FFCP PHASE1:Mm9::chr7:137836100..137836140,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=57752|HGNC=|MCL_coexpression_id=108|UniProt=E9QL08,Q9JJG0|association_with_transcript=30bp_to_ENSMUST00000033141,NM_021314,uc009kak.1,uc009kal.1,uc009kam.1_5end|description=CAGE_peak_4_at_Tacc2_5end|id=chr7:137836100..137836140,+|ontology_enrichment_celltype=CL:0000540!6.10e-13!33;CL:0000047!6.10e-13!33;CL:0000031!6.10e-13!33;CL:0000404!6.10e-13!33;CL:0000393!6.08e-11!39;CL:0000211!6.08e-11!39;CL:0002319!1.05e-09!43;CL:0000221!1.44e-09!44;CL:0000133!1.44e-09!44;CL:0000117!6.00e-09!23;CL:0000337!6.00e-09!23;CL:0000055!6.82e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.68e-13,33;CL:0000047,1.68e-13,33;CL:0000031,1.68e-13,33;CL:0000404,1.68e-13,33;CL:0000393,1.50e-11,39;CL:0000211,1.50e-11,39;CL:0000117,2.59e-09,23;CL:0000337,2.59e-09,23;CL:0002319,4.59e-09,43;CL:0000221,6.11e-09,44;CL:0000133,6.11e-09,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!3.58e-17!102;UBERON:0000924!3.58e-17!102;UBERON:0006601!3.58e-17!102;UBERON:0001017!3.71e-16!73;UBERON:0005743!3.71e-16!73;UBERON:0000073!2.63e-15!75;UBERON:0001016!2.63e-15!75;UBERON:0002346!7.35e-15!71;UBERON:0003075!7.35e-15!71;UBERON:0007284!7.35e-15!71;UBERON:0000153!3.33e-12!94;UBERON:0003056!5.54e-11!49;UBERON:0000033!5.85e-11!63;UBERON:0007811!1.37e-10!86;UBERON:0001049!1.63e-10!52;UBERON:0005068!1.63e-10!52;UBERON:0006241!1.63e-10!52;UBERON:0007135!1.63e-10!52;UBERON:0000955!2.40e-09!50;UBERON:0006238!2.40e-09!50;UBERON:0002616!6.71e-09!49;UBERON:0000468!1.94e-08!333;UBERON:0003080!4.25e-08!40;UBERON:0002780!4.51e-08!39;UBERON:0001890!4.51e-08!39;UBERON:0006240!4.51e-08!39;UBERON:0002020!5.86e-08!34;UBERON:0000922!3.94e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.06e-16,73;UBERON:0004121,9.16e-16,95;UBERON:0000924,9.16e-16,95;UBERON:0006601,9.16e-16,95;UBERON:0001016,9.13e-15,75;UBERON:0002346,2.07e-14,64;UBERON:0003075,2.07e-14,64;UBERON:0007284,2.07e-14,64;UBERON:0010314,6.64e-14,92;UBERON:0010371,3.16e-13,73;UBERON:0003056,6.53e-11,49;UBERON:0000073,2.01e-10,54;UBERON:0001049,2.49e-10,52;UBERON:0005068,2.49e-10,52;UBERON:0006241,2.49e-10,52;UBERON:0007135,2.49e-10,52;UBERON:0000955,4.82e-09,47;UBERON:0006238,4.82e-09,47;UBERON:0002616,1.39e-08,46;UBERON:0003080,4.44e-08,40;UBERON:0002780,4.75e-08,39;UBERON:0001890,4.75e-08,39;UBERON:0006240,4.75e-08,39;UBERON:0002020,4.81e-08,34;UBERON:0000922,9.73e-08,320|phase1_expression=2.88267924788629,0,0,0,0,0,0,0.774739940649458,1.97104211012333,2.80877431586392,0.171217968225505,0.159544317990673,1.54080656938085,2.53519167015092,0,0,0,0,0,0,2.8064285749853,3.47518329203099,1.04479915655574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01434908760924,2.53442328048786,3.12029478674859,13.3006528539167,0.872100625521786,0.219686182734472,0.388859798148567,0.839918529752175,0,0,1.45072428402269,0,3.60163210450326,1.14613375975503,0,14.9714181036102,16.9277113367051,13.3104594736298,3.04960078862219,0.889294796111139,0,0,0.7104801149461,2.69640099466564,6.91592949578798,11.716926190858,13.9056116481641,13.4607975264884,4.85606673486466,5.52171