FFCP PHASE1:Mm9::chr7:107376148..107376216,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=70974|HGNC=|MCL_coexpression_id=1|UniProt=E0CX81|association_with_transcript=0bp_to_ENSMUST00000162108_5end|description=CAGE_peak_1_at_Pgm2l1_5end|id=chr7:107376148..107376216,+|ontology_enrichment_celltype=CL:0000117!2.52e-12!23;CL:0000337!2.52e-12!23;CL:0000540!3.99e-09!33;CL:0000047!3.99e-09!33;CL:0000031!3.99e-09!33;CL:0000404!3.99e-09!33|ontology_enrichment_celltype_v019_2=CL:0000117,2.48e-12,23;CL:0000337,2.48e-12,23;CL:0000540,4.50e-09,33;CL:0000047,4.50e-09,33;CL:0000031,4.50e-09,33;CL:0000404,4.50e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.86e-17!63;UBERON:0001049!1.52e-16!52;UBERON:0005068!1.52e-16!52;UBERON:0006241!1.52e-16!52;UBERON:0007135!1.52e-16!52;UBERON:0007811!6.71e-16!86;UBERON:0002346!7.23e-16!71;UBERON:0003075!7.23e-16!71;UBERON:0007284!7.23e-16!71;UBERON:0000955!2.09e-15!50;UBERON:0006238!2.09e-15!50;UBERON:0003056!3.48e-15!49;UBERON:0002616!5.38e-15!49;UBERON:0002020!6.82e-15!34;UBERON:0000073!9.21e-15!75;UBERON:0001016!9.21e-15!75;UBERON:0000153!1.03e-14!94;UBERON:0001017!1.06e-14!73;UBERON:0005743!1.06e-14!73;UBERON:0003080!3.79e-13!40;UBERON:0002780!1.14e-12!39;UBERON:0001890!1.14e-12!39;UBERON:0006240!1.14e-12!39;UBERON:0004121!2.87e-12!102;UBERON:0000924!2.87e-12!102;UBERON:0006601!2.87e-12!102;UBERON:0002791!5.78e-12!29;UBERON:0003528!5.78e-12!29;UBERON:0001893!5.78e-12!29;UBERON:0000956!4.19e-08!21;UBERON:0001869!4.19e-08!21;UBERON:0000203!4.19e-08!21;UBERON:0002021!5.94e-08!10;UBERON:0000411!5.94e-08!10;UBERON:0001950!5.94e-08!10;UBERON:0002619!8.16e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.57e-19,64;UBERON:0003075,2.57e-19,64;UBERON:0007284,2.57e-19,64;UBERON:0000073,4.54e-18,54;UBERON:0010371,4.85e-17,73;UBERON:0001049,1.16e-16,52;UBERON:0005068,1.16e-16,52;UBERON:0006241,1.16e-16,52;UBERON:0007135,1.16e-16,52;UBERON:0003056,2.84e-15,49;UBERON:0002020,5.40e-15,34;UBERON:0001016,6.69e-15,75;UBERON:0001017,7.71e-15,73;UBERON:0004121,1.82e-14,95;UBERON:0000924,1.82e-14,95;UBERON:0006601,1.82e-14,95;UBERON:0000955,1.07e-13,47;UBERON:0006238,1.07e-13,47;UBERON:0002616,2.68e-13,46;UBERON:0003080,3.10e-13,40;UBERON:0002780,9.30e-13,39;UBERON:0001890,9.30e-13,39;UBERON:0006240,9.30e-13,39;UBERON:0003528,4.65e-12,29;UBERON:0002791,4.65e-12,29;UBERON:0001893,4.65e-12,29;UBERON:0010314,1.51e-08,92;UBERON:0000956,3.44e-08,21;UBERON:0001869,3.44e-08,21;UBERON:0000203,3.44e-08,21;UBERON:0002021,5.88e-08,10;UBERON:0000411,5.88e-08,10;UBERON:0001950,5.88e-08,10;UBERON:0002619,6.71e-07,17|phase1_expression=27.225304007815,0.348975407639361,1.81999695755814,2.11724947914781,1.00179145989269,8.2260843236826,5.37309073369709,17.9481419583791,8.16574588479667,12.4054198950657,0.34243593645101,0.957265907944037,15.0656642339461,12.9382195580116,12.9912807108108,15.3881203216268,21.6864182219725,9.46386496074713,10.0093536532189,13.1560792057389,17.093701320365,12.0142050953071,11.4927907221132,1.91990907352088,2.2940928106717,0.57423196411502,1.7230479846363,0.861884930743556,0.380046838912748,1.51218077855958,2.21730510655305,12.7006134691926,6.1506478758457,0,6.64358725427932,3.82339