FFCP PHASE1:Mm9::chr2:32115577..32115634,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22245|HGNC=|UniProt=P52623,A2AN37,Q3V218|association_with_transcript=0bp_to_ENSMUST00000113405,ENSMUST00000134351,NM_011675,uc008jes.2_5end|description=CAGE_peak_1_at_Uck1_5end|id=chr2:32115577..32115634,-|ontology_enrichment_celltype=CL:0000548!6.05e-22!115;CL:0000004!6.05e-22!115;CL:0000255!6.05e-22!115;CL:0000144!6.83e-21!121;CL:0000012!6.83e-21!121;CL:0002371!6.17e-20!118;CL:0000723!5.28e-17!91;CL:0000048!5.28e-17!91;CL:0000034!1.70e-16!97;CL:0002319!2.07e-16!43;CL:0002321!3.30e-16!70;CL:0000220!3.30e-16!70;CL:0000221!5.91e-16!44;CL:0000133!5.91e-16!44;CL:0000055!3.23e-14!50;CL:0000540!2.98e-12!33;CL:0000047!2.98e-12!33;CL:0000031!2.98e-12!33;CL:0000404!2.98e-12!33;CL:0000219!2.97e-11!54;CL:0000117!4.88e-11!23;CL:0000337!4.88e-11!23;CL:0000393!7.96e-10!39;CL:0000211!7.96e-10!39;CL:0000063!2.37e-09!66;CL:0002320!1.22e-08!46;CL:0000134!1.22e-08!46|ontology_enrichment_celltype_v019_2=CL:0000723,5.28e-17,91;CL:0000048,5.28e-17,91;CL:0000034,1.70e-16,97;CL:0002319,2.07e-16,43;CL:0002321,3.30e-16,70;CL:0000221,5.91e-16,44;CL:0000133,5.91e-16,44;CL:0000540,2.98e-12,33;CL:0000047,2.98e-12,33;CL:0000031,2.98e-12,33;CL:0000404,2.98e-12,33;CL:0000219,2.97e-11,54;CL:0000117,4.88e-11,23;CL:0000337,4.88e-11,23;CL:0000393,7.96e-10,39;CL:0000211,7.96e-10,39;CL:0002320,1.22e-08,46;CL:0000134,1.22e-08,46|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.57e-14!73;UBERON:0005743!2.57e-14!73;UBERON:0000073!7.71e-14!75;UBERON:0001016!7.71e-14!75;UBERON:0004121!3.44e-09!102;UBERON:0000924!3.44e-09!102;UBERON:0006601!3.44e-09!102;UBERON:0002384!1.22e-08!46;UBERON:0002020!2.10e-08!34;UBERON:0001049!4.40e-08!52;UBERON:0005068!4.40e-08!52;UBERON:0006241!4.40e-08!52;UBERON:0007135!4.40e-08!52;UBERON:0002346!6.23e-08!71;UBERON:0003075!6.23e-08!71;UBERON:0007284!6.23e-08!71;UBERON:0000955!3.11e-07!50;UBERON:0006238!3.11e-07!50;UBERON:0002616!4.06e-07!49;UBERON:0002780!9.05e-07!39;UBERON:0001890!9.05e-07!39;UBERON:0006240!9.05e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.57e-14,73;UBERON:0001016,7.71e-14,75;UBERON:0000073,3.44e-09,54;UBERON:0002384,1.22e-08,46;UBERON:0002020,2.10e-08,34;UBERON:0001049,4.40e-08,52;UBERON:0005068,4.40e-08,52;UBERON:0006241,4.40e-08,52;UBERON:0007135,4.40e-08,52;UBERON:0004121,1.73e-07,95;UBERON:0000924,1.73e-07,95;UBERON:0006601,1.73e-07,95;UBERON:0002780,9.05e-07,39;UBERON:0001890,9.05e-07,39;UBERON:0006240,9.05e-07,39|phase1_expression=14.733693933641,30.0118850569851,27.2999543633722,42.647453794263,34.0609096363516,15.4448930158939,15.1848216387092,28.6653778040299,14.9236045480767,15.9163877898956,25.1690413291492,20.9003056567781,23.6257007305064,27.2751655547272,19.3203661853084,13.1608923803387,19.5877325875881,20.8205029136437,20.1558217400436,22.4926515452956,18.5394372529332,12.113496046508,16.194386926614,16.6392119705143,16.2880589557691,22.9692785646008,15.0766698655676,17.8841123129288,19.5724122040065,26.2111334950328,9.5344119581781,20.3209815507082,19.0670084151217,0,17.0422455653252,