FFCP PHASE1:Mm9::chr3:55337914..55337917,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=1785|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:55337914..55337917,+|id=chr3:55337914..55337917,+|ontology_enrichment_celltype=CL:0000117!1.28e-25!23;CL:0000337!1.28e-25!23;CL:0000540!1.58e-18!33;CL:0000047!1.58e-18!33;CL:0000031!1.58e-18!33;CL:0000404!1.58e-18!33;CL:0000393!6.45e-15!39;CL:0000211!6.45e-15!39;CL:0002319!4.47e-13!43;CL:0000221!1.14e-12!44;CL:0000133!1.14e-12!44;CL:0000055!1.41e-10!50;CL:0002609!7.10e-08!6;CL:0002613!7.47e-08!3;CL:0002321!4.10e-07!70;CL:0000220!4.10e-07!70|ontology_enrichment_celltype_v019_2=CL:0002613,4.15e-39,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.40e-36!34;UBERON:0002791!5.50e-31!29;UBERON:0003528!5.50e-31!29;UBERON:0001893!5.50e-31!29;UBERON:0001049!1.20e-25!52;UBERON:0005068!1.20e-25!52;UBERON:0006241!1.20e-25!52;UBERON:0007135!1.20e-25!52;UBERON:0001017!2.36e-24!73;UBERON:0005743!2.36e-24!73;UBERON:0000073!1.74e-23!75;UBERON:0001016!1.74e-23!75;UBERON:0002616!1.91e-23!49;UBERON:0000955!7.73e-23!50;UBERON:0006238!7.73e-23!50;UBERON:0000956!3.92e-22!21;UBERON:0001869!3.92e-22!21;UBERON:0000203!3.92e-22!21;UBERON:0002780!1.61e-21!39;UBERON:0001890!1.61e-21!39;UBERON:0006240!1.61e-21!39;UBERON:0003080!7.81e-21!40;UBERON:0002346!3.48e-18!71;UBERON:0003075!3.48e-18!71;UBERON:0007284!3.48e-18!71;UBERON:0000033!4.03e-18!63;UBERON:0003056!1.88e-17!49;UBERON:0002021!7.02e-17!10;UBERON:0000411!7.02e-17!10;UBERON:0001950!7.02e-17!10;UBERON:0004121!3.34e-16!102;UBERON:0000924!3.34e-16!102;UBERON:0006601!3.34e-16!102;UBERON:0002619!1.19e-15!17;UBERON:0007811!1.94e-11!86;UBERON:0000153!6.77e-10!94;UBERON:0002420!8.72e-10!8;UBERON:0007245!8.72e-10!8;UBERON:0010009!8.72e-10!8;UBERON:0010011!8.72e-10!8;UBERON:0000454!8.72e-10!8;UBERON:0000025!1.63e-09!114;UBERON:0004111!2.05e-08!122;UBERON:0000064!3.22e-08!99;UBERON:0000369!2.46e-07!5;UBERON:0002435!2.46e-07!5;UBERON:0000204!2.46e-07!5;UBERON:0010082!2.46e-07!5|ontology_enrichment_uberon_v019_2=UBERON:0000369,5.10e-24,5;UBERON:0002435,5.10e-24,5;UBERON:0000204,5.10e-24,5;UBERON:0010082,5.10e-24,5;UBERON:0002420,1.72e-15,8;UBERON:0007245,1.72e-15,8;UBERON:0010009,1.72e-15,8;UBERON:0010011,1.72e-15,8;UBERON:0000454,1.72e-15,8;UBERON:0003528,4.90e-10,29;UBERON:0002791,4.90e-10,29;UBERON:0001893,4.90e-10,29;UBERON:0002020,1.04e-08,34;UBERON:0002780,1.01e-07,39;UBERON:0001890,1.01e-07,39;UBERON:0006240,1.01e-07,39;UBERON:0003080,1.49e-07,40|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,0,0.633831403506179,0,0,0,0,0,0,0,0.207379224616955,0.405017814995072,0.210324961351382,0.285650984403804,0,0.122490799214954,0.383381884072945,0,0,0.383062014255563,0.307213066512487,0.659431438650969,1.55528994124096,1.04182674111352,0.837548997004143,0,0.916789486660861,0.294628585473668,0.569486723196412,0.186399445825301,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0.35333957451034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.628340120440365,0,0,0,0,0,0,0.125654352112864,0.521472960576829,0.255715457330331,0,0,0,0,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163934945376675,0,0,0,0,0,0,0,0,0,0.395287777946524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,0.460325236507177,0.572895513439397,0.515559547031063,0.685082519770642,0,0.675022500231806,0.45032120322422,0.453142408984205,0.51776031175182,0.103787347584177,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0,0,0,0,0,0.147198920134397,0,0,0,0,0,0,0,0,0.135804113845862,0,0,0.0985044823755635,0,0,0,0,0,0,0.191288332068843,0,0|short_description=p@chr3:55337914..55337917,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=1785 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:55337914..55337917,+ | |||
