FFCP PHASE1:Mm9::chr5:124022985..124023040,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=77573|HGNC=|MCL_coexpression_id=1|UniProt=Q9D2N9|association_with_transcript=0bp_to_ENSMUST00000031388,NM_029929,uc008znz.2_5end|description=CAGE_peak_1_at_Vps33a_5end|id=chr5:124022985..124023040,-|ontology_enrichment_celltype=CL:0000117!3.52e-12!23;CL:0000337!3.52e-12!23;CL:0000540!3.98e-10!33;CL:0000047!3.98e-10!33;CL:0000031!3.98e-10!33;CL:0000404!3.98e-10!33;CL:0000393!7.59e-09!39;CL:0000211!7.59e-09!39|ontology_enrichment_celltype_v019_2=CL:0000117,3.52e-12,23;CL:0000337,3.52e-12,23;CL:0000540,3.98e-10,33;CL:0000047,3.98e-10,33;CL:0000031,3.98e-10,33;CL:0000404,3.98e-10,33;CL:0000393,7.59e-09,39;CL:0000211,7.59e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!4.83e-18!52;UBERON:0005068!4.83e-18!52;UBERON:0006241!4.83e-18!52;UBERON:0007135!4.83e-18!52;UBERON:0000955!7.03e-18!50;UBERON:0006238!7.03e-18!50;UBERON:0000073!7.11e-18!75;UBERON:0001016!7.11e-18!75;UBERON:0004121!8.94e-18!102;UBERON:0000924!8.94e-18!102;UBERON:0006601!8.94e-18!102;UBERON:0002616!2.32e-17!49;UBERON:0002346!3.16e-17!71;UBERON:0003075!3.16e-17!71;UBERON:0007284!3.16e-17!71;UBERON:0001017!4.33e-17!73;UBERON:0005743!4.33e-17!73;UBERON:0000033!1.97e-16!63;UBERON:0002020!4.16e-16!34;UBERON:0003080!8.41e-16!40;UBERON:0002780!3.27e-15!39;UBERON:0001890!3.27e-15!39;UBERON:0006240!3.27e-15!39;UBERON:0003056!7.21e-15!49;UBERON:0002791!2.21e-14!29;UBERON:0003528!2.21e-14!29;UBERON:0001893!2.21e-14!29;UBERON:0007811!5.36e-11!86;UBERON:0000956!1.25e-09!21;UBERON:0001869!1.25e-09!21;UBERON:0000203!1.25e-09!21;UBERON:0000153!5.31e-09!94;UBERON:0002619!6.71e-08!17;UBERON:0002021!3.24e-07!10;UBERON:0000411!3.24e-07!10;UBERON:0001950!3.24e-07!10;UBERON:0000025!3.42e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.85e-19,54;UBERON:0001049,4.83e-18,52;UBERON:0005068,4.83e-18,52;UBERON:0006241,4.83e-18,52;UBERON:0007135,4.83e-18,52;UBERON:0001016,7.11e-18,75;UBERON:0004121,2.57e-17,95;UBERON:0000924,2.57e-17,95;UBERON:0006601,2.57e-17,95;UBERON:0002346,3.97e-17,64;UBERON:0003075,3.97e-17,64;UBERON:0007284,3.97e-17,64;UBERON:0001017,4.33e-17,73;UBERON:0002020,4.16e-16,34;UBERON:0000955,4.23e-16,47;UBERON:0006238,4.23e-16,47;UBERON:0010371,7.32e-16,73;UBERON:0003080,8.41e-16,40;UBERON:0002616,1.36e-15,46;UBERON:0002780,3.27e-15,39;UBERON:0001890,3.27e-15,39;UBERON:0006240,3.27e-15,39;UBERON:0003056,7.21e-15,49;UBERON:0003528,2.21e-14,29;UBERON:0002791,2.21e-14,29;UBERON:0001893,2.21e-14,29;UBERON:0010314,3.65e-12,92;UBERON:0000956,1.25e-09,21;UBERON:0001869,1.25e-09,21;UBERON:0000203,1.25e-09,21;UBERON:0002619,6.71e-08,17;UBERON:0002021,3.24e-07,10;UBERON:0000411,3.24e-07,10;UBERON:0001950,3.24e-07,10;UBERON:0000025,3.42e-07,114|phase1_expression=13.9329496981171,17.4487703819681,14.5599756604652,18.1478526784098,10.5188103288733,10.9121526742728,9.57811826441655,16.6569087239633,6.47628121897667,5.38348410540585,9.75942418885378,11.0883301003518,15.0656642339461,14.4243663991346,11.6588416635482,10.7311891716608,11.8925519281785,15.930839350591,18.921791837592,18.2487550273153,18.1992640923289,14.0000241193248,11.4927907221132,10.239515058778,10.5528269290898,12.0588712464154,13.3536218809313,11.4199753323521,12.1614988452079,13.8616571367962,