18.9507495708681,20.2127662699745,11.7188856606334,7.0320181007142,10.470474879476,7.05877785637217,7.5135003345429,10.6812277666854,12.7155786155333,11.3542162965856,12.2976323948327,39.119567217402,46.2213331526547,37.1269648821257,52.8849325482051,29.9570942278276,35.9381410912429,20.1339127269284,34.0920206745332,27.559691529682,16.9791227783725,15.4728057566929,17.0171790451556,26.3011399117477,31.2104677770499,31.0577387718028,23.3802727127701,22.2323699027785,31.496490104849,39.554654502679,56.1279290807419,42.2436155830951,72.2330414004523,21.9821978093973,22.5459917013923,27.1319200143283,36.8489769880907,38.6519946665324,22.0483438586917,29.3287141315803,39.5264078242309,22.0231761998777,21.3237854602263,21.9657342556428,26.7729164092293,28.2696818731446,24.4829284161677,28.1974828991395,27.0126052815206,23.3781319098519,25.9273155216828,30.1827963294098,24.6047268489397,16.9626673066332,12.3937358575128,16.5222758559956,24.9522924324602,41.4782513561728,45.3350680975766,34.4381501247265,26.4335863387428,24.4373291029248,10.2258193546835,15.846946280775,15.546941278455,14.3660288172214,11.5493829672886,12.7402619853323,14.2213340630666,16.8863011988747,21.2822286999083,15.6712577954583,24.2069825004407,9.32176381129818,29.2431013957705,18.3894446372104,18.5723941770406,24.2146272118861,24.1156224884196,17.52071736322,43.8576403740567,14.0901131608593,65.7927073985598,6.19227386364912,9.54424414689714,9.93786833071771,13.091631834651,13.0474232852686,12.8823550685081,15.9179497178226,14.0501380364725,23.3639492786545,21.5964983157627,22.8726408731516,13.9305294646485,17.8425235099264,26.6387226479273,13.3844726548053,12.7857728665165,12.259494629014,17.1975738851823,12.1188842981876,14.3068016201607,21.2287117084287,15.3622554797126,12.751803410345,16.7828536236435,12.7844112161798,12.6592046982001,11.4981683565744,10.1209839025031,12.4623293664439,13.9699820199068,11.2095356325078,10.2117283290622,11.08492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| ||
|EntrezGene=22245 | |||
|HGNC= | |||
|UniProt=P52623,A2AN37,Q3V218 | |||
|association_with_transcript=0bp_to_ENSMUST00000113405,ENSMUST00000134351,NM_011675,uc008jes.2_5end | |||
|description=CAGE_peak_1_at_Uck1_5end | |||
|id=chr2:32115577..32115634,- | |||
|ontology_enrichment_celltype=CL:0000548!6.05e-22!115;CL:0000004!6.05e-22!115;CL:0000255!6.05e-22!115;CL:0000144!6.83e-21!121;CL:0000012!6.83e-21!121;CL:0002371!6.17e-20!118;CL:0000723!5.28e-17!91;CL:0000048!5.28e-17!91;CL:0000034!1.70e-16!97;CL:0002319!2.07e-16!43;CL:0002321!3.30e-16!70;CL:0000220!3.30e-16!70;CL:0000221!5.91e-16!44;CL:0000133!5.91e-16!44;CL:0000055!3.23e-14!50;CL:0000540!2.98e-12!33;CL:0000047!2.98e-12!33;CL:0000031!2.98e-12!33;CL:0000404!2.98e-12!33;CL:0000219!2.97e-11!54;CL:0000117!4.88e-11!23;CL:0000337!4.88e-11!23;CL:0000393!7.96e-10!39;CL:0000211!7.96e-10!39;CL:0000063!2.37e-09!66;CL:0002320!1.22e-08!46;CL:0000134!1.22e-08!46 | |||
