FFCP PHASE1:Mm9::chr2:28368625..28368646,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19730|HGNC=|MCL_coexpression_id=22|UniProt=B0R018|association_with_transcript=0bp_to_ENSMUST00000135803_5end|description=CAGE_peak_3_at_Ralgds_5end|id=chr2:28368625..28368646,+|ontology_enrichment_celltype=CL:0000221!5.02e-14!44;CL:0000133!5.02e-14!44;CL:0000540!6.46e-14!33;CL:0000047!6.46e-14!33;CL:0000031!6.46e-14!33;CL:0000404!6.46e-14!33;CL:0002319!9.66e-14!43;CL:0000055!1.19e-11!50;CL:0000393!2.17e-11!39;CL:0000211!2.17e-11!39;CL:0000117!4.71e-11!23;CL:0000337!4.71e-11!23|ontology_enrichment_celltype_v019_2=CL:0000540,7.81e-18,33;CL:0000047,7.81e-18,33;CL:0000031,7.81e-18,33;CL:0000404,7.81e-18,33;CL:0000221,1.47e-17,44;CL:0000133,1.47e-17,44;CL:0002319,3.45e-17,43;CL:0000117,1.92e-14,23;CL:0000337,1.92e-14,23;CL:0000393,4.33e-13,39;CL:0000211,4.33e-13,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.37e-19!75;UBERON:0001016!1.37e-19!75;UBERON:0004121!1.52e-19!102;UBERON:0000924!1.52e-19!102;UBERON:0006601!1.52e-19!102;UBERON:0001017!2.55e-19!73;UBERON:0005743!2.55e-19!73;UBERON:0002346!8.50e-17!71;UBERON:0003075!8.50e-17!71;UBERON:0007284!8.50e-17!71;UBERON:0001049!2.38e-14!52;UBERON:0005068!2.38e-14!52;UBERON:0006241!2.38e-14!52;UBERON:0007135!2.38e-14!52;UBERON:0000033!1.04e-13!63;UBERON:0003056!2.58e-13!49;UBERON:0002020!4.95e-12!34;UBERON:0003080!1.85e-11!40;UBERON:0000955!2.65e-11!50;UBERON:0006238!2.65e-11!50;UBERON:0002780!5.48e-11!39;UBERON:0001890!5.48e-11!39;UBERON:0006240!5.48e-11!39;UBERON:0002616!9.09e-11!49;UBERON:0002791!4.43e-09!29;UBERON:0003528!4.43e-09!29;UBERON:0001893!4.43e-09!29|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.66e-23,73;UBERON:0001016,2.09e-23,75;UBERON:0004121,1.70e-21,95;UBERON:0000924,1.70e-21,95;UBERON:0006601,1.70e-21,95;UBERON:0002346,1.27e-19,64;UBERON:0003075,1.27e-19,64;UBERON:0007284,1.27e-19,64;UBERON:0010371,1.36e-17,73;UBERON:0001049,1.78e-16,52;UBERON:0005068,1.78e-16,52;UBERON:0006241,1.78e-16,52;UBERON:0007135,1.78e-16,52;UBERON:0000073,5.56e-16,54;UBERON:0003056,2.53e-14,49;UBERON:0002020,1.07e-13,34;UBERON:0000955,2.50e-13,47;UBERON:0006238,2.50e-13,47;UBERON:0002616,1.22e-12,46;UBERON:0003080,1.57e-12,40;UBERON:0010314,4.02e-12,92;UBERON:0002780,6.05e-12,39;UBERON:0001890,6.05e-12,39;UBERON:0006240,6.05e-12,39;UBERON:0003528,5.33e-10,29;UBERON:0002791,5.33e-10,29;UBERON:0001893,5.33e-10,29|phase1_expression=2.7225304007815,0,0,0,0,0.33575854382378,0.467225281191051,0.129123323441576,0.281577444303333,0.468129052643987,0,0,0,0,0,0,0,0.157731082679119,0.137114433605739,0,0.595303031057488,0.297872853602656,0.261199789138935,0.159992422793407,0,0,0.430761996159075,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0.485510353031154,0.377690453926732,0.709638518536602,0.917733760808408,1.56478268869608,1.52617609466313,1.75748946187577,0.58328969722285,1.25987779462826,0,0,0,0,0,0.573066879877513,0.515672092277442,10.9250888864183,16.398720357433,8.87363964908651,1.35537812827653,1.77858959222228,0.449949858640699,0,0.7104801149461,1.49800055259202,1.15265491596466,3.83651565541367,4.86021377994086,2.52389953621658,7.14127461009509,6.62605622854841,4.04219637409348,2.97120960156533,6.43453150627015,0,1.27687338085188,1.22885226604995,9.36392642884376,9.60620257825301,11.4600941522487,1.67509799400829,1.12552522006336,1.5279824777681,3.83017161115768,3.98640706237488,4.10078780815661,0.681535739998656,1.96486056277642,0.289864488701678,0.860423876981386,0,0,0,0,0.702222100658759,0.170430322578058,0.259786004602869,0,1.69012103732017,0,0,0,0,0,0.505524445014783