12.4169085966971,15.8757668364908,11.0711661765223,15.8481681015439,13.5760261283099,10.140313366868,10.2084678131185,19.2524550138978,16.4080422349998,16.7527598071615,23.5292595212406,15.0270006690858,16.5073520030592,11.5825072537531,15.8148012702443,15.7850206859046,7.04152209913235,6.5407546914134,13.1811709640683,9.72149495371417,8.9591309840232,5.75010257459886,18.7916518784665,20.3101399763176,17.4768775554081,13.1202312378333,12.3209379173665,13.9231464914909,23.0640765379941,31.739458756322,23.4517619297286,8.13226876965917,8.89294796111139,16.1981949110652,11.8663963508037,11.3676818391376,10.7856039786626,6.91592949578798,20.7379224616955,18.9008313664367,19.3498964443271,18.852964970651,19.2155630627904,21.435889862617,22.5236856892855,22.0612508786405,20.9220173898839,34.0925192687451,29.4924543851987,26.2453712583086,27.9037312987349,32.2966289745191,28.7558488971422,21.9477417912355,28.2676758387099,17.3830865429464,19.5049202694771,19.9447407033072,20.5217983932929,18.0616028655217,15.6526823898906,11.185510400758,7.47968467078526,21.5881276655127,7.79731700937203,17.0250217096988,17.6959969366007,7.15807354827843,7.79358013808606,6.36011234118612,12.5350643601246,14.115912515575,28.028576367731,14.2213340630666,5.19578498426914,3.80039798212648,6.57181778519218,11.9893073705013,21.2329064590681,17.813056687779,13.7053408145247,12.1786191324856,15.2206228188999,13.7157602902887,16.1096528775916,18.598655516792,17.5508427091405,18.074919614989,20.3460426948471,14.235482795372,18.7715290691335,10.1823803158397,14.9113408974498,21.0802173848314,28.4847521266299,14.0501380364725,8.74650408893218,3.59941638596045,8.6407754409684,26.3631525352488,33.3975440057597,28.3978835775074,33.7219181173016,36.5673103982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| ||
|EntrezGene=77573 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q9D2N9 | |||
|association_with_transcript=0bp_to_ENSMUST00000031388,NM_029929,uc008znz.2_5end | |||
|description=CAGE_peak_1_at_Vps33a_5end | |||
|id=chr5:124022985..124023040,- | |||
|ontology_enrichment_celltype=CL:0000117!3.52e-12!23;CL:0000337!3.52e-12!23;CL:0000540!3.98e-10!33;CL:0000047!3.98e-10!33;CL:0000031!3.98e-10!33;CL:0000404!3.98e-10!33;CL:0000393!7.59e-09!39;CL:0000211!7.59e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.52e-12,23;CL:0000337,3.52e-12,23;CL:0000540,3.98e-10,33;CL:0000047,3.98e-10,33;CL:0000031,3.98e-10,33;CL:0000404,3.98e-10,33;CL:0000393,7.59e-09,39;CL:0000211,7.59e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.83e-18!52;UBERON:0005068!4.83e-18!52;UBERON:0006241!4.83e-18!52;UBERON:0007135!4.83e-18!52;UBERON:0000955!7.03e-18!50;UBERON:0006238!7.03e-18!50;UBERON:0000073!7.11e-18!75;UBERON:0001016!7.11e-18!75;UBERON:0004121!8.94e-18!102;UBERON:0000924!8.94e-18!102;UBERON:0006601!8.94e-18!102;UBERON:0002616!2.32e-17!49;UBERON:0002346!3.16e-17!71;UBERON:0003075!3.16e-17!71;UBERON:0007284!3.16e-17!71;UBERON:0001017!4.33e-17!73;UBERON:0005743!4.33e-17!73;UBERON:0000033!1.97e-16!63;UBERON:0002020!4.16e-16!34;UBERON:0003080!8.41e-16!40;UBERON:0002780!3.27e-15!39;UBERON:0001890!3.27e-15!39;UBERON:0006240!3.27e-15!39;UBERON:0003056!7.21e-15!49;UBERON:0002791!2.21e-14!29;UBERON:0003528!2.21e-14!29;UBERON:0001893!2.21e-14!29;UBERON:0007811!5.36e-11!86;UBERON:0000956!1.25e-09!21;UBERON:0001869!1.25e-09!21;UBERON:0000203!1.25e-09!21;UBERON:0000153!5.31e-09!94;UBERON:0002619!6.71e-08!17;UBERON:0002021!3.24e-07!10;UBERON:0000411!3.24e-07!10;UBERON:0001950!3.24e-07!10;UBERON:0000025!3.42e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.85e-19,54;UBERON:0001049,4.83e-18,52;UBERON:0005068,4.83e-18,52;UBERON:0006241,4.83e-18,52;UBERON:0007135,4.83e-18,52;UBERON:0001016,7.11e-18,75;UBERON:0004121,2.57e-17,95;UBERON:0000924,2.57e-17,95;UBERON:0006601,2.57e-17,95;UBERON:0002346,3.97e-17,64;UBERON:0003075,3.97e-17,64;UBERON:0007284,3.97e-17,64;UBERON:0001017,4.33e-17,73;UBERON:0002020,4.16e-16,34;UBERON:0000955,4.23e-16,47;UBERON:0006238,4.23e-16,47;UBERON:0010371,7.32e-16,73;UBERON:0003080,8.41e-16,40;UBERON:0002616,1.36e-15,46;UBERON:0002780,3.27e-15,39;UBERON:0001890,3.27e-15,39;UBERON:0006240,3.27e-15,39;UBERON:0003056,7.21e-15,49;UBERON:0003528,2.21e-14,29;UBERON:0002791,2.21e-14,29;UBERON:0001893,2.21e-14,29;UBERON:0010314,3.65e-12,92;UBERON:0000956,1.25e-09,21;UBERON:0001869,1.25e-09,21;UBERON:0000203,1.25e-09,21;UBERON:0002619,6.71e-08,17;UBERON:0002021,3.24e-07,10;UBERON:0000411,3.24e-07,10;UBERON:0001950,3.24e-07,10;UBERON:0000025,3.42e-07,114 | |||
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| |||
|short_description=p1@Vps33a | |||
}} |
Revision as of 06:24, 14 September 2013
Short description: | p1@Vps33a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Vps33a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000031388, NM_029929, uc008znz.2_5end |
EntrezGene: | Vps33a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.52e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.52e-12 | 23 |
neuron | 3.98e-10 | 33 |
neuronal stem cell | 3.98e-10 | 33 |
neuroblast | 3.98e-10 | 33 |
electrically signaling cell | 3.98e-10 | 33 |
electrically responsive cell | 7.59e-09 | 39 |
electrically active cell | 7.59e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.85e-19 | 54 |
neural tube | 4.83e-18 | 52 |
neural rod | 4.83e-18 | 52 |
future spinal cord | 4.83e-18 | 52 |
neural keel | 4.83e-18 | 52 |
nervous system | 7.11e-18 | 75 |
ectoderm-derived structure | 2.57e-17 | 95 |
ectoderm | 2.57e-17 | 95 |
presumptive ectoderm | 2.57e-17 | 95 |
neurectoderm | 3.97e-17 | 64 |
neural plate | 3.97e-17 | 64 |
presumptive neural plate | 3.97e-17 | 64 |
central nervous system | 4.33e-17 | 73 |
gray matter | 4.16e-16 | 34 |
brain | 4.23e-16 | 47 |
future brain | 4.23e-16 | 47 |
ecto-epithelium | 7.32e-16 | 73 |
anterior neural tube | 8.41e-16 | 40 |
regional part of brain | 1.36e-15 | 46 |
regional part of forebrain | 3.27e-15 | 39 |
forebrain | 3.27e-15 | 39 |
future forebrain | 3.27e-15 | 39 |
pre-chordal neural plate | 7.21e-15 | 49 |
brain grey matter | 2.21e-14 | 29 |
regional part of telencephalon | 2.21e-14 | 29 |
telencephalon | 2.21e-14 | 29 |
structure with developmental contribution from neural crest | 3.65e-12 | 92 |
cerebral cortex | 1.25e-09 | 21 |
cerebral hemisphere | 1.25e-09 | 21 |
pallium | 1.25e-09 | 21 |
regional part of cerebral cortex | 6.71e-08 | 17 |
occipital lobe | 3.24e-07 | 10 |
visual cortex | 3.24e-07 | 10 |
neocortex | 3.24e-07 | 10 |
tube | 3.42e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.