|id=chr3:55337914..55337917,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.28e-25!23;CL:0000337!1.28e-25!23;CL:0000540!1.58e-18!33;CL:0000047!1.58e-18!33;CL:0000031!1.58e-18!33;CL:0000404!1.58e-18!33;CL:0000393!6.45e-15!39;CL:0000211!6.45e-15!39;CL:0002319!4.47e-13!43;CL:0000221!1.14e-12!44;CL:0000133!1.14e-12!44;CL:0000055!1.41e-10!50;CL:0002609!7.10e-08!6;CL:0002613!7.47e-08!3;CL:0002321!4.10e-07!70;CL:0000220!4.10e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002613,4.15e-39,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.40e-36!34;UBERON:0002791!5.50e-31!29;UBERON:0003528!5.50e-31!29;UBERON:0001893!5.50e-31!29;UBERON:0001049!1.20e-25!52;UBERON:0005068!1.20e-25!52;UBERON:0006241!1.20e-25!52;UBERON:0007135!1.20e-25!52;UBERON:0001017!2.36e-24!73;UBERON:0005743!2.36e-24!73;UBERON:0000073!1.74e-23!75;UBERON:0001016!1.74e-23!75;UBERON:0002616!1.91e-23!49;UBERON:0000955!7.73e-23!50;UBERON:0006238!7.73e-23!50;UBERON:0000956!3.92e-22!21;UBERON:0001869!3.92e-22!21;UBERON:0000203!3.92e-22!21;UBERON:0002780!1.61e-21!39;UBERON:0001890!1.61e-21!39;UBERON:0006240!1.61e-21!39;UBERON:0003080!7.81e-21!40;UBERON:0002346!3.48e-18!71;UBERON:0003075!3.48e-18!71;UBERON:0007284!3.48e-18!71;UBERON:0000033!4.03e-18!63;UBERON:0003056!1.88e-17!49;UBERON:0002021!7.02e-17!10;UBERON:0000411!7.02e-17!10;UBERON:0001950!7.02e-17!10;UBERON:0004121!3.34e-16!102;UBERON:0000924!3.34e-16!102;UBERON:0006601!3.34e-16!102;UBERON:0002619!1.19e-15!17;UBERON:0007811!1.94e-11!86;UBERON:0000153!6.77e-10!94;UBERON:0002420!8.72e-10!8;UBERON:0007245!8.72e-10!8;UBERON:0010009!8.72e-10!8;UBERON:0010011!8.72e-10!8;UBERON:0000454!8.72e-10!8;UBERON:0000025!1.63e-09!114;UBERON:0004111!2.05e-08!122;UBERON:0000064!3.22e-08!99;UBERON:0000369!2.46e-07!5;UBERON:0002435!2.46e-07!5;UBERON:0000204!2.46e-07!5;UBERON:0010082!2.46e-07!5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,5.10e-24,5;UBERON:0002435,5.10e-24,5;UBERON:0000204,5.10e-24,5;UBERON:0010082,5.10e-24,5;UBERON:0002420,1.72e-15,8;UBERON:0007245,1.72e-15,8;UBERON:0010009,1.72e-15,8;UBERON:0010011,1.72e-15,8;UBERON:0000454,1.72e-15,8;UBERON:0003528,4.90e-10,29;UBERON:0002791,4.90e-10,29;UBERON:0001893,4.90e-10,29;UBERON:0002020,1.04e-08,34;UBERON:0002780,1.01e-07,39;UBERON:0001890,1.01e-07,39;UBERON:0006240,1.01e-07,39;UBERON:0003080,1.49e-07,40 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,0,0.633831403506179,0,0,0,0,0,0,0,0.207379224616955,0.405017814995072,0.210324961351382,0.285650984403804,0,0.122490799214954,0.383381884072945,0,0,0.383062014255563,0.307213066512487,0.659431438650969,1.55528994124096,1.04182674111352,0.837548997004143,0,0.916789486660861,0.294628585473668,0.569486723196412,0.186399445825301,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0.35333957451034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.628340120440365,0,0,0,0,0,0,0.125654352112864,0.521472960576829,0.255715457330331,0,0,0,0,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163934945376675,0,0,0,0,0,0,0,0,0,0.395287777946524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6942555278512,0.460325236507177,0.572895513439397,0.515559547031063,0.685082519770642,0,0.675022500231806,0.45032120322422,0.453142408984205,0.51776031175182,0.103787347584177,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0,0,0,0,0,0.147198920134397,0,0,0,0,0,0,0,0,0.135804113845862,0,0,0.0985044823755635,0,0,0,0,0,0,0.191288332068843,0,0 | |||
|short_description=p@chr3:55337914..55337917,+ | |||
}} |
Revision as of 02:19, 14 September 2013
Short description: | p@chr3:55337914..55337917, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:55337914..55337917, + |
Coexpression cluster: | MCL_coexpression_mm9:1785 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
striatum neuron | 4.15e-39 | 3 |
Ontology term | p-value | n |
---|---|---|
corpus striatum | 5.10e-24 | 5 |
striatum | 5.10e-24 | 5 |
ventral part of telencephalon | 5.10e-24 | 5 |
future corpus striatum | 5.10e-24 | 5 |
basal ganglion | 1.72e-15 | 8 |
nuclear complex of neuraxis | 1.72e-15 | 8 |
aggregate regional part of brain | 1.72e-15 | 8 |
collection of basal ganglia | 1.72e-15 | 8 |
cerebral subcortex | 1.72e-15 | 8 |
brain grey matter | 4.90e-10 | 29 |
regional part of telencephalon | 4.90e-10 | 29 |
telencephalon | 4.90e-10 | 29 |
gray matter | 1.04e-08 | 34 |
regional part of forebrain | 1.01e-07 | 39 |
forebrain | 1.01e-07 | 39 |
future forebrain | 1.01e-07 | 39 |
anterior neural tube | 1.49e-07 | 40 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.