,0.22836775943812,0.517875767294343,0.29688427812965,1.56136794089522,1.82679286987285,0.230615497256059,0.753613202763113,1.17588707135705,0.628332956648377,0.247194967734374,0.289198713839823,0,0.323533699894818,0.441683036920787,0,0,0,0.41889341362691,0,0.718890747035522,0.599902730993408,0.381210681219194,2.54644086988199,1.37250180845588,7.03664371832041,0.869121600961382,1.53429274398198,1.45451631191692,2.10913641988085,2.34230536855727,0.746441823660558,0,0.420883711772948,1.95180664444056,0.689706313300419,3.78130472591233,2.10986744970001,3.40182495756639,2.8185018462667,3.74806898238915,0.258703370739016,1.07783996466421,1.89106080167819,2.46331573829528,1.31517439456545,1.94633074457919,1.0447564995665,1.85203922767149,1.79130840136644,0,0.772043721344145,0.284163499395593,0.621377317606506,0.469052119962192,0.36012412292203,0.473489471170421,1.37734962223183,0.925602677324269,0.232533944750408,1.07309360559848,0.934122738937356,0.329119699826961,0.656669856316381,0.810688095458557,0.292399974850665,0.219550115291051,0.402619256281115,0.630869845692382,7.51203670368776,0,0,0.639864751605702,1.16118335930219,1.28867461322093,1.00841762311671,0.22237804384487,0.190225626112559,0,0.658795818896044,0.502670417600539,0.795825888164603,0.779856348476481,0,0.216138049874694,0,1.13800740571849,1.14248512609729,0,0.407302655690628,0.581857461502877,1.68325967736765,0.632365371242573,0,0,0.246794327843601,0,0,0.3931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| ||
|EntrezGene=19730 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=B0R018 | |||
|association_with_transcript=0bp_to_ENSMUST00000135803_5end | |||
|description=CAGE_peak_3_at_Ralgds_5end | |||
|id=chr2:28368625..28368646,+ | |||
|ontology_enrichment_celltype=CL:0000221!5.02e-14!44;CL:0000133!5.02e-14!44;CL:0000540!6.46e-14!33;CL:0000047!6.46e-14!33;CL:0000031!6.46e-14!33;CL:0000404!6.46e-14!33;CL:0002319!9.66e-14!43;CL:0000055!1.19e-11!50;CL:0000393!2.17e-11!39;CL:0000211!2.17e-11!39;CL:0000117!4.71e-11!23;CL:0000337!4.71e-11!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,7.81e-18,33;CL:0000047,7.81e-18,33;CL:0000031,7.81e-18,33;CL:0000404,7.81e-18,33;CL:0000221,1.47e-17,44;CL:0000133,1.47e-17,44;CL:0002319,3.45e-17,43;CL:0000117,1.92e-14,23;CL:0000337,1.92e-14,23;CL:0000393,4.33e-13,39;CL:0000211,4.33e-13,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.37e-19!75;UBERON:0001016!1.37e-19!75;UBERON:0004121!1.52e-19!102;UBERON:0000924!1.52e-19!102;UBERON:0006601!1.52e-19!102;UBERON:0001017!2.55e-19!73;UBERON:0005743!2.55e-19!73;UBERON:0002346!8.50e-17!71;UBERON:0003075!8.50e-17!71;UBERON:0007284!8.50e-17!71;UBERON:0001049!2.38e-14!52;UBERON:0005068!2.38e-14!52;UBERON:0006241!2.38e-14!52;UBERON:0007135!2.38e-14!52;UBERON:0000033!1.04e-13!63;UBERON:0003056!2.58e-13!49;UBERON:0002020!4.95e-12!34;UBERON:0003080!1.85e-11!40;UBERON:0000955!2.65e-11!50;UBERON:0006238!2.65e-11!50;UBERON:0002780!5.48e-11!39;UBERON:0001890!5.48e-11!39;UBERON:0006240!5.48e-11!39;UBERON:0002616!9.09e-11!49;UBERON:0002791!4.43e-09!29;UBERON:0003528!4.43e-09!29;UBERON:0001893!4.43e-09!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.66e-23,73;UBERON:0001016,2.09e-23,75;UBERON:0004121,1.70e-21,95;UBERON:0000924,1.70e-21,95;UBERON:0006601,1.70e-21,95;UBERON:0002346,1.27e-19,64;UBERON:0003075,1.27e-19,64;UBERON:0007284,1.27e-19,64;UBERON:0010371,1.36e-17,73;UBERON:0001049,1.78e-16,52;UBERON:0005068,1.78e-16,52;UBERON:0006241,1.78e-16,52;UBERON:0007135,1.78e-16,52;UBERON:0000073,5.56e-16,54;UBERON:0003056,2.53e-14,49;UBERON:0002020,1.07e-13,34;UBERON:0000955,2.50e-13,47;UBERON:0006238,2.50e-13,47;UBERON:0002616,1.22e-12,46;UBERON:0003080,1.57e-12,40;UBERON:0010314,4.02e-12,92;UBERON:0002780,6.05e-12,39;UBERON:0001890,6.05e-12,39;UBERON:0006240,6.05e-12,39;UBERON:0003528,5.33e-10,29;UBERON:0002791,5.33e-10,29;UBERON:0001893,5.33e-10,29 | |||
