FFCP PHASE1:Mm9::chr18:38456294..38456373,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=56736|HGNC=|MCL_coexpression_id=1|UniProt=E9QM86,Q9JI90|association_with_transcript=0bp_to_ENSMUST00000115589_5end|description=CAGE_peak_1_at_Rnf14_5end|id=chr18:38456294..38456373,+|ontology_enrichment_celltype=CL:0000540!7.42e-12!33;CL:0000047!7.42e-12!33;CL:0000031!7.42e-12!33;CL:0000404!7.42e-12!33;CL:0000117!9.63e-12!23;CL:0000337!9.63e-12!23;CL:0000393!1.79e-11!39;CL:0000211!1.79e-11!39;CL:0002319!8.97e-08!43;CL:0000221!9.88e-08!44;CL:0000133!9.88e-08!44;CL:0000055!1.60e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,7.42e-12,33;CL:0000047,7.42e-12,33;CL:0000031,7.42e-12,33;CL:0000404,7.42e-12,33;CL:0000117,9.63e-12,23;CL:0000337,9.63e-12,23;CL:0000393,1.79e-11,39;CL:0000211,1.79e-11,39;CL:0002319,8.97e-08,43;CL:0000221,9.88e-08,44;CL:0000133,9.88e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.13e-20!75;UBERON:0001016!2.13e-20!75;UBERON:0001017!2.06e-19!73;UBERON:0005743!2.06e-19!73;UBERON:0001049!2.20e-17!52;UBERON:0005068!2.20e-17!52;UBERON:0006241!2.20e-17!52;UBERON:0007135!2.20e-17!52;UBERON:0004121!2.70e-17!102;UBERON:0000924!2.70e-17!102;UBERON:0006601!2.70e-17!102;UBERON:0000025!9.74e-17!114;UBERON:0002020!1.27e-16!34;UBERON:0004111!1.53e-16!122;UBERON:0000955!2.67e-16!50;UBERON:0006238!2.67e-16!50;UBERON:0000033!6.44e-16!63;UBERON:0002346!8.69e-16!71;UBERON:0003075!8.69e-16!71;UBERON:0007284!8.69e-16!71;UBERON:0002616!9.16e-16!49;UBERON:0002791!8.70e-14!29;UBERON:0003528!8.70e-14!29;UBERON:0001893!8.70e-14!29;UBERON:0003080!1.03e-13!40;UBERON:0003056!1.64e-13!49;UBERON:0002780!4.28e-13!39;UBERON:0001890!4.28e-13!39;UBERON:0006240!4.28e-13!39;UBERON:0000956!1.43e-09!21;UBERON:0001869!1.43e-09!21;UBERON:0000203!1.43e-09!21;UBERON:0002619!1.81e-08!17;UBERON:0002021!5.32e-08!10;UBERON:0000411!5.32e-08!10;UBERON:0001950!5.32e-08!10;UBERON:0000477!2.50e-07!154|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.13e-20,75;UBERON:0010314,1.09e-19,92;UBERON:0001017,2.06e-19,73;UBERON:0004121,6.39e-19,95;UBERON:0000924,6.39e-19,95;UBERON:0006601,6.39e-19,95;UBERON:0000073,1.31e-18,54;UBERON:0002346,5.67e-18,64;UBERON:0003075,5.67e-18,64;UBERON:0007284,5.67e-18,64;UBERON:0001049,2.20e-17,52;UBERON:0005068,2.20e-17,52;UBERON:0006241,2.20e-17,52;UBERON:0007135,2.20e-17,52;UBERON:0000025,9.74e-17,114;UBERON:0002020,1.27e-16,34;UBERON:0004111,1.53e-16,122;UBERON:0010371,2.94e-15,73;UBERON:0000955,1.49e-14,47;UBERON:0006238,1.49e-14,47;UBERON:0002616,4.94e-14,46;UBERON:0003528,8.70e-14,29;UBERON:0002791,8.70e-14,29;UBERON:0001893,8.70e-14,29;UBERON:0003080,1.03e-13,40;UBERON:0003056,1.64e-13,49;UBERON:0002780,4.28e-13,39;UBERON:0001890,4.28e-13,39;UBERON:0006240,4.28e-13,39;UBERON:0000956,1.43e-09,21;UBERON:0001869,1.43e-09,21;UBERON:0000203,1.43e-09,21;UBERON:0002619,1.81e-08,17;UBERON:0002021,5.32e-08,10;UBERON:0000411,5.32e-08,10;UBERON:0001950,5.32e-08,10|phase1_expression=62.4580503708696,54.091188184101,56.4199056843025,45.9745601186382,34.0609096363516,38.2764739959109,44.6200143537454,32.9264474776019,13.093351160105,17.5548394741495,13.0125655851384,13.7208113471979,38.5201642345213,43.6227808070797,41.9718299887735,54.0608963930835,65.0592546659176,35.1740314374435,39.2147280112413,31.8292238848523,77.3893940374735,29.9858672626674,40.485967