352379034,9.67677313798137,13.6100568845896,18.3843757322004,4.40463523997555,4.21368215681119,1.84327839907492,13.7161739239402,11.2529801630964,9.89735404057844,2.51264699101243,1.12552522006336,2.44477196442896,5.30331453852602,7.97281412474976,11.7431650869939,0.227178579999552,0.982430281388212,1.44932244350839,0,0,0,0,0,0.140444420131752,0,0,0,2.53518155598025,0,0,0,0,0,0,0.79928715803342,0,0.29688427812965,6.93941307064543,6.08930956624282,5.30415643688935,3.16517545160507,3.29248379979973,0.628332956648377,2.47194967734374,0.289198713839823,0,0.808834249737046,0.441683036920787,1.45462575940567,0,10.5401086924157,5.23616767033638,0,0,0,0,3.2953940669061,2.28750301409313,12.6910895633993,3.12883776346098,3.83573185995496,1.24672826735736,4.05603157669394,3.1570202793598,1.24406970610093,0.252722758433675,0.420883711772948,10.6698763229417,10.3455946995063,15.6654052930654,10.5493372485001,8.64063539221864,9.09607414022434,6.74652416830048,3.10444044886819,6.68260778091811,6.61871280587367,6.862093842394,3.28793598641362,7.78532297831674,4.52727816478817,6.79081050146213,3.38358253591438,0,0,0,8.69928244649108,9.38104239924385,7.02242039697958,6.39210786080068,2.95146347621106,5.39934895105824,5.11574678450897,4.56064782379353,3.50296027101508,2.79751744852917,1.97000956894914,1.29710095273369,1.02339991197733,0.658650345873152,0.402619256281115,6.9395683026162,23.873870071994,0,0,7.89166526980366,6.27039014023184,3.47942145569652,2.62188582010345,2.00140239460383,1.90225626112559,0,0.823494773620054,1.00534083520108,0.596869416123452,0.19496408711912,0,0,0,6.44870863240478,5.1411830674378,3.38123207019241,5.09128319613286,4.46090720485539,3.29638353484497,1.89709611372772,0.885660887877613,0.470996183524124,0.616985819609003,0,2.50267658574141,2.75182593158484,1.57403478669398,0.405720242777006,0.482354319504834,0.763877555344259,0.863088412352432,0.648540907100142,0.2745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| ||
|EntrezGene=57752 | |||
|HGNC= | |||
|MCL_coexpression_id=108 | |||
|UniProt=E9QL08,Q9JJG0 | |||
|association_with_transcript=30bp_to_ENSMUST00000033141,NM_021314,uc009kak.1,uc009kal.1,uc009kam.1_5end | |||
|description=CAGE_peak_4_at_Tacc2_5end | |||
|id=chr7:137836100..137836140,+ | |||
|ontology_enrichment_celltype=CL:0000540!6.10e-13!33;CL:0000047!6.10e-13!33;CL:0000031!6.10e-13!33;CL:0000404!6.10e-13!33;CL:0000393!6.08e-11!39;CL:0000211!6.08e-11!39;CL:0002319!1.05e-09!43;CL:0000221!1.44e-09!44;CL:0000133!1.44e-09!44;CL:0000117!6.00e-09!23;CL:0000337!6.00e-09!23;CL:0000055!6.82e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.68e-13,33;CL:0000047,1.68e-13,33;CL:0000031,1.68e-13,33;CL:0000404,1.68e-13,33;CL:0000393,1.50e-11,39;CL:0000211,1.50e-11,39;CL:0000117,2.59e-09,23;CL:0000337,2.59e-09,23;CL:0002319,4.59e-09,43;CL:0000221,6.11e-09,44;CL:0000133,6.11e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.58e-17!102;UBERON:0000924!3.58e-17!102;UBERON:0006601!3.58e-17!102;UBERON:0001017!3.71e-16!73;UBERON:0005743!3.71e-16!73;UBERON:0000073!2.63e-15!75;UBERON:0001016!2.63e-15!75;UBERON:0002346!7.35e-15!71;UBERON:0003