|phase1_expression=2.7225304007815,0,0,0,0,0.33575854382378,0.467225281191051,0.129123323441576,0.281577444303333,0.468129052643987,0,0,0,0,0,0,0,0.157731082679119,0.137114433605739,0,0.595303031057488,0.297872853602656,0.261199789138935,0.159992422793407,0,0,0.430761996159075,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0.485510353031154,0.377690453926732,0.709638518536602,0.917733760808408,1.56478268869608,1.52617609466313,1.75748946187577,0.58328969722285,1.25987779462826,0,0,0,0,0,0.573066879877513,0.515672092277442,10.9250888864183,16.398720357433,8.87363964908651,1.35537812827653,1.77858959222228,0.449949858640699,0,0.7104801149461,1.49800055259202,1.15265491596466,3.83651565541367,4.86021377994086,2.52389953621658,7.14127461009509,6.62605622854841,4.04219637409348,2.97120960156533,6.43453150627015,0,1.27687338085188,1.22885226604995,9.36392642884376,9.60620257825301,11.4600941522487,1.67509799400829,1.12552522006336,1.5279824777681,3.83017161115768,3.98640706237488,4.10078780815661,0.681535739998656,1.96486056277642,0.289864488701678,0.860423876981386,0,0,0,0,0.702222100658759,0.170430322578058,0.259786004602869,0,1.69012103732017,0,0,0,0,0,0.505524445014783,0.22836775943812,0.517875767294343,0.29688427812965,1.56136794089522,1.82679286987285,0.230615497256059,0.753613202763113,1.17588707135705,0.628332956648377,0.247194967734374,0.289198713839823,0,0.323533699894818,0.441683036920787,0,0,0,0.41889341362691,0,0.718890747035522,0.599902730993408,0.381210681219194,2.54644086988199,1.37250180845588,7.03664371832041,0.869121600961382,1.53429274398198,1.45451631191692,2.10913641988085,2.34230536855727,0.746441823660558,0,0.420883711772948,1.95180664444056,0.689706313300419,3.78130472591233,2.10986744970001,3.40182495756639,2.8185018462667,3.74806898238915,0.258703370739016,1.07783996466421,1.89106080167819,2.46331573829528,1.31517439456545,1.94633074457919,1.0447564995665,1.85203922767149,1.79130840136644,0,0.772043721344145,0.284163499395593,0.621377317606506,0.469052119962192,0.36012412292203,0.473489471170421,1.37734962223183,0.925602677324269,0.232533944750408,1.07309360559848,0.934122738937356,0.329119699826961,0.656669856316381,0.810688095458557,0.292399974850665,0.219550115291051,0.402619256281115,0.630869845692382,7.51203670368776,0,0,0.639864751605702,1.16118335930219,1.28867461322093,1.00841762311671,0.22237804384487,0.190225626112559,0,0.658795818896044,0.502670417600539,0.795825888164603,0.779856348476481,0,0.216138049874694,0,1.13800740571849,1.14248512609729,0,0.407302655690628,0.581857461502877,1.68325967736765,0.632365371242573,0,0,0.246794327843601,0,0,0.393117990226406,0,0,0,0,0,0.162135226775035,0,0,0,0.312037673114561,0,0,0,0.184753190166605,0.37898282354097,0.814824882210129,0.848725428875941,1.17345124144251,1.00503754465089,0.952174563544055,0.780534591431195,0.788175720530955,0.664394068946325,1.2756381492599,1.47476983244164,0.518054945597687,0.578596234326046,0,0.54390568381871,0,0.275936746304732,1.28440471990234,2.22702204525186,0,0.252470927204373,1.26203287766503,2.34263246577983,1.72338718186239,0.477937595905104,2.67358408898873,3.67999490025482,2.42886421004937,1.75353514746787,1.58115111178609,3.85585579706168,0.99358059645788,2.13678724400706,2.44330439030364,0.989820737835213,0,0.971122544619926,0