316535,59.6771737019407,69.0521936012182,51.6808767703518,57.2913454891569,54.0832794041581,66.1281499708181,47.381664394867,58.3151243023451,21.5910428976275,15.3766196896143,15.8481681015439,20.2196133825892,21.610503896604,21.2336130512864,76.5912884248541,42.973443948809,74.3403716442794,77.0583249320629,73.0858668905537,72.3410426016419,64.7109644394467,66.199136086343,50.6589035966241,34.4252191513137,39.4625533048608,45.9144121915046,57.3568202269136,66.0735910071711,50.3133975277401,26.0063039389491,30.4652099644765,33.2732861151039,70.4890854738495,75.6448281438318,79.4135022107261,135.147395854211,174.567023159771,167.965321929137,43.3721001048489,39.1289710288901,19.3478439215501,23.7327927016074,20.6039233334369,18.5752068521411,12.6792040756113,72.064280554392,79.9235154923609,80.9751101202821,223.093418819371,199.665161020259,105.34208732486,94.3119434819446,102.033285313712,252.1653674886,238.00919819079,244.54160094394,169.737652308759,175.381812785819,147.418483867563,212.737445239052,214.41255442207,219.265485559723,228.042525156619,220.67610523861,191.432230862584,114.422278126441,113.886341080926,42.6100798391466,48.1837371109576,32.638624017972,65.8437893798137,73.4247351715866,73.9244363710604,63.1999890592883,64.5930922570839,52.4767729297795,49.1142008569373,65.3513467763798,39.7812079984385,25.4805239706646,21.3320010945999,35.2880396848279,36.4838206284142,33.3646133709757,59.2614335741921,64.9934087954401,70.3615739167269,43.371331691534,47.8010800950062,51.196640390845,55.918099645023,65.9672647031304,59.9429640642552,125.327848641328,85.3136205827479,59.2689069806416,59.0449002308044,62.7189912427518,64.9732839201198,82.0123749359738,154.295480025085,165.46289838263,59.0105797531846,20.0091257924887,20.3966928537759,23.2538515543708,297.484209857978,266.722851443259,177.926562591816,354.253964551859,336.777257304045,265.345332902558,277.432559845866,58.6594735777822,59.5909389222346,68.9933130523932,76.1799518309036,41.1180599762144,52.8774840196988,61.2211241338187,63.446728308836,80.0109230019616,86.3486474719888,79.7401676003292,139.699820199068,31.0417909823293,35.7410491517178,43.4599276684954,41.8663848936668,47.2680323683516,43.1832686487487,47.329891373827,39.0107162964247,20.3641824320838,20.0731367549478,18.4706274607135,61.1021028979731,51.8302592558223,63.2017835728162,59.8964181030582,73.9833511370238,71.2714061539688,81.3868806626428,82.6282076310827,99.3673063544612,99.0650296479152,106.873019115491,104.821970742791,107.018390795343,98.3584516503907,96.4944150887073,324.267100685884,164.544475194476,83.9263708778847,63.4681359992506,43.2975148586525,39.4802342162745,39.5623106258827,52.0343493528224,54.927376829683,67.7203228960711,60.7397198776975,71.1499484407727,68.3631767936733,74.0118075993081,78.5705271090054,61.1197197884871,63.1123105634107,60.1406645228189,43.4339493182557,41.8149556151607,55.2267904798094,46.4325027487316,47.7123118432359,61.64938568359,70.5087388935469,81.9236321286792,86.6632977684389,94.7690218919428,82.7102829573145,44.8813334376293,47.5672768173951,37.7768348806554,48.8892892546292,49.9236720687503,60.8555785757593,56.1007468029081,56.2609236909373,57.6578967694971,53.1942364151212,74.4281895337007,66.776062046516,91.4335538168545,72.8353498898963,107.584905264031,85.9102334274712