684324532,8.77928231928187,0.837063261473815,2.3440060335714,1.0470474879476,0.588231488031014,4.09827290975067,0.971020706062307,0.629484089877886,0.202753862439029,0.367093504323363,0.782391344348039,0,0.219686182734472,0.194429899074283,0.139986421625363,0,10.5703041816374,22.4862264023517,28.9040667262519,0.514518872071894,3.43840127926508,1.54701627683233,59.2787230318621,60.3049716370117,57.0448263155561,0.338844532069132,0,8.99899717281399,7.9109309005358,6.3943210345149,1.49800055259202,1.15265491596466,14.6202353354953,12.8255641415106,15.5640471400023,62.557565584433,47.9284733865001,18.0061474845982,13.5142114135713,22.0612508786405,109.014722189395,71.7602840038755,82.640314891859,56.1835585730626,53.4287838638072,54.174990537903,48.2986588272389,59.6528366633581,62.800079836269,102.236119159363,85.8501235218591,61.5118171223492,5.14938114665652,14.0563101798621,24.0587525622393,3.44169550792555,0.679971333707751,1.61910957491345,1.94932925234301,0.896053774194671,7.5839986871146,0.511290967734173,1.29893002301434,0.70667914902068,26.4785629180159,1.28326477414318,15.2883143823987,0,11.0410430915719,9.88103475352884,10.1104889002957,5.709193985953,8.2860122767095,2.22663208597237,2.94925055502431,5.78484408793068,3.92046345335299,4.52167921657868,5.40908052824242,1.50799909595611,5.93267922562497,5.20557684911682,14.153768831198,2.91180329905337,8.17113618303456,8.24287930329878,3.72783522436244,64.1189945455288,84.8259162594493,3.57639877292028,10.543730956521,6.59893004092748,9.40319680340679,45.9857262972806,27.4500361691176,18.7224984648168,67.6176605547955,90.2675564376067,60.8818970559511,61.6516799657479,2.13862664085664,10.2013715900276,5.05445516867349,9.46988351489133,5.59517904739626,10.1156925950728,14.945156773844,16.2761203262572,19.0502197623718,17.935920839879,23.8002380381711,22.50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| ||
|EntrezGene=70974 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=E0CX81 | |||
|association_with_transcript=0bp_to_ENSMUST00000162108_5end | |||
|description=CAGE_peak_1_at_Pgm2l1_5end | |||
|id=chr7:107376148..107376216,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.52e-12!23;CL:0000337!2.52e-12!23;CL:0000540!3.99e-09!33;CL:0000047!3.99e-09!33;CL:0000031!3.99e-09!33;CL:0000404!3.99e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.48e-12,23;CL:0000337,2.48e-12,23;CL:0000540,4.50e-09,33;CL:0000047,4.50e-09,33;CL:0000031,4.50e-09,33;CL:0000404,4.50e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.86e-17!63;UBERON:0001049!1.52e-16!52;UBERON:0005068!1.52e-16!52;UBERON:0006241!1.52e-16!52;UBERON:0007135!1.52e-16!52;UBERON:0007811!6.71e-16!86;UBERON:0002346!7.23e-16!71;UBERON:0003075!7.23e-16!71;UBERON:0007284!7.23e-16!71;UBERON:0000955!2.09e-15!50;UBERON:0006238!2.09e-15!50;UBERON:0003056!3.48e-15!49;UBERON:0002616!5.38e-15!49;UBERON:0002020!6.82e-15!34;UBERON:0000073!9.21e-15!75;UBERON:0001016!9.21e-15!75;UBERON:0000153!1.03e-14!94;UBERON:0001017!1.06e-14!73;UBERON:0005743!1.06e-14!73;UBERON:0003080!3.79e-13!40;UBERON:0002780!1.14e-12!39;UBERON:0001890!1.14e-12!39;UBERON:0006240!1.14e-12!39;UBERON:0004121!2.87e-12!102;UBERON:0000924