FFCP PHASE1:Mm9::chr6:36759938..36759974,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19242|HGNC=|MCL_coexpression_id=3559|UniProt=Q3UZI5|association_with_transcript=185bp_to_ENSMUST00000166530_5end|description=CAGE_peak_5_at_Ptn_5end|id=chr6:36759938..36759974,-|ontology_enrichment_celltype=CL:0000117!1.66e-08!23;CL:0000337!1.66e-08!23;CL:0000540!9.43e-08!33;CL:0000047!9.43e-08!33;CL:0000031!9.43e-08!33;CL:0000404!9.43e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.23e-08,23;CL:0000337,1.23e-08,23;CL:0000540,7.22e-08,33;CL:0000047,7.22e-08,33;CL:0000031,7.22e-08,33;CL:0000404,7.22e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.82e-20!73;UBERON:0005743!2.82e-20!73;UBERON:0000073!2.32e-19!75;UBERON:0001016!2.32e-19!75;UBERON:0004121!8.51e-19!102;UBERON:0000924!8.51e-19!102;UBERON:0006601!8.51e-19!102;UBERON:0001049!4.71e-17!52;UBERON:0005068!4.71e-17!52;UBERON:0006241!4.71e-17!52;UBERON:0007135!4.71e-17!52;UBERON:0000033!8.11e-16!63;UBERON:0000955!9.56e-16!50;UBERON:0006238!9.56e-16!50;UBERON:0002346!1.15e-15!71;UBERON:0003075!1.15e-15!71;UBERON:0007284!1.15e-15!71;UBERON:0002616!3.59e-15!49;UBERON:0003080!1.06e-14!40;UBERON:0003056!2.48e-14!49;UBERON:0002780!4.24e-14!39;UBERON:0001890!4.24e-14!39;UBERON:0006240!4.24e-14!39;UBERON:0002020!7.02e-14!34;UBERON:0002791!2.52e-11!29;UBERON:0003528!2.52e-11!29;UBERON:0001893!2.52e-11!29;UBERON:0000468!4.04e-10!333;UBERON:0000153!5.87e-09!94;UBERON:0002021!4.73e-08!10;UBERON:0000411!4.73e-08!10;UBERON:0001950!4.73e-08!10;UBERON:0000956!1.10e-07!21;UBERON:0001869!1.10e-07!21;UBERON:0000203!1.10e-07!21;UBERON:0007811!3.74e-07!86;UBERON:0002619!7.25e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.49e-20,73;UBERON:0001016,7.86e-19,75;UBERON:0004121,1.17e-18,95;UBERON:0000924,1.17e-18,95;UBERON:0006601,1.17e-18,95;UBERON:0000073,1.90e-17,54;UBERON:0010371,2.82e-17,73;UBERON:0001049,1.12e-16,52;UBERON:0005068,1.12e-16,52;UBERON:0006241,1.12e-16,52;UBERON:0007135,1.12e-16,52;UBERON:0002346,3.61e-16,64;UBERON:0003075,3.61e-16,64;UBERON:0007284,3.61e-16,64;UBERON:0010314,8.59e-15,92;UBERON:0003080,9.82e-15,40;UBERON:0003056,2.23e-14,49;UBERON:0000955,3.65e-14,47;UBERON:0006238,3.65e-14,47;UBERON:0002780,4.01e-14,39;UBERON:0001890,4.01e-14,39;UBERON:0006240,4.01e-14,39;UBERON:0002020,6.88e-14,34;UBERON:0002616,1.35e-13,46;UBERON:0003528,2.70e-11,29;UBERON:0002791,2.70e-11,29;UBERON:0001893,2.70e-11,29;UBERON:0002021,3.58e-08,10;UBERON:0000411,3.58e-08,10;UBERON:0001950,3.58e-08,10;UBERON:0000956,1.32e-07,21;UBERON:0001869,1.32e-07,21;UBERON:0000203,1.32e-07,21;UBERON:0002619,9.17e-07,17|phase1_expression=164.633014823728,0,0.909998478779072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.8855411393369,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.506884656097573,0,0.782391344348039,0.65407546914134,1.75748946187577,0.58328969722285,21.9778681951819,25.8754615856949,0,0,0,2.05807548828758,11.1748041576115,9.7977697532714,26.3011399117477,25.9205579843296,17.747279298173,0.677689064138264,5.33576877666684,0,0,0,13.4820049733282,14.2160772968975,17.7309237047497,15.6606888464761,15.1433972172995,28.5650984403804,45.2780508950808,18.618601480673,13.2266750005166,13.7882817991503,23.1243350098716,24.7713435885264,24.2698322544865,34.1585485221202,34.9482798561205,30.2129754922921,27.080750903134,24.1987922313622,20.1693687065389,29.1682299618931,34.1692033917847,31.8743052361264,0.908714319998209,2.87171928405785,0,0.860423876981386,0,0,0,0,5.05599912474307,0.340860645156116,0,0.35333957451034,159.434751187202,0,0,0,1.29894624606728,0.253359865475099,1.01104889002957,2.05530983494308,1.03575153458869,11.4