FFCP PHASE1:Mm9::chr7:20093670..20093726,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=232946|HGNC=|MCL_coexpression_id=1232|UniProt=Q5U5M8|association_with_transcript=0bp_to_ENSMUST00000077408,NM_177692,uc009fma.1_5end|description=CAGE_peak_1_at_Bloc1s3_5end|id=chr7:20093670..20093726,-|ontology_enrichment_celltype=CL:0000055!7.52e-13!50;CL:0002321!1.46e-12!70;CL:0000220!1.46e-12!70;CL:0002319!6.42e-11!43;CL:0000221!8.59e-11!44;CL:0000133!8.59e-11!44;CL:0002371!1.50e-10!118;CL:0000144!2.85e-09!121;CL:0000012!2.85e-09!121;CL:0000548!3.35e-09!115;CL:0000004!3.35e-09!115;CL:0000255!3.35e-09!115;CL:0000393!1.47e-08!39;CL:0000211!1.47e-08!39;CL:0000117!2.50e-08!23;CL:0000337!2.50e-08!23;CL:0000540!8.29e-07!33;CL:0000047!8.29e-07!33;CL:0000031!8.29e-07!33;CL:0000404!8.29e-07!33|ontology_enrichment_celltype_v019_2=CL:0002321,1.46e-12,70;CL:0002319,6.42e-11,43;CL:0000221,8.59e-11,44;CL:0000133,8.59e-11,44;CL:0000393,1.47e-08,39;CL:0000211,1.47e-08,39;CL:0000117,2.50e-08,23;CL:0000337,2.50e-08,23;CL:0000540,8.29e-07,33;CL:0000047,8.29e-07,33;CL:0000031,8.29e-07,33;CL:0000404,8.29e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.80e-14!75;UBERON:0001016!3.80e-14!75;UBERON:0001017!9.05e-14!73;UBERON:0005743!9.05e-14!73;UBERON:0004121!1.93e-13!102;UBERON:0000924!1.93e-13!102;UBERON:0006601!1.93e-13!102;UBERON:0000955!1.14e-10!50;UBERON:0006238!1.14e-10!50;UBERON:0001049!1.99e-10!52;UBERON:0005068!1.99e-10!52;UBERON:0006241!1.99e-10!52;UBERON:0007135!1.99e-10!52;UBERON:0002616!1.99e-10!49;UBERON:0002020!1.73e-09!34;UBERON:0000033!6.01e-09!63;UBERON:0002791!6.95e-09!29;UBERON:0003528!6.95e-09!29;UBERON:0001893!6.95e-09!29;UBERON:0002346!7.31e-09!71;UBERON:0003075!7.31e-09!71;UBERON:0007284!7.31e-09!71;UBERON:0003080!9.73e-08!40;UBERON:0002780!1.93e-07!39;UBERON:0001890!1.93e-07!39;UBERON:0006240!1.93e-07!39;UBERON:0000064!3.67e-07!99|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.80e-14,75;UBERON:0001017,9.05e-14,73;UBERON:0004121,1.25e-12,95;UBERON:0000924,1.25e-12,95;UBERON:0006601,1.25e-12,95;UBERON:0000073,3.57e-11,54;UBERON:0001049,1.99e-10,52;UBERON:0005068,1.99e-10,52;UBERON:0006241,1.99e-10,52;UBERON:0007135,1.99e-10,52;UBERON:0000955,9.88e-10,47;UBERON:0006238,9.88e-10,47;UBERON:0002616,1.70e-09,46;UBERON:0002020,1.73e-09,34;UBERON:0003528,6.95e-09,29;UBERON:0002791,6.95e-09,29;UBERON:0001893,6.95e-09,29;UBERON:0002346,3.23e-08,64;UBERON:0003075,3.23e-08,64;UBERON:0007284,3.23e-08,64;UBERON:0010371,6.39e-08,73;UBERON:0011216,8.93e-08,194;UBERON:0003080,9.73e-08,40;UBERON:0002780,1.93e-07,39;UBERON:0001890,1.93e-07,39;UBERON:0006240,1.93e-07,39;UBERON:0000923,4.59e-07,291;UBERON:0010316,4.59e-07,291;UBERON:0005291,4.59e-07,291;UBERON:0006598,4.59e-07,291;UBERON:0010317,4.59e-07,291;UBERON:0002532,4.59e-07,291|phase1_expression=7.68714466103011,25.126229350034,30.0299497997094,25.7094579610806,34.0609096363516,13.0945832091274,11.9142446703718,11.4919757863003,2.39340827657833,3.7450324211519,6.33506482434368,6.78063351460359,9.41604014621631,7.60557501045277,8.66085380720723,6.2767332890846,6.99561878128147,8.83294063003066,8.63820931716154,8.91218268775863,7.82398269389842,5.56029326724958,4.70159620450084,13.9193407830264,20.188016733911,18.3754228516806,20.6765758156356,18.0995835456147,28.1234660795433,20.1624103807945,15.5211357458713,5.71527606