FFCP PHASE1:Mm9::chr3:146444315..146444395,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18749|HGNC=|MCL_coexpression_id=123|UniProt=P68181|association_with_transcript=0bp_to_ENSMUST00000005164,NM_001164200,uc008rru.1_5end|description=CAGE_peak_1_at_Prkacb_5end|id=chr3:146444315..146444395,-|ontology_enrichment_celltype=CL:0000988!7.05e-10!32;CL:0002032!7.05e-10!32;CL:0000037!7.05e-10!32;CL:0000566!7.05e-10!32;CL:0000837!7.05e-10!32;CL:0002320!9.86e-08!46;CL:0000134!9.86e-08!46;CL:0002031!1.17e-07!25;CL:0000738!2.15e-07!17;CL:0002087!2.15e-07!17;CL:0000838!2.23e-07!12;CL:0000084!7.94e-07!11;CL:0000827!7.94e-07!11|ontology_enrichment_celltype_v019_2=CL:0000988,1.09e-10,32;CL:0002032,1.09e-10,32;CL:0000037,1.09e-10,32;CL:0000837,1.09e-10,32;CL:0002031,1.97e-08,25;CL:0002320,2.66e-08,46;CL:0000134,2.66e-08,46;CL:0000838,1.44e-07,12;CL:0000738,1.58e-07,17;CL:0002087,1.58e-07,17;CL:0000084,5.34e-07,11;CL:0000827,5.34e-07,11|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!6.08e-20!48;UBERON:0002390!1.57e-18!45;UBERON:0003061!1.57e-18!45;UBERON:0002405!1.15e-14!70;UBERON:0003081!1.33e-13!88;UBERON:0004177!3.31e-11!29;UBERON:0003408!1.85e-09!24;UBERON:0006562!3.59e-09!24;UBERON:0001557!3.59e-09!24;UBERON:0001042!3.59e-09!24;UBERON:0008814!3.59e-09!24;UBERON:0009145!3.59e-09!24;UBERON:0002370!4.77e-09!23;UBERON:0000974!4.77e-09!23;UBERON:0004807!4.77e-09!23;UBERON:0005058!4.77e-09!23;UBERON:0003351!4.77e-09!23;UBERON:0009113!4.77e-09!23;UBERON:0003295!4.77e-09!23;UBERON:0009722!4.77e-09!23;UBERON:0005562!4.77e-09!23;UBERON:0007690!4.77e-09!23;UBERON:0000926!1.74e-08!193;UBERON:0004120!1.74e-08!193;UBERON:0006603!1.74e-08!193;UBERON:0002371!3.61e-08!16;UBERON:0002384!9.86e-08!46;UBERON:0005057!4.06e-07!51;UBERON:0002204!4.94e-07!32;UBERON:0001474!6.82e-07!22;UBERON:0004765!6.82e-07!22;UBERON:0001434!6.82e-07!22;UBERON:0000072!7.82e-07!27|ontology_enrichment_uberon_v019_2=UBERON:0002193,8.78e-21,48;UBERON:0002405,8.78e-21,48;UBERON:0002390,2.54e-19,45;UBERON:0003061,2.54e-19,45;UBERON:0003081,7.06e-13,87;UBERON:0004177,9.69e-12,29;UBERON:0005057,9.69e-12,29;UBERON:0000077,2.62e-11,35;UBERON:0003408,6.18e-10,24;UBERON:0006562,1.24e-09,24;UBERON:0001557,1.24e-09,24;UBERON:0001042,1.24e-09,24;UBERON:0008814,1.24e-09,24;UBERON:0009145,1.24e-09,24;UBERON:0002370,1.65e-09,23;UBERON:0000974,1.65e-09,23;UBERON:0004807,1.65e-09,23;UBERON:0005058,1.65e-09,23;UBERON:0003351,1.65e-09,23;UBERON:0009113,1.65e-09,23;UBERON:0003295,1.65e-09,23;UBERON:0009722,1.65e-09,23;UBERON:0005562,1.65e-09,23;UBERON:0007690,1.65e-09,23;UBERON:0002371,2.20e-08,16;UBERON:0002384,2.66e-08,46;UBERON:0000926,8.06e-08,120;UBERON:0004120,8.06e-08,120;UBERON:0006603,8.06e-08,120;UBERON:0000072,2.27e-07,27;UBERON:0002204,2.61e-07,32;UBERON:0001474,5.38e-07,22;UBERON:0004765,5.38e-07,22;UBERON:0001434,5.38e-07,22;UBERON:0001004,5.97e-07,42|phase1_expression=0.960893082628764,0,0,0,0,0.16787927191189,0.233612640595526,92.0649296138439,8.58811205125167,7.0