,39.0352308247199,47.0968781917455,43.9639772157737,42.7136251885074,60.4697589364955,74.7457032382083,84.4928695224269,88.7485861317855,83.0492586182906,77.1761080302238,74.5578081956608,76.6721319484576,86.9340842074885,72.3798162908507,71.251644580251,74.7481694988935,58.2226534702986,271.97269943932,260.209944234691,45.0821099785857,106.79520220745,71.304857588074,81.9921363022941,79.9220805588684,63.3267314574263,67.5079982469654,67.3722143277421,66.7937657763576,82.7084077889013,85.7774478143956,183.795792993274,63.8730383437209,36.8595799591218,59.4537401640553,62.1937363606459,50.4431525691859,33.5037277893874,28.7207379116513,28.8565772026524,33.6644157884081,47.0375776354209,52.9778000994853,46.5323173731207,43.492680162936,60.3630207657409,51.6551182017494,57.7559042189846,75.2371528715871,46.455762260078,43.20580038344,61.3003920190354,65.7932266812835,71.3475270408282,75.5280004563735,67.8956836525556,90.1139358964648,123.709929384471,68.3638033970382,47.8170133530292,58.7730513173096,50.7231698645791,46.0777247852107,45.3028883296369,59.7535715091194,225.106316640759,55.5330362593021,37.7687968372697,49.8173278624524,63.2918015535762,64.5196754843239,69.3197864815764,29.406268388937,26.7307273938187,31.5095940274086,56.3255664628917,52.1954389408873,44.7302827679067,42.2300882613243,45.3721602351397,51.5335650440979,57.4522115599336,61.7421314268259,63.0831820181511,75.0470695359481,59.6485740563449,34.9489621984198,39.7714012476984,37.3936188433041,39.4735912338417,41.331143512874,44.6044171295654,54.9231876862129,45.3111259256946,50.3324853243412,42.5188052653771,47.2369210262899,60.358124039982,40.1395926274525,31.3268419352723,32.8699682133821,39.5648997425134,42.716491277972,36.2990257550306,47.2606486958647,43.2136405778072,47.7816677726849,46.5816975332203,47.0721563973004,52.9165129021812,63.8147885911366,77.3150608127871,66.8177719655935,59.211145362254,67.3217311619955,65.6844619709448,67.1903262115231,50.7329999220324,48.2328852927898,61.1917966923143,349.581390579964,347.545553562919,352.903636278668,312.772791865511,337.060599727156,318.776224698454,319.285642609644,267.941115918411,280.948293570207,270.27088273445,40.8922149481656,56.6615320229464,60.7811636484718,55.9145449257076,71.058862130886,68.0220981265052,71.7856930799217,73.7605504915241,84.7226713322392,86.6751436349825,81.6203345646572,78.4685580166077,66.110904273737,69.6593658164978,69.7266593121145,61.4418861755165,68.2558679815199,67.3253179418331,69.2304313349555,69.9194870638387,64.8022887008435,61.0516773188121,66.7621331852499,72.3825154828996,70.582035311498,75.5608448472671,66.768710098562,76.2902163169744,67.6304486952392,58.9199385240625,69.9946606932627,65.3084718149986,58.5200391732656,67.5524627570812,61.344302292003,81.4382484077704,77.4313623954302,88.5268742678989,67.7160695523706,82.7217821698183,93.6746055906503|short_description=p1@Rnf14}} | ||
|EntrezGene=56736 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=E9QM86,Q9JI90 | |||
|association_with_transcript=0bp_to_ENSMUST00000115589_5end | |||
|description=CAGE_peak_1_at_Rnf14_5end | |||
|id=chr18:38456294..38456373,+ | |||
