627,0,0,0,0,0.552317850755522,2.37795163123056,2.48830904013189,0,0.107824811396682,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0.235939446695481,1.28400018965175,1.73288499225507,0,1.380719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| |||
|short_description=p@chr5:52775648..52775678,+ | |||
}} |
Revision as of 15:50, 13 September 2013
Short description: | p@chr5:52775648..52775678, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:52775648..52775678, + |
Coexpression cluster: | C4504_Fibroblast_Pancreatic_prostate_Gingival_Smooth_Tracheal_hepatic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 9.60e-16 | 14 |
endo-epithelial cell | 3.35e-14 | 42 |
respiratory epithelial cell | 2.58e-13 | 13 |
bronchial epithelial cell | 3.33e-12 | 3 |
ecto-epithelial cell | 6.61e-11 | 34 |
epithelial cell of tracheobronchial tree | 1.92e-10 | 9 |
epithelial cell of lower respiratory tract | 1.92e-10 | 9 |
epidermal cell | 4.83e-10 | 9 |
stratified squamous epithelial cell | 5.92e-10 | 6 |
keratin accumulating cell | 5.92e-10 | 6 |
stratified epithelial cell | 5.92e-10 | 6 |
keratinizing barrier epithelial cell | 5.92e-10 | 6 |
epithelial fate stem cell | 5.92e-10 | 6 |
stratified epithelial stem cell | 5.92e-10 | 6 |
surface ectodermal cell | 5.92e-10 | 6 |
endodermal cell | 2.11e-09 | 58 |
transitional epithelial cell | 3.50e-09 | 4 |
urothelial cell | 3.50e-09 | 4 |
epithelial cell | 6.96e-09 | 253 |
sebum secreting cell | 8.18e-09 | 2 |
epithelial cell of sweat gland | 8.18e-09 | 2 |
epithelial cell of skin gland | 8.18e-09 | 2 |
acinar cell of sebaceous gland | 8.18e-09 | 2 |
corneal epithelial cell | 1.24e-08 | 2 |
keratinocyte | 6.55e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 3.33e-12 | 3 |
epithelium of bronchus | 3.33e-12 | 3 |
surface structure | 4.20e-12 | 99 |
mouth mucosa | 8.48e-10 | 13 |
skin gland | 8.18e-09 | 2 |
epidermis gland | 8.18e-09 | 2 |
gland of integumental system | 8.18e-09 | 2 |
sebaceous gland | 8.18e-09 | 2 |
skin sebaceous gland | 8.18e-09 | 2 |
sweat gland | 8.18e-09 | 2 |
sweat gland placode | 8.18e-09 | 2 |
sebaceous gland placode | 8.18e-09 | 2 |
mouth | 1.58e-08 | 29 |
stomodeum | 1.58e-08 | 29 |
skin epidermis | 2.90e-08 | 15 |
outer epithelium | 2.90e-08 | 15 |
enveloping layer of ectoderm | 2.90e-08 | 15 |
bronchus | 1.78e-07 | 5 |
urothelium | 2.03e-07 | 5 |
head | 7.50e-07 | 56 |
subdivision of head | 8.78e-07 | 49 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.