!2.87e-12!102;UBERON:0006601!2.87e-12!102;UBERON:0002791!5.78e-12!29;UBERON:0003528!5.78e-12!29;UBERON:0001893!5.78e-12!29;UBERON:0000956!4.19e-08!21;UBERON:0001869!4.19e-08!21;UBERON:0000203!4.19e-08!21;UBERON:0002021!5.94e-08!10;UBERON:0000411!5.94e-08!10;UBERON:0001950!5.94e-08!10;UBERON:0002619!8.16e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.57e-19,64;UBERON:0003075,2.57e-19,64;UBERON:0007284,2.57e-19,64;UBERON:0000073,4.54e-18,54;UBERON:0010371,4.85e-17,73;UBERON:0001049,1.16e-16,52;UBERON:0005068,1.16e-16,52;UBERON:0006241,1.16e-16,52;UBERON:0007135,1.16e-16,52;UBERON:0003056,2.84e-15,49;UBERON:0002020,5.40e-15,34;UBERON:0001016,6.69e-15,75;UBERON:0001017,7.71e-15,73;UBERON:0004121,1.82e-14,95;UBERON:0000924,1.82e-14,95;UBERON:0006601,1.82e-14,95;UBERON:0000955,1.07e-13,47;UBERON:0006238,1.07e-13,47;UBERON:0002616,2.68e-13,46;UBERON:0003080,3.10e-13,40;UBERON:0002780,9.30e-13,39;UBERON:0001890,9.30e-13,39;UBERON:0006240,9.30e-13,39;UBERON:0003528,4.65e-12,29;UBERON:0002791,4.65e-12,29;UBERON:0001893,4.65e-12,29;UBERON:0010314,1.51e-08,92;UBERON:0000956,3.44e-08,21;UBERON:0001869,3.44e-08,21;UBERON:0000203,3.44e-08,21;UBERON:0002021,5.88e-08,10;UBERON:0000411,5.88e-08,10;UBERON:0001950,5.88e-08,10;UBERON:0002619,6.71e-07,17 | |||
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| |||
|short_description=p1@Pgm2l1 | |||
}} |
Revision as of 11:14, 14 September 2013
Short description: | p1@Pgm2l1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pgm2l1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000162108_5end |
EntrezGene: | Pgm2l1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.48e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.48e-12 | 23 |
neuron | 4.50e-09 | 33 |
neuronal stem cell | 4.50e-09 | 33 |
neuroblast | 4.50e-09 | 33 |
electrically signaling cell | 4.50e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.57e-19 | 64 |
neural plate | 2.57e-19 | 64 |
presumptive neural plate | 2.57e-19 | 64 |
regional part of nervous system | 4.54e-18 | 54 |
ecto-epithelium | 4.85e-17 | 73 |
neural tube | 1.16e-16 | 52 |
neural rod | 1.16e-16 | 52 |
future spinal cord | 1.16e-16 | 52 |
neural keel | 1.16e-16 | 52 |
pre-chordal neural plate | 2.84e-15 | 49 |
gray matter | 5.40e-15 | 34 |
nervous system | 6.69e-15 | 75 |
central nervous system | 7.71e-15 | 73 |
ectoderm-derived structure | 1.82e-14 | 95 |
ectoderm | 1.82e-14 | 95 |
presumptive ectoderm | 1.82e-14 | 95 |
brain | 1.07e-13 | 47 |
future brain | 1.07e-13 | 47 |
regional part of brain | 2.68e-13 | 46 |
anterior neural tube | 3.10e-13 | 40 |
regional part of forebrain | 9.30e-13 | 39 |
forebrain | 9.30e-13 | 39 |
future forebrain | 9.30e-13 | 39 |
brain grey matter | 4.65e-12 | 29 |
regional part of telencephalon | 4.65e-12 | 29 |
telencephalon | 4.65e-12 | 29 |
structure with developmental contribution from neural crest | 1.51e-08 | 92 |
cerebral cortex | 3.44e-08 | 21 |
cerebral hemisphere | 3.44e-08 | 21 |
pallium | 3.44e-08 | 21 |
occipital lobe | 5.88e-08 | 10 |
visual cortex | 5.88e-08 | 10 |
neocortex | 5.88e-08 | 10 |
regional part of cerebral cortex | 6.71e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.