|ontology_enrichment_celltype=CL:0000540!7.42e-12!33;CL:0000047!7.42e-12!33;CL:0000031!7.42e-12!33;CL:0000404!7.42e-12!33;CL:0000117!9.63e-12!23;CL:0000337!9.63e-12!23;CL:0000393!1.79e-11!39;CL:0000211!1.79e-11!39;CL:0002319!8.97e-08!43;CL:0000221!9.88e-08!44;CL:0000133!9.88e-08!44;CL:0000055!1.60e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,7.42e-12,33;CL:0000047,7.42e-12,33;CL:0000031,7.42e-12,33;CL:0000404,7.42e-12,33;CL:0000117,9.63e-12,23;CL:0000337,9.63e-12,23;CL:0000393,1.79e-11,39;CL:0000211,1.79e-11,39;CL:0002319,8.97e-08,43;CL:0000221,9.88e-08,44;CL:0000133,9.88e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.13e-20!75;UBERON:0001016!2.13e-20!75;UBERON:0001017!2.06e-19!73;UBERON:0005743!2.06e-19!73;UBERON:0001049!2.20e-17!52;UBERON:0005068!2.20e-17!52;UBERON:0006241!2.20e-17!52;UBERON:0007135!2.20e-17!52;UBERON:0004121!2.70e-17!102;UBERON:0000924!2.70e-17!102;UBERON:0006601!2.70e-17!102;UBERON:0000025!9.74e-17!114;UBERON:0002020!1.27e-16!34;UBERON:0004111!1.53e-16!122;UBERON:0000955!2.67e-16!50;UBERON:0006238!2.67e-16!50;UBERON:0000033!6.44e-16!63;UBERON:0002346!8.69e-16!71;UBERON:0003075!8.69e-16!71;UBERON:0007284!8.69e-16!71;UBERON:0002616!9.16e-16!49;UBERON:0002791!8.70e-14!29;UBERON:0003528!8.70e-14!29;UBERON:0001893!8.70e-14!29;UBERON:0003080!1.03e-13!40;UBERON:0003056!1.64e-13!49;UBERON:0002780!4.28e-13!39;UBERON:0001890!4.28e-13!39;UBERON:0006240!4.28e-13!39;UBERON:0000956!1.43e-09!21;UBERON:0001869!1.43e-09!21;UBERON:0000203!1.43e-09!21;UBERON:0002619!1.81e-08!17;UBERON:0002021!5.32e-08!10;UBERON:0000411!5.32e-08!10;UBERON:0001950!5.32e-08!10;UBERON:0000477!2.50e-07!154 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.13e-20,75;UBERON:0010314,1.09e-19,92;UBERON:0001017,2.06e-19,73;UBERON:0004121,6.39e-19,95;UBERON:0000924,6.39e-19,95;UBERON:0006601,6.39e-19,95;UBERON:0000073,1.31e-18,54;UBERON:0002346,5.67e-18,64;UBERON:0003075,5.67e-18,64;UBERON:0007284,5.67e-18,64;UBERON:0001049,2.20e-17,52;UBERON:0005068,2.20e-17,52;UBERON:0006241,2.20e-17,52;UBERON:0007135,2.20e-17,52;UBERON:0000025,9.74e-17,114;UBERON:0002020,1.27e-16,34;UBERON:0004111,1.53e-16,122;UBERON:0010371,2.94e-15,73;UBERON:0000955,1.49e-14,47;UBERON:0006238,1.49e-14,47;UBERON:0002616,4.94e-14,46;UBERON:0003528,8.70e-14,29;UBERON:0002791,8.70e-14,29;UBERON:0001893,8.70e-14,29;UBERON:0003080,1.03e-13,40;UBERON:0003056,1.64e-13,49;UBERON:0002780,4.28e-13,39;UBERON:0001890,4.28e-13,39;UBERON:0006240,4.28e-13,39;UBERON:0000956,1.43e-09,21;UBERON:0001869,1.43e-09,21;UBERON:0000203,1.43e-09,21;UBERON:0002619,1.81e-08,17;UBERON:0002021,5.32e-08,10;UBERON:0000411,5.32e-08,10;UBERON:0001950,5.32e-08,10 | |||
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| |||
|short_description=p1@Rnf14 | |||
}} |
Revision as of 16:08, 13 September 2013
Short description: | p1@Rnf14 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rnf14_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000115589_5end |
EntrezGene: | Rnf14 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 7.42e-12 | 33 |
neuronal stem cell | 7.42e-12 | 33 |
neuroblast | 7.42e-12 | 33 |
electrically signaling cell | 7.42e-12 | 33 |
CNS neuron (sensu Vertebrata) | 9.63e-12 | 23 |
neuroblast (sensu Vertebrata) | 9.63e-12 | 23 |
electrically responsive cell | 1.79e-11 | 39 |
electrically active cell | 1.79e-11 | 39 |
neural cell | 8.97e-08 | 43 |
ectodermal cell | 9.88e-08 | 44 |
neurectodermal cell | 9.88e-08 | 44 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.