FFCP PHASE1:Mm9::chr8:81923366..81923371,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=17125|HGNC=|UniProt=P70340,Q0VER3|association_with_transcript=0bp_to_NM_008539,uc009mip.1,uc009miq.1,uc012ggl.1_5end|description=CAGE_peak_5_at_Smad1_5end|id=chr8:81923366..81923371,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000117,8.17e-09,23;CL:0000337,8.17e-09,23;CL:0002609,3.28e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!5.17e-08!52;UBERON:0005068!5.17e-08!52;UBERON:0006241!5.17e-08!52;UBERON:0007135!5.17e-08!52;UBERON:0002346!7.91e-08!71;UBERON:0003075!7.91e-08!71;UBERON:0007284!7.91e-08!71;UBERON:0003056!1.52e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0003056,2.97e-07,49;UBERON:0000369,3.00e-07,5;UBERON:0002435,3.00e-07,5;UBERON:0000204,3.00e-07,5;UBERON:0010082,3.00e-07,5;UBERON:0002346,3.31e-07,64;UBERON:0003075,3.31e-07,64;UBERON:0007284,3.31e-07,64;UBERON:0002020,5.07e-07,34;UBERON:0001049,6.17e-07,52;UBERON:0005068,6.17e-07,52;UBERON:0006241,6.17e-07,52;UBERON:0007135,6.17e-07,52;UBERON:0004121,9.18e-07,95;UBERON:0000924,9.18e-07,95;UBERON:0006601,9.18e-07,95|phase1_expression=0.640595388419176,0,0.454999239389536,1.51232105653415,0.500895729946347,0.33575854382378,0.233612640595526,0.129123323441576,0.422366166455,0.936258105287974,0.34243593645101,0.319088635981346,0.856003649656029,0.262261207256992,0,0,0,0.473193248037357,0.137114433605739,0,0.255129870453209,0,0,0.159992422793407,0,0.57423196411502,0.86152399231815,0,0.190023419456374,0.504060259519861,0.443461021310609,0,0,0,0.288851619751275,0.166234645358492,0,0.418531630736908,0.7813353445238,0.523523743973798,0,0,0.485510353031154,0.755380907853464,0.304130793658544,0,0.782391344348039,0.218025156380447,0,0.972149495371417,0.699932108126813,0,0,0,0,0.771778308107841,0.85960031981627,0,3.84401275633236,2.11596391708813,0.633831403506179,0.338844532069132,0.889294796111139,0,0.988866362566974,0.7104801149461,0.299600110518405,1.53687322128622,1.97010263386108,2.16009501330705,1.47227472945967,0.571301968807607,0.662605622854841,1.22490799214954,1.24599112323707,1.83843757322004,0,0.383062014255563,0.307213066512487,1.84640802822271,2.65314166446988,1.56274011167028,0,1.12552522006336,0.763991238884051,1.76777151284201,1.28134512719193,1.1183966749518,0.454357159999104,0.377857800533928,0.289864488701678,0,0.679971333707751,0,0,0.448026887097336,0.421333260395256,0,0.779358013808606,0.35333957451034,0.14084341977668,0,0,0,0.432982082022428,0.253359865475099,1.51657333504435,0.91347103775248,1.03575153458869,0.593768556259299,0.867426633830679,0.304465478312141,0.922461989024234,0.452167921657868,0.705532242814229,0.753999547978053,1.48316980640624,0.578397427679647,0,0.808834249737046,0.662524555381181,0,3.72783522436244,1.46390398505774,1.04723353406728,0.510914110417183,0.239630249011841,1.79970819298022,0.381210681219194,0.748953197024114,3.66000482254901,1.63350657746724,1.04294592115366,1.02286182932132,1.24672826735736,0.648965052271031,0.712875546952214,0.373220911830279,0.505445516867349,0.210441855886474,0.650602214813519,1.60931473103431,1.26043490863744,0.30140963567143,0.680364991513279,1.7935920839879,1.49922759295566,0.776110112217047,0.862271971731369,0.945530400839096,0.703804496655795,0.876782929710299,0.834141747676794,1.0447564995665,0.411564272815887,0.59710280045548,0.702213187313235,0.257347907114715,0,0.621377317606506,0.469052119962192,0.900310307305074,0.946978942340841,0.196764231747404,0.617068451549513,0,1.07309360559848,0.700592054203017,0.658239399653922,0.985004784474571,0.56748166682099,0.292399974850665,0.658650345873152,0.536825675041487,0,2.16099685996497,0.330418782983798,0.793351699990633,1.2797295032114,0.464473343720877,1.41754207454303,0.403367049246685,1.55664630691409,0.760902504450237,1.42358718463353,0.494096864172033,0.502670417600539,0.397912944082302,0,0,0.648414149624083,0.995706366271836,0.189667900953082,0.342745537829186,2.25415471346161,0.610953983535943,0.969762435838129,1.54298803758701,0.758838445491087,0,0.156998727841375,0.370191491765402,0.592905254174298,0.500535317148282,0.589676985339609