300447079915,11.6235168933311,10.9607572192371,6.91846491768175,6.33035090321015,7.99603208522793,7.03732911446183,3.21353458054686,1.15679485535929,0.884610551949874,23.6179600923217,6.18356251689102,10.1823803158397,0,10.2473278954042,8.58731497935166,1.27728527604296,0,0,0.127070227073065,58.268558728476,73.2000964509802,38.0732686901979,126.71792942017,120.697695859916,38.6485762880782,55.8109944953086,37.8842433523177,2.61254638281195,0.505445516867349,2.31486041475121,8.58794923553845,11.2652031172402,14.4049703844279,15.6733010549144,13.6072998302656,19.4732854832972,15.2733811032358,12.1590584247337,7.97601573851516,24.7728965019843,22.1698416446576,29.8106196101502,44.2095126268701,38.3077383174383,37.8639130990616,11.9420560091096,0,0,0,15.3273071676271,16.6513502586578,20.7071370680167,21.5437709382541,13.9702604540657,14.6553757243009,9.53389173476672,6.43856163359086,5.7215017759913,7.07607354627966,5.74586124276833,1.94565142910054,1.31579988682799,1.3173006917463,0.671032093801859,29.8611726961061,19.9634948015812,0,1.32225283331772,27.5141843190452,31.1197140292988,21.2631311181454,11.4959609035305,7.78323153457046,12.5548913234289,1.89811624617805,7.74085087202851,8.54539709920916,10.544693018181,6.62877896205008,2.69645822596266,3.45820879799511,2.19055400579804,8.15571974098251,8.22589290790047,7.88954149711563,8.349704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| ||
|EntrezGene=19242 | |||
|HGNC= | |||
|MCL_coexpression_id=3559 | |||
|UniProt=Q3UZI5 | |||
|association_with_transcript=185bp_to_ENSMUST00000166530_5end | |||
|description=CAGE_peak_5_at_Ptn_5end | |||
|id=chr6:36759938..36759974,- | |||
|ontology_enrichment_celltype=CL:0000117!1.66e-08!23;CL:0000337!1.66e-08!23;CL:0000540!9.43e-08!33;CL:0000047!9.43e-08!33;CL:0000031!9.43e-08!33;CL:0000404!9.43e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.23e-08,23;CL:0000337,1.23e-08,23;CL:0000540,7.22e-08,33;CL:0000047,7.22e-08,33;CL:0000031,7.22e-08,33;CL:0000404,7.22e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.82e-20!73;UBERON:0005743!2.82e-20!73;UBERON:0000073!2.32e-19!75;UBERON:0001016!2.32e-19!75;UBERON:0004121!8.51e-19!102;UBERON:0000924!8.51e-19!102;UBERON:0006601!8.51e-19!102;UBERON:0001049!4.71e-17!52;UBERON:0005068!4.71e-17!52;UBERON:0006241!4.71e-17!52;UBERON:0007135!4.71e-17!52;UBERON:0000033!8.11e-16!63;UBERON:0000955!9.56e-16!50;UBERON:0006238!9.56e-16!50;UBERON:0002346!1.15e-15!71;UBERON:0003075!1.15e-15!71;UBERON:0007284!1.15e-15!71;UBERON:0002616!3.59e-15!49;UBERON:0003080!1.06e-14!40;UBERON:0003056!2.48e-14!49;UBERON:0002780!4.24e-14!39;UBERON:0001890!4.24e-14!39;UBERON:0006240!4.24e-14!39;UBERON:0002020!7.02e-14!34;UBERON:0002791!2.52e-11!29;UBERON:0003528!2.52e-11!29;UBERON:0001893!2.52e-11!29;UBERON:0000468!4.04e-10!333;UBERON:0000153!5.87e-09!94;UBERON:0002021!4.73e-08!10;UBERON:0000411!4.73e-08!10;UBERON:0001950!4.73e-08!10;UBERON:0000956!1.10e-07!21;UBERON:0001869!1.10e-07!21;UBERON:0000203!1.10e-07!21;UBERON:0007811!3.74e-07!86;UBERON:0002619!7.25e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.49e-20,73;UBERON:0001016,7.86e-19,75;UBERON:0004121,1.17e-18,95;UBERON:0000924,1.17e-18,95;UBERON:0006601,1.17e-18,95;UBERON:0000073,1.90e-17,54;UBERON:0010371,2.82e-17,73;UBERON:0001049,1.12e-16,52;UBERON:0005068,1.12e-16,52;UBERON:0006241,1.12e-16,52;UBERON:0007135,1.12e-16,52;UBERON:0002346,3.61e-16,64;UBERON:0003075,3.61e-16,64;UBERON:0007284,3.61e-16,64;UBERON:0010314,8.59e-15,92;UBERON:0003080,9.82e-15,40;UBERON:0003056,2.23e-14,49;UBERON:0000955,3.65e-14,47;UBERON:0006238,3.65e-14,47;UBERON:0002780,4.01e-14,39;UBERON:0001890,4.01e-14,39;UBERON:0006240,4.01e-14,39;UBERON:0002020,6.88e-14,34;UBERON:0002616,1.35e-13,46;UBERON:0003528,2.70e-11,29;UBERON:0002791,2.70e-11,29;UBERON:0001893,2.70e-11,29;UBERON:0002021,3.58e-08,10;UBERON:0000411,3.58e-08,10;UBERON:0001950,3.58e-08,10;UBERON:0000956,1.32e-07,21;UBERON:0001869,1.32e-07,21;UBERON:0000203,1.32e-07,21;UBERON:0002619,9.17e-07,17 | |||