219357896598,9.75942418885378,8.69516533049167,117.614901462738,124.66149384949,18.3210368998615,10.5287139042709,6.29605690315332,66.0893236425508,64.7180126619087,42.014575528005,4.42225108785563,33.6596324571001,26.9035782813103,9.91953021319121,8.48814339948529,0,0,0.430942465371778,3.99049180858385,4.28451220591882,2.88249663851896,0,0,0,0,0,0,13.393012183581,13.2827008569046,18.8468547830567,17.6469446409304,17.7591826089196,18.934903768215,1.51076181570693,1.01376931219515,0,0.782391344348039,0.218025156380447,3.07560655828261,0.972149495371417,6.57936181639204,0,39.428912423568,73.9869384851571,114.944079306723,12.6057123657614,8.02293631828519,6.18806510732931,0,0,0.633831403506179,2.03306719241479,7.11435836888911,29.6966906702862,34.6103226898441,27.7087244828979,8.98800331555214,2.30530983192933,0,0.135005938331691,0.420649922702764,0.571301968807607,2.20868540951614,0,0.0958454710182364,0,0,0.383062014255563,0.614426133024974,0.131886287730194,0.0914876436024097,0,0,1.12552522006336,1.06958773443767,0,0.284743361598206,0.559198337475902,6.20954785332109,3.17400552448499,4.05810284182349,3.44169550792555,0,0,1.29955283489534,0.896053774194671,6.03911006566533,1.1930122580464,0.779358013808606,1.41335829804136,0,2.56652954828636,2.54805239706646,0,0,0.253359865475099,1.01104889002957,7.9928715803342,70.948980119325,5.04703272820404,0.173485326766136,0.608930956624282,0.922461989024234,0.904335843315735,1.88141931417128,0.502666365318702,0.988779870937496,5.78397427679647,13.2691582792481,3.72063754879041,6.40440403535141,3.87900202508178,11.1835056730873,0.585561594023094,0.628340120440365,6.38642638021478,55.2347723972292,27.5955256256968,49.6844587855683,1.04853447583376,0.457500602818626,0.251308704225729,1.21677024134594,0.511430914660661,2.28566849015516,0.811206315338788,3.36069900706044,13.43595282589,25.7777213602348,8.41767423545896,0.390361328888111,0.459804208866946,0.360124259610698,0.60281927134286,0.340182495756639,1.40925092313335,0.749613796477831,1.55222022443409,0,0.567318240503458,1.055706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| ||
|EntrezGene=18749 | |||
|HGNC= | |||
|MCL_coexpression_id=123 | |||
|UniProt=P68181 | |||
|association_with_transcript=0bp_to_ENSMUST00000005164,NM_001164200,uc008rru.1_5end | |||
|description=CAGE_peak_1_at_Prkacb_5end | |||
|id=chr3:146444315..146444395,- | |||
|ontology_enrichment_celltype=CL:0000988!7.05e-10!32;CL:0002032!7.05e-10!32;CL:0000037!7.05e-10!32;CL:0000566!7.05e-10!32;CL:0000837!7.05e-10!32;CL:0002320!9.86e-08!46;CL:0000134!9.86e-08!46;CL:0002031!1.17e-07!25;CL:0000738!2.15e-07!17;CL:0002087!2.15e-07!17;CL:0000838!2.23e-07!12;CL:0000084!7.94e-07!11;CL:0000827!7.94e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.09e-10,32;CL:0002032,1.09e-10,32;CL:0000037,1.09e-10,32;CL:0000837,1.09e-10,32;CL:0002031,1.97e-08,25;CL:0002320,2.66e-08,46;CL:0000134,2.66e-08,46;CL:0000838,1.44e-07,12;CL:0000738,1.58e-07,17;CL:0002087,1.58e-07,17;CL