,0,0.608580364165509,0.241177159752417,0,0,0.486405680325106,0,0,0,0,0.505157755894224,0,0,0.739012760666419,0.757965647081939,0.814824882210129,1.18821560042632,0.234690248288502,1.00503754465089,0.952174563544055,1.36593553500459,0.788175720530955,0.221464689648775,1.2756381492599,0.983179888294428,0.518054945597687,0.144649058581512,0,0,0,0.827810238914197,0.642202359951168,0.586058432961016,0.327869890753351,0.757412781613119,0.315508219416257,0,0.430846795465598,0.238968797952552,1.55959071857676,0,0.404810701674894,0.292255857911312,0,0.642642632843614,0.709700426041343,1.06839362200353,1.14020871547503,1.31976098378028,0,0.971122544619926,0.302323556964751,0.565815239267694,0.885905678642318,0.307435147943927,0.258428293168221,1.09060118843252,0.356497378384721,0,0,0,1.02131881726136,0.900305470156551,1.03486947026204,0.857348140126369,0.709360934569094,1.07021290561242,0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| ||
|EntrezGene=17125 | |||
|HGNC= | |||
|UniProt=P70340,Q0VER3 | |||
|association_with_transcript=0bp_to_NM_008539,uc009mip.1,uc009miq.1,uc012ggl.1_5end | |||
|description=CAGE_peak_5_at_Smad1_5end | |||
|id=chr8:81923366..81923371,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.17e-09,23;CL:0000337,8.17e-09,23;CL:0002609,3.28e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.17e-08!52;UBERON:0005068!5.17e-08!52;UBERON:0006241!5.17e-08!52;UBERON:0007135!5.17e-08!52;UBERON:0002346!7.91e-08!71;UBERON:0003075!7.91e-08!71;UBERON:0007284!7.91e-08!71;UBERON:0003056!1.52e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,2.97e-07,49;UBERON:0000369,3.00e-07,5;UBERON:0002435,3.00e-07,5;UBERON:0000204,3.00e-07,5;UBERON:0010082,3.00e-07,5;UBERON:0002346,3.31e-07,64;UBERON:0003075,3.31e-07,64;UBERON:0007284,3.31e-07,64;UBERON:0002020,5.07e-07,34;UBERON:0001049,6.17e-07,52;UBERON:0005068,6.17e-07,52;UBERON:0006241,6.17e-07,52;UBERON:0007135,6.17e-07,52;UBERON:0004121,9.18e-07,95;UBERON:0000924,9.18e-07,95;UBERON:0006601,9.18e-07,95 | |||
|phase1_expression=0.640595388419176,0,0.454999239389536,1.51232105653415,0.500895729946347,0.33575854382378,0.233612640595526,0.129123323441576,0.422366166455,0.936258105287974,0.34243593645101,0.319088635981346,0.856003649656029,0.262261207256992,0,0,0,0.473193248037357,0.137114433605739,0,0.255129870453209,0,0,0.159992422793407,0,0.57423196411502,0.86152399231815,0,0.190023419456374,0.504060259519861,0.443461021310609,0,0,0,0.288851619751275,0.166234645358492,0,0.418531630736908,0.7813353445238,0.523523743973798,0,0,0.485510353031154,0.755380907853464,0.304130793658544,0,0.782391344348039,0.218025156380447,0,0.972149495371417,0.699932108126813,0,0,0,0,0.771778308107841,0.85960031981627,0,3.84401275633236,2.11596391708813,0.633831403506179,0.338844532069132,0.889294796111139,0,0.988866362566974,0.7104801149461,0.299600110518405,1.53687322128622,1.97010263386108,2.16009501330705,1.47227472945967,0.571301968807607,0.662605622854841,1.22490799214954,1.24599112323707,1.83843757322004,0,0.383062014255563,0.307213066512487,1.84640802822271,2.65314166446988,1.56274011167028,0,1.12552522006336,0.763991238884051,1.76777151284201,1.28134512719193,1.1183966749518,0.454357159999104,0.377857800533928,0.289864488701678,0,0.679971333707751,0,0,0.448026887097336,0.421333260395256,0,0.779358013808606,0.35333957451034,0.14084341977668,0,0,0,0.432982082022428,0.253359865475099,1.51657333504435,0.91347103775248,1.03575153458869,0.593768556259299,0.867426633830679,0.304465478312141,0.922461989024234,0.452167921657868,0.705532242814229,0.753999547978053,1.48316980640624,0.578397427679647,0,0.808834249737046,0.662524555381181,0,3.72783522436244,1.46390398505774,1.04723353406728,0.510914110417183,0.239630249011841,1.79970819298022,0.381210681219194,0.748953197024114,3.66000482254901,1.63350657746724,1.04294592115366,1.02286182932132,1.24672826735736,0.648965052271031,0.712875546952214,0.373220911830279,0.505445516867349,0.210441855886474,0.650602214813519,1.60931473103431,1.26043490863744,0.30140963567143,0.680364991513279,1.7935920839879,1.49922759295566,0.776110112217047,0.862271971731369,0.945