.302323556964751,0.565815239267694,0.885905678642318,1.53717573971964,1.55056975900933,0.727067458955011,0.356497378384721,0,0,0,0.340439605753788,2.16073312837572,2.19909762430683,1.50035924522115,0.709360934569094,2.31879462882692,1.81003922662333,1.522324745573,0.469343416127421,0.847328283455281,0,0.49465875882444,1.61464426695906,0.482503399425247,0.596861720015682,0.656563598980245,0.874442509889552,1.29797711407357,0.170870880797853,1.23832120777933,1.29636169158798,0,0.136694227721025,0.228778173206523,0.339956859987711,0.559805809294632,0.829199842826543,0,2.37251995185852,0.813277868507395,0.86404272657441,0.209088296014469,0.655087691238533,0.674321731924103,0.743881101528023,0.26175594198403,0.259229946583586,0.621339313086926,2.81846469342095,1.79419855252775,0.330916980914195,1.36115831840833,2.71235629303235,0.506868376472335,1.40828686374905,1.95306577265925,1.36317147753424,0.966336483304024,1.15212002503146,0,1.41907650703115,0.102710957164827,0.25984164595559,0.358053391334963,0,0.120195449519969,0.147689527174577,0.100966449948148,0,0.100826185136841,0.0974578807397524,0.192423683280659,0,0.680191150845634,0,0.179427713218951,0,0.386379188064381,0.187682475451182,1.09890974560359,0.643105137237198,0.501572104035363,1.12950368523413,3.22227665555024,1.71868654031819,2.749650917499,0.685082519770642,0,2.02506750069542,2.2516060161211,2.26571204492102,1.03552062350364,0.93408612825759,5.58634822761443,3.58540572083682,0.972426868273176,1.88651846365184,2.02227859295016,2.22246727801615,2.06035057238894,1.92551525755089,2.02157769411038,3.04175159868288,1.69763707247469,1.12369808963859,1.85672941974121,0.746661096422973,1.42888107384922,1.73826488917283,1.3503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| |||
|short_description=p3@Ralgds | |||
}} |
Revision as of 23:36, 13 September 2013
Short description: | p3@Ralgds |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ralgds_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000135803_5end |
EntrezGene: | Ralgds |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 7.81e-18 | 33 |
neuronal stem cell | 7.81e-18 | 33 |
neuroblast | 7.81e-18 | 33 |
electrically signaling cell | 7.81e-18 | 33 |
ectodermal cell | 1.47e-17 | 44 |
neurectodermal cell | 1.47e-17 | 44 |
neural cell | 3.45e-17 | 43 |
CNS neuron (sensu Vertebrata) | 1.92e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.92e-14 | 23 |
electrically responsive cell | 4.33e-13 | 39 |
electrically active cell | 4.33e-13 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.66e-23 | 73 |
nervous system | 2.09e-23 | 75 |
ectoderm-derived structure | 1.70e-21 | 95 |
ectoderm | 1.70e-21 | 95 |
presumptive ectoderm | 1.70e-21 | 95 |
neurectoderm | 1.27e-19 | 64 |
neural plate | 1.27e-19 | 64 |
presumptive neural plate | 1.27e-19 | 64 |
ecto-epithelium | 1.36e-17 | 73 |
neural tube | 1.78e-16 | 52 |
neural rod | 1.78e-16 | 52 |
future spinal cord | 1.78e-16 | 52 |
neural keel | 1.78e-16 | 52 |
regional part of nervous system | 5.56e-16 | 54 |
pre-chordal neural plate | 2.53e-14 | 49 |
gray matter | 1.07e-13 | 34 |
brain | 2.50e-13 | 47 |
future brain | 2.50e-13 | 47 |
regional part of brain | 1.22e-12 | 46 |
anterior neural tube | 1.57e-12 | 40 |
structure with developmental contribution from neural crest | 4.02e-12 | 92 |
regional part of forebrain | 6.05e-12 | 39 |
forebrain | 6.05e-12 | 39 |
future forebrain | 6.05e-12 | 39 |
brain grey matter | 5.33e-10 | 29 |
regional part of telencephalon | 5.33e-10 | 29 |
telencephalon | 5.33e-10 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.