075!7.35e-15!71;UBERON:0007284!7.35e-15!71;UBERON:0000153!3.33e-12!94;UBERON:0003056!5.54e-11!49;UBERON:0000033!5.85e-11!63;UBERON:0007811!1.37e-10!86;UBERON:0001049!1.63e-10!52;UBERON:0005068!1.63e-10!52;UBERON:0006241!1.63e-10!52;UBERON:0007135!1.63e-10!52;UBERON:0000955!2.40e-09!50;UBERON:0006238!2.40e-09!50;UBERON:0002616!6.71e-09!49;UBERON:0000468!1.94e-08!333;UBERON:0003080!4.25e-08!40;UBERON:0002780!4.51e-08!39;UBERON:0001890!4.51e-08!39;UBERON:0006240!4.51e-08!39;UBERON:0002020!5.86e-08!34;UBERON:0000922!3.94e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.06e-16,73;UBERON:0004121,9.16e-16,95;UBERON:0000924,9.16e-16,95;UBERON:0006601,9.16e-16,95;UBERON:0001016,9.13e-15,75;UBERON:0002346,2.07e-14,64;UBERON:0003075,2.07e-14,64;UBERON:0007284,2.07e-14,64;UBERON:0010314,6.64e-14,92;UBERON:0010371,3.16e-13,73;UBERON:0003056,6.53e-11,49;UBERON:0000073,2.01e-10,54;UBERON:0001049,2.49e-10,52;UBERON:0005068,2.49e-10,52;UBERON:0006241,2.49e-10,52;UBERON:0007135,2.49e-10,52;UBERON:0000955,4.82e-09,47;UBERON:0006238,4.82e-09,47;UBERON:0002616,1.39e-08,46;UBERON:0003080,4.44e-08,40;UBERON:0002780,4.75e-08,39;UBERON:0001890,4.75e-08,39;UBERON:0006240,4.75e-08,39;UBERON:0002020,4.81e-08,34;UBERON:0000922,9.73e-08,320 | |||
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| |||
|short_description=p4@Tacc2 | |||
}} |
Revision as of 12:03, 14 September 2013
Short description: | p4@Tacc2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Tacc2_5end |
Coexpression cluster: | MCL_coexpression_mm9:108 |
Association with transcript: | 30bp_to_ENSMUST00000033141, NM_021314, uc009kak.1, uc009kal.1, uc009kam.1_5end |
EntrezGene: | Tacc2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.68e-13 | 33 |
neuronal stem cell | 1.68e-13 | 33 |
neuroblast | 1.68e-13 | 33 |
electrically signaling cell | 1.68e-13 | 33 |
electrically responsive cell | 1.50e-11 | 39 |
electrically active cell | 1.50e-11 | 39 |
CNS neuron (sensu Vertebrata) | 2.59e-09 | 23 |
neuroblast (sensu Vertebrata) | 2.59e-09 | 23 |
neural cell | 4.59e-09 | 43 |
ectodermal cell | 6.11e-09 | 44 |
neurectodermal cell | 6.11e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.06e-16 | 73 |
ectoderm-derived structure | 9.16e-16 | 95 |
ectoderm | 9.16e-16 | 95 |
presumptive ectoderm | 9.16e-16 | 95 |
nervous system | 9.13e-15 | 75 |
neurectoderm | 2.07e-14 | 64 |
neural plate | 2.07e-14 | 64 |
presumptive neural plate | 2.07e-14 | 64 |
structure with developmental contribution from neural crest | 6.64e-14 | 92 |
ecto-epithelium | 3.16e-13 | 73 |
pre-chordal neural plate | 6.53e-11 | 49 |
regional part of nervous system | 2.01e-10 | 54 |
neural tube | 2.49e-10 | 52 |
neural rod | 2.49e-10 | 52 |
future spinal cord | 2.49e-10 | 52 |
neural keel | 2.49e-10 | 52 |
brain | 4.82e-09 | 47 |
future brain | 4.82e-09 | 47 |
regional part of brain | 1.39e-08 | 46 |
anterior neural tube | 4.44e-08 | 40 |
regional part of forebrain | 4.75e-08 | 39 |
forebrain | 4.75e-08 | 39 |
future forebrain | 4.75e-08 | 39 |
gray matter | 4.81e-08 | 34 |
embryo | 9.73e-08 | 320 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.