113668,12.3012957516914,15.8481681015439,5.48818077527422,5.81821258754723,5.51257261908397,41.8531630736908,30.4720784364282,28.2702821745851,49.4114449946052,50.545365886925,50.9785870682711,12.0860945256554,13.1790010585369,12.4811791469943,33.6428278069657,15.0437357902508,22.8473630043851,16.7209713203884,13.9986421625363,14.3752564364972,6.71130424230945,2.90144856804538,2.35265659399725,11.3194151855817,11.4613375975503,18.0485232297105,12.1389876515759,14.8117474196169,13.9442908771359,16.9422266034566,18.6751907183339,44.0950861467885,51.4210508534827,46.1812074714965,27.8628102782116,34.1954291736184,13.1685807631767,14.3106294631592,14.7227472945967,7.7125765789027,12.1477697523387,11.5141351262057,11.5973019932066,16.5459381589804,12.1127469099328,12.896421146604,13.0565553267807,15.1669230889723,13.7231465403614,10.939180781692,15.0758819460746,16.3201156909187,15.5854212732346,12.9636577608414,7.83044244395066,11.5567656411686,11.0560242266449,9.82430281388212,6.37701875143691,8.60423876981386,7.47968467078526,12.4131734076698,9.74664626171504,8.51251085484938,9.83110940922263,7.32850387085648,5.19572009205738,10.2468476607999,7.60554466794075,6.41632387071589,5.09610479413291,0,11.6905162146056,9.88103475352884,6.57181778519218,6.8510327831436,6.47344709117929,11.7269289861212,6.7659277438793,7.61163695780353,9.22461989024234,8.59119051149949,8.58397562090645,14.2003248202533,11.6181634835156,4.04878199375753,17.6922110389975,4.20593809863264,5.52103796150984,7.27312879702833,9.31958806090611,10.8328894894272,9.84399522023239,12.517395705221,3.47463861067169,4.19931911695385,6.4805815807263,12.8819949888148,9.60751265919116,7.79056983099759,13.732121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| ||
|EntrezGene=232946 | |||
|HGNC= | |||
|MCL_coexpression_id=1232 | |||
|UniProt=Q5U5M8 | |||
|association_with_transcript=0bp_to_ENSMUST00000077408,NM_177692,uc009fma.1_5end | |||
|description=CAGE_peak_1_at_Bloc1s3_5end | |||
|id=chr7:20093670..20093726,- | |||
|ontology_enrichment_celltype=CL:0000055!7.52e-13!50;CL:0002321!1.46e-12!70;CL:0000220!1.46e-12!70;CL:0002319!6.42e-11!43;CL:0000221!8.59e-11!44;CL:0000133!8.59e-11!44;CL:0002371!1.50e-10!118;CL:0000144!2.85e-09!121;CL:0000012!2.85e-09!121;CL:0000548!3.35e-09!115;CL:0000004!3.35e-09!115;CL:0000255!3.35e-09!115;CL:0000393!1.47e-08!39;CL:0000211!1.47e-08!39;CL:0000117!2.50e-08!23;CL:0000337!2.50e-08!23;CL:0000540!8.29e-07!33;CL:0000047!8.29e-07!33;CL:0000031!8.29e-07!33;CL:0000404!8.29e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.46e-12,70;CL:0002319,6.42e-11,43;CL:0000221,8.59e-11,44;CL:0000133,8.59e-11,44;CL:0000393,1.47e-08,39;CL:0000211,1.47e-08,39;CL:0000117,2.50e-08,23;CL:0000337,2.50e-08,23;CL:0000540,8.29e-07,33;CL:0000047,8.29e-07,33;CL:0000031,8.29e-07,33;CL:0000404,8.29e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.80e-14!75;UBERON:0001016!3.80e-14!75;UBERON:0001017!9.05e-14!73;UBERON:0005743!9.05e-14!73;UBERON:0004121!1.93e-13!102;UBERON:0000924!1.93e-13!102;UBERON:0006601!1.93e-13!102;UBERON:0000955!1.14e-10!50;UBERON:0006238!1.14e-10!50;UBERON:0001049!1.99e-10!52;UBERON:0005068!1.99e-10!52;UBERON:0006241!1.99e-10!52;UBERON:0007135!1.99e-10!52;UBERON:0002616!1.99e-10!49;UBERON:0002020!1.73e-09!34;UBERON:0000033!6.01e-09!63;UBERON:0002791!6.95e-09!29;UBERON:0003528!6.95e-09!29;UBERON:0001893!6.95e-09!29;UBERON:0002346!7.31e-09!71;UBERON:0003075!7.31e-09!71;UBERON:0007284!7.31e-09!71;UBERON:0003080!9.73e-08!40;UBERON:0002780!1.93e-07!39;UBERON:0001890!1.93e-07!39;UBERON:0006240!1.93e-07!39;UBERON:0000064!3.67e-07!