530400839096,0.703804496655795,0.876782929710299,0.834141747676794,1.0447564995665,0.411564272815887,0.59710280045548,0.702213187313235,0.257347907114715,0,0.621377317606506,0.469052119962192,0.900310307305074,0.946978942340841,0.196764231747404,0.617068451549513,0,1.07309360559848,0.700592054203017,0.658239399653922,0.985004784474571,0.56748166682099,0.292399974850665,0.658650345873152,0.536825675041487,0,2.16099685996497,0.330418782983798,0.793351699990633,1.2797295032114,0.464473343720877,1.41754207454303,0.403367049246685,1.55664630691409,0.760902504450237,1.42358718463353,0.494096864172033,0.502670417600539,0.397912944082302,0,0,0.648414149624083,0.995706366271836,0.189667900953082,0.342745537829186,2.25415471346161,0.610953983535943,0.969762435838129,1.54298803758701,0.758838445491087,0,0.156998727841375,0.370191491765402,0.592905254174298,0.500535317148282,0.589676985339609,0,0.608580364165509,0.241177159752417,0,0,0.486405680325106,0,0,0,0,0.505157755894224,0,0,0.739012760666419,0.757965647081939,0.814824882210129,1.18821560042632,0.234690248288502,1.00503754465089,0.952174563544055,1.36593553500459,0.788175720530955,0.221464689648775,1.2756381492599,0.983179888294428,0.518054945597687,0.144649058581512,0,0,0,0.827810238914197,0.642202359951168,0.586058432961016,0.327869890753351,0.757412781613119,0.315508219416257,0,0.430846795465598,0.238968797952552,1.55959071857676,0,0.404810701674894,0.292255857911312,0,0.642642632843614,0.709700426041343,1.06839362200353,1.14020871547503,1.31976098378028,0,0.971122544619926,0.302323556964751,0.565815239267694,0.885905678642318,0.307435147943927,0.258428293168221,1.09060118843252,0.356497378384721,0,0,0,1.02131881726136,0.900305470156551,1.03486947026204,0.857348140126369,0.709360934569094,1.07021290561242,0.822745103010605,1.2178597964584,0.704015124191131,0.63549621259146,0.220528398054962,0.65954501176592,1.29171541356724,0.72375509913787,0.477489376012546,1.47726809770555,0.291480836629851,0.927126510052548,0.341741761595705,0.412773735926445,0.370389054739423,0.188368457004691,0,0,0.339956859987711,0.559805809294632,0.276399947608848,0,0.949007980743406,1.01659733563424,0.540026704109006,1.25452977608681,0,0.269728692769641,0.661227645802687,0.26175594198403,0.388844919875379,1.24267862617385,0,0.299033092087958,0.496375471371293,0.583353565032143,1.29159823477731,0.506868376472335,0.352071715937262,1.0416350787516,0.524296722128554,0.241584120826006,0.288030006257865,0.316011120628178,0,0.308132871494482,0.25984164595559,0.358053391334963,0.79472541912506,0.120195449519969,0.590758108698309,1.00966449948148,0.304827226619999,1.10908803650525,0.292373642219257,0.962118416403295,0.233753804363138,0.680191150845634,0,0.269141569828427,0,0.579568782096571,0.187682475451182,1.64836461840539,1.2862102744744,1.00314420807073,1.12950368523413,0.460325236507177,0,0.859265911718438,0.68508251977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| |||
|short_description=p5@Smad1 | |||
}} | |||
Revision as of 16:08, 14 September 2013
| Short description: | p5@Smad1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_5_at_Smad1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_NM_008539, uc009mip.1, uc009miq.1, uc012ggl.1_5end |
| EntrezGene: | Smad1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 8.17e-09 | 23 |
| neuroblast (sensu Vertebrata) | 8.17e-09 | 23 |
| neuron of cerebral cortex | 3.28e-07 | 6 |
| Ontology term | p-value | n |
|---|---|---|
| pre-chordal neural plate | 2.97e-07 | 49 |
| corpus striatum | 3.00e-07 | 5 |
| striatum | 3.00e-07 | 5 |
| ventral part of telencephalon | 3.00e-07 | 5 |
| future corpus striatum | 3.00e-07 | 5 |
| neurectoderm | 3.31e-07 | 64 |
| neural plate | 3.31e-07 | 64 |
| presumptive neural plate | 3.31e-07 | 64 |
| gray matter | 5.07e-07 | 34 |
| neural tube | 6.17e-07 | 52 |
| neural rod | 6.17e-07 | 52 |
| future spinal cord | 6.17e-07 | 52 |
| neural keel | 6.17e-07 | 52 |
| ectoderm-derived structure | 9.18e-07 | 95 |
| ectoderm | 9.18e-07 | 95 |
| presumptive ectoderm | 9.18e-07 | 95 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