|phase1_expression=164.633014823728,0,0.909998478779072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.8855411393369,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.506884656097573,0,0.782391344348039,0.65407546914134,1.75748946187577,0.58328969722285,21.9778681951819,25.8754615856949,0,0,0,2.05807548828758,11.1748041576115,9.7977697532714,26.3011399117477,25.9205579843296,17.747279298173,0.677689064138264,5.33576877666684,0,0,0,13.4820049733282,14.2160772968975,17.7309237047497,15.6606888464761,15.1433972172995,28.5650984403804,45.2780508950808,18.618601480673,13.2266750005166,13.7882817991503,23.1243350098716,24.7713435885264,24.2698322544865,34.1585485221202,34.9482798561205,30.2129754922921,27.080750903134,24.1987922313622,20.1693687065389,29.1682299618931,34.1692033917847,31.8743052361264,0.908714319998209,2.87171928405785,0,0.860423876981386,0,0,0,0,5.05599912474307,0.340860645156116,0,0.35333957451034,159.434751187202,0,0,0,1.29894624606728,0.253359865475099,1.01104889002957,2.05530983494308,1.03575153458869,11.4300447079915,11.6235168933311,10.9607572192371,6.91846491768175,6.33035090321015,7.99603208522793,7.03732911446183,3.21353458054686,1.15679485535929,0.884610551949874,23.6179600923217,6.18356251689102,10.1823803158397,0,10.2473278954042,8.58731497935166,1.27728527604296,0,0,0.127070227073065,58.268558728476,73.2000964509802,38.0732686901979,126.71792942017,120.697695859916,38.6485762880782,55.8109944953086,37.8842433523177,2.61254638281195,0.505445516867349,2.31486041475121,8.58794923553845,11.2652031172402,14.4049703844279,15.6733010549144,13.6072998302656,19.4732854832972,15.2733811032358,12.1590584247337,7.97601573851516,24.7728965019843,22.1698416446576,29.8106196101502,44.2095126268701,38.3077383174383,37.8639130990616,11.9420560091096,0,0,0,15.3273071676271,16.6513502586578,20.7071370680167,21.5437709382541,13.9702604540657,14.6553757243009,9.53389173476672,6.43856163359086,5.7215017759913,7.07607354627966,5.74586124276833,1.94565142910054,1.31579988682799,1.3173006917463,0.671032093801859,29.8611726961061,19.9634948015812,0,1.32225283331772,27.5141843190452,31.1197140292988,21.2631311181454,11.4959609035305,7.78323153457046,12.5548913234289,1.89811624617805,7.74085087202851,8.54539709920916,10.544693018181,6.62877896205008,2.69645822596266,3.45820879799511,2.19055400579804,8.15571974098251,8.22589290790047,7.88954149711563,8.34970444165788,6.0125271021964,8.20589092716727,1.83385957660346,0.442830443938806,0.156998727841375,0.493588655687202,0,6.17326891149548,5.89676985339609,1.34917267430912,1.21716072833102,0.72353147925725,1.2731292589071,0.575392274901621,0.810676133875177,0.549122826376163,0,1.11642284300551,0.936113019343682,0,0.179397413521912,0,0.184753190166605,28.8026945891137,5.54080919902888,5.7713329163564,3.05097322775053,1.50755631697634,2.61848004974615,1.75620283072019,3.15270288212382,3.98636441367795,1.91345722388985,0.655453258862952,1.55416483679306,0.433947175744535,0,0,0.983528546038072,2.20749397043786,32.7523203575096,29.420133334643,583.772340486341,3.53459298086122,7.2566890465739,9.37052986311932,10.7711698866399,12.4263774935327,10.2487390077901,10.190755108398,8.50102473517278,8.18316402151673,7.51046778098395,43.378377716944,6.38730383437209,26.7098405500883,42.3506094