|ontology_enrichment_celltype_v019_2=CL:0000723,5.28e-17,91;CL:0000048,5.28e-17,91;CL:0000034,1.70e-16,97;CL:0002319,2.07e-16,43;CL:0002321,3.30e-16,70;CL:0000221,5.91e-16,44;CL:0000133,5.91e-16,44;CL:0000540,2.98e-12,33;CL:0000047,2.98e-12,33;CL:0000031,2.98e-12,33;CL:0000404,2.98e-12,33;CL:0000219,2.97e-11,54;CL:0000117,4.88e-11,23;CL:0000337,4.88e-11,23;CL:0000393,7.96e-10,39;CL:0000211,7.96e-10,39;CL:0002320,1.22e-08,46;CL:0000134,1.22e-08,46 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.57e-14!73;UBERON:0005743!2.57e-14!73;UBERON:0000073!7.71e-14!75;UBERON:0001016!7.71e-14!75;UBERON:0004121!3.44e-09!102;UBERON:0000924!3.44e-09!102;UBERON:0006601!3.44e-09!102;UBERON:0002384!1.22e-08!46;UBERON:0002020!2.10e-08!34;UBERON:0001049!4.40e-08!52;UBERON:0005068!4.40e-08!52;UBERON:0006241!4.40e-08!52;UBERON:0007135!4.40e-08!52;UBERON:0002346!6.23e-08!71;UBERON:0003075!6.23e-08!71;UBERON:0007284!6.23e-08!71;UBERON:0000955!3.11e-07!50;UBERON:0006238!3.11e-07!50;UBERON:0002616!4.06e-07!49;UBERON:0002780!9.05e-07!39;UBERON:0001890!9.05e-07!39;UBERON:0006240!9.05e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.57e-14,73;UBERON:0001016,7.71e-14,75;UBERON:0000073,3.44e-09,54;UBERON:0002384,1.22e-08,46;UBERON:0002020,2.10e-08,34;UBERON:0001049,4.40e-08,52;UBERON:0005068,4.40e-08,52;UBERON:0006241,4.40e-08,52;UBERON:0007135,4.40e-08,52;UBERON:0004121,1.73e-07,95;UBERON:0000924,1.73e-07,95;UBERON:0006601,1.73e-07,95;UBERON:0002780,9.05e-07,39;UBERON:0001890,9.05e-07,39;UBERON:0006240,9.05e-07,39 | |||
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| |||
|short_description=p1@Uck1 | |||
}} |
Revision as of 23:46, 13 September 2013
Short description: | p1@Uck1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Uck1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000113405, ENSMUST00000134351, NM_011675, uc008jes.2_5end |
EntrezGene: | Uck1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
somatic stem cell | 5.28e-17 | 91 |
multi fate stem cell | 5.28e-17 | 91 |
stem cell | 1.70e-16 | 97 |
neural cell | 2.07e-16 | 43 |
embryonic cell | 3.30e-16 | 70 |
ectodermal cell | 5.91e-16 | 44 |
neurectodermal cell | 5.91e-16 | 44 |
neuron | 2.98e-12 | 33 |
neuronal stem cell | 2.98e-12 | 33 |
neuroblast | 2.98e-12 | 33 |
electrically signaling cell | 2.98e-12 | 33 |
motile cell | 2.97e-11 | 54 |
CNS neuron (sensu Vertebrata) | 4.88e-11 | 23 |
neuroblast (sensu Vertebrata) | 4.88e-11 | 23 |
electrically responsive cell | 7.96e-10 | 39 |
electrically active cell | 7.96e-10 | 39 |
connective tissue cell | 1.22e-08 | 46 |
mesenchymal cell | 1.22e-08 | 46 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.57e-14 | 73 |
nervous system | 7.71e-14 | 75 |
regional part of nervous system | 3.44e-09 | 54 |
connective tissue | 1.22e-08 | 46 |
gray matter | 2.10e-08 | 34 |
neural tube | 4.40e-08 | 52 |
neural rod | 4.40e-08 | 52 |
future spinal cord | 4.40e-08 | 52 |
neural keel | 4.40e-08 | 52 |
ectoderm-derived structure | 1.73e-07 | 95 |
ectoderm | 1.73e-07 | 95 |
presumptive ectoderm | 1.73e-07 | 95 |
regional part of forebrain | 9.05e-07 | 39 |
forebrain | 9.05e-07 | 39 |
future forebrain | 9.05e-07 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.