:0000084,5.34e-07,11;CL:0000827,5.34e-07,11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!6.08e-20!48;UBERON:0002390!1.57e-18!45;UBERON:0003061!1.57e-18!45;UBERON:0002405!1.15e-14!70;UBERON:0003081!1.33e-13!88;UBERON:0004177!3.31e-11!29;UBERON:0003408!1.85e-09!24;UBERON:0006562!3.59e-09!24;UBERON:0001557!3.59e-09!24;UBERON:0001042!3.59e-09!24;UBERON:0008814!3.59e-09!24;UBERON:0009145!3.59e-09!24;UBERON:0002370!4.77e-09!23;UBERON:0000974!4.77e-09!23;UBERON:0004807!4.77e-09!23;UBERON:0005058!4.77e-09!23;UBERON:0003351!4.77e-09!23;UBERON:0009113!4.77e-09!23;UBERON:0003295!4.77e-09!23;UBERON:0009722!4.77e-09!23;UBERON:0005562!4.77e-09!23;UBERON:0007690!4.77e-09!23;UBERON:0000926!1.74e-08!193;UBERON:0004120!1.74e-08!193;UBERON:0006603!1.74e-08!193;UBERON:0002371!3.61e-08!16;UBERON:0002384!9.86e-08!46;UBERON:0005057!4.06e-07!51;UBERON:0002204!4.94e-07!32;UBERON:0001474!6.82e-07!22;UBERON:0004765!6.82e-07!22;UBERON:0001434!6.82e-07!22;UBERON:0000072!7.82e-07!27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,8.78e-21,48;UBERON:0002405,8.78e-21,48;UBERON:0002390,2.54e-19,45;UBERON:0003061,2.54e-19,45;UBERON:0003081,7.06e-13,87;UBERON:0004177,9.69e-12,29;UBERON:0005057,9.69e-12,29;UBERON:0000077,2.62e-11,35;UBERON:0003408,6.18e-10,24;UBERON:0006562,1.24e-09,24;UBERON:0001557,1.24e-09,24;UBERON:0001042,1.24e-09,24;UBERON:0008814,1.24e-09,24;UBERON:0009145,1.24e-09,24;UBERON:0002370,1.65e-09,23;UBERON:0000974,1.65e-09,23;UBERON:0004807,1.65e-09,23;UBERON:0005058,1.65e-09,23;UBERON:0003351,1.65e-09,23;UBERON:0009113,1.65e-09,23;UBERON:0003295,1.65e-09,23;UBERON:0009722,1.65e-09,23;UBERON:0005562,1.65e-09,23;UBERON:0007690,1.65e-09,23;UBERON:0002371,2.20e-08,16;UBERON:0002384,2.66e-08,46;UBERON:0000926,8.06e-08,120;UBERON:0004120,8.06e-08,120;UBERON:0006603,8.06e-08,120;UBERON:0000072,2.27e-07,27;UBERON:0002204,2.61e-07,32;UBERON:0001474,5.38e-07,22;UBERON:0004765,5.38e-07,22;UBERON:0001434,5.38e-07,22;UBERON:0001004,5.97e-07,42 | |||
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| |||
|short_description=p1@Prkacb | |||
}} |
Revision as of 01:47, 14 September 2013
Short description: | p1@Prkacb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Prkacb_5end |
Coexpression cluster: | MCL_coexpression_mm9:123 |
Association with transcript: | 0bp_to_ENSMUST00000005164, NM_001164200, uc008rru.1_5end |
EntrezGene: | Prkacb |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.09e-10 | 32 |
hematopoietic oligopotent progenitor cell | 1.09e-10 | 32 |
hematopoietic stem cell | 1.09e-10 | 32 |
hematopoietic multipotent progenitor cell | 1.09e-10 | 32 |
hematopoietic lineage restricted progenitor cell | 1.97e-08 | 25 |
connective tissue cell | 2.66e-08 | 46 |
mesenchymal cell | 2.66e-08 | 46 |
lymphoid lineage restricted progenitor cell | 1.44e-07 | 12 |
leukocyte | 1.58e-07 | 17 |
nongranular leukocyte | 1.58e-07 | 17 |
T cell | 5.34e-07 | 11 |
pro-T cell | 5.34e-07 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.