319298,20.951205617512,0,26.705869977048,17.8370898609203,13.3909606626688,5.90603785761546,12.912276213645,9.8202751403924,17.0860852854428,13.5469003786194,5.37262488490887,1.05418608574999,1.03135543248187,64.0026458817121,14.2248264284735,10.2193360188376,15.8609405923378,26.7783752799833,24.4365280114837,29.6188237083818,10.9607381681256,10.3255551548033,1.48282449604674,8.38007912608855,28.855094264759,14.8547272560233,14.71635368247,13.4890748723544,17.7272171724666,4.66369338607761,27.0720940935344,0,14.4470807574256,5.55583582109135,1.31857919903284,0,0,0.509935289981566,0.139951452323658,0.276399947608848,10.5013767981662,21.8271835570983,22.9750997853339,22.0330895276475,23.4178891536205,18.5608179184251,19.1507371866445,20.415403564158,8.11443420150492,5.18459893167171,0,0,11.3632574993424,14.2294301793104,25.4731056730702,15.8866582877609,19.767866682421,16.3126561717598,6.2498104725096,1.57289016638566,1.44950472495604,0,0.632022241256357,21.8943232513377,17.7689955895151,6.23619950293416,2.68540043501222,3.17890167650024,1.9231271923195,1.77227432609493,2.52416124870369,1.67654974641,0.907435666231565,0.584747284438515,0.577271049841977,0.350630706544707,6.80191150845634,0,0,0,2.51146472241848,47.6713487646002,18.3151624267265,14.5770497773765,2.50786052017682,121.421646162669,135.33561953311,112.860416147561,88.6762420893428,160.30930962633,142.014052709264,138.37961254752,161.665311957495,169.022118551108,177.074026619122,10.3787347584177,27.9317411380722,30.7320490357442,20.4209642337367,12.157563432423,7.72142735490059,20.8911924133518,17.9250499797838,21.1806678330598,18.699593670521,19.5179060915485,19.9943921869241,17.4173203893981,17.542891758934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| |||
|short_description=p5@Ptn | |||
}} |
Revision as of 09:43, 14 September 2013
Short description: | p5@Ptn |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Ptn_5end |
Coexpression cluster: | MCL_coexpression_mm9:3559 |
Association with transcript: | 185bp_to_ENSMUST00000166530_5end |
EntrezGene: | Ptn |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.23e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.23e-08 | 23 |
neuron | 7.22e-08 | 33 |
neuronal stem cell | 7.22e-08 | 33 |
neuroblast | 7.22e-08 | 33 |
electrically signaling cell | 7.22e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.49e-20 | 73 |
nervous system | 7.86e-19 | 75 |
ectoderm-derived structure | 1.17e-18 | 95 |
ectoderm | 1.17e-18 | 95 |
presumptive ectoderm | 1.17e-18 | 95 |
regional part of nervous system | 1.90e-17 | 54 |
ecto-epithelium | 2.82e-17 | 73 |
neural tube | 1.12e-16 | 52 |
neural rod | 1.12e-16 | 52 |
future spinal cord | 1.12e-16 | 52 |
neural keel | 1.12e-16 | 52 |
neurectoderm | 3.61e-16 | 64 |
neural plate | 3.61e-16 | 64 |
presumptive neural plate | 3.61e-16 | 64 |
structure with developmental contribution from neural crest | 8.59e-15 | 92 |
anterior neural tube | 9.82e-15 | 40 |
pre-chordal neural plate | 2.23e-14 | 49 |
brain | 3.65e-14 | 47 |
future brain | 3.65e-14 | 47 |
regional part of forebrain | 4.01e-14 | 39 |
forebrain | 4.01e-14 | 39 |
future forebrain | 4.01e-14 | 39 |
gray matter | 6.88e-14 | 34 |
regional part of brain | 1.35e-13 | 46 |
brain grey matter | 2.70e-11 | 29 |
regional part of telencephalon | 2.70e-11 | 29 |
telencephalon | 2.70e-11 | 29 |
occipital lobe | 3.58e-08 | 10 |
visual cortex | 3.58e-08 | 10 |
neocortex | 3.58e-08 | 10 |
cerebral cortex | 1.32e-07 | 21 |
cerebral hemisphere | 1.32e-07 | 21 |
pallium | 1.32e-07 | 21 |
regional part of cerebral cortex | 9.17e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.