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.80e-14,75;UBERON:0001017,9.05e-14,73;UBERON:0004121,1.25e-12,95;UBERON:0000924,1.25e-12,95;UBERON:0006601,1.25e-12,95;UBERON:0000073,3.57e-11,54;UBERON:0001049,1.99e-10,52;UBERON:0005068,1.99e-10,52;UBERON:0006241,1.99e-10,52;UBERON:0007135,1.99e-10,52;UBERON:0000955,9.88e-10,47;UBERON:0006238,9.88e-10,47;UBERON:0002616,1.70e-09,46;UBERON:0002020,1.73e-09,34;UBERON:0003528,6.95e-09,29;UBERON:0002791,6.95e-09,29;UBERON:0001893,6.95e-09,29;UBERON:0002346,3.23e-08,64;UBERON:0003075,3.23e-08,64;UBERON:0007284,3.23e-08,64;UBERON:0010371,6.39e-08,73;UBERON:0011216,8.93e-08,194;UBERON:0003080,9.73e-08,40;UBERON:0002780,1.93e-07,39;UBERON:0001890,1.93e-07,39;UBERON:0006240,1.93e-07,39;UBERON:0000923,4.59e-07,291;UBERON:0010316,4.59e-07,291;UBERON:0005291,4.59e-07,291;UBERON:0006598,4.59e-07,291;UBERON:0010317,4.59e-07,291;UBERON:0002532,4.59e-07,291 | |||
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| |||
|short_description=p1@Bloc1s3 | |||
}} |
Revision as of 12:42, 14 September 2013
Short description: | p1@Bloc1s3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Bloc1s3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1232 |
Association with transcript: | 0bp_to_ENSMUST00000077408, NM_177692, uc009fma.1_5end |
EntrezGene: | Bloc1s3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.46e-12 | 70 |
neural cell | 6.42e-11 | 43 |
ectodermal cell | 8.59e-11 | 44 |
neurectodermal cell | 8.59e-11 | 44 |
electrically responsive cell | 1.47e-08 | 39 |
electrically active cell | 1.47e-08 | 39 |
CNS neuron (sensu Vertebrata) | 2.50e-08 | 23 |
neuroblast (sensu Vertebrata) | 2.50e-08 | 23 |
neuron | 8.29e-07 | 33 |
neuronal stem cell | 8.29e-07 | 33 |
neuroblast | 8.29e-07 | 33 |
electrically signaling cell | 8.29e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.80e-14 | 75 |
central nervous system | 9.05e-14 | 73 |
ectoderm-derived structure | 1.25e-12 | 95 |
ectoderm | 1.25e-12 | 95 |
presumptive ectoderm | 1.25e-12 | 95 |
regional part of nervous system | 3.57e-11 | 54 |
neural tube | 1.99e-10 | 52 |
neural rod | 1.99e-10 | 52 |
future spinal cord | 1.99e-10 | 52 |
neural keel | 1.99e-10 | 52 |
brain | 9.88e-10 | 47 |
future brain | 9.88e-10 | 47 |
regional part of brain | 1.70e-09 | 46 |
gray matter | 1.73e-09 | 34 |
brain grey matter | 6.95e-09 | 29 |
regional part of telencephalon | 6.95e-09 | 29 |
telencephalon | 6.95e-09 | 29 |
neurectoderm | 3.23e-08 | 64 |
neural plate | 3.23e-08 | 64 |
presumptive neural plate | 3.23e-08 | 64 |
ecto-epithelium | 6.39e-08 | 73 |
organ system subdivision | 8.93e-08 | 194 |
anterior neural tube | 9.73e-08 | 40 |
regional part of forebrain | 1.93e-07 | 39 |
forebrain | 1.93e-07 | 39 |
future forebrain | 1.93e-07 | 39 |
germ layer | 4.59e-07 | 291 |
germ layer / neural crest | 4.59e-07 | 291 |
embryonic tissue | 4.59e-07 | 291 |
presumptive structure | 4.59e-07 | 291 |
germ layer / neural crest derived structure | 4.59e-07 | 291 |
epiblast (generic) | 4.59e-07 | 291 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.