Personal tools

FF:10469-106I1: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007883
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001052,UBERON:0000160,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409,UBERON:0004907
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001052,UBERON:0000160,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409,UBERON:0004907
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
Line 41: Line 42:
|is_a=EFO:0002091;;FF:0000210;;FF:0101532
|is_a=EFO:0002091;;FF:0000210;;FF:0101532
|is_obsolete=
|is_obsolete=
|library_ids=CNhs11255
|name=rectal cancer cell line:TT1TKB
|name=rectal cancer cell line:TT1TKB
|namespace=FANTOM5
|namespace=FANTOM5
Line 85: Line 87:
|top_motifs=HOX{A6,A7,B6,B7}:2.84173573174;ZEB1:2.11286707943;VSX1,2:2.10068548197;SNAI1..3:2.09699763821;FOXQ1:1.67244578191;PDX1:1.4242782586;HNF4A_NR2F1,2:1.36349017199;LEF1_TCF7_TCF7L1,2:1.33858267847;HNF1A:1.32421891781;FOXD3:1.32142982413;SP1:1.1940150962;bHLH_family:1.17452177804;FOXN1:1.17068450903;RORA:1.15765880961;ATF4:1.11210506202;ZNF148:1.10509179049;XCPE1{core}:0.899427951448;TEAD1:0.844657031166;NFY{A,B,C}:0.837407636142;TLX2:0.814904540538;ATF6:0.78853776275;RBPJ:0.781040300481;ONECUT1,2:0.741142978917;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.64478787862;TEF:0.637953306418;TFDP1:0.626828335868;MYOD1:0.60020284128;HLF:0.583886830623;POU2F1..3:0.567543294204;PAX8:0.557155555241;MYB:0.543924890402;SREBF1,2:0.542387920761;TBP:0.535005396099;MED-1{core}:0.510507935673;POU6F1:0.507830537486;FOX{F1,F2,J1}:0.505940901066;FOXM1:0.483177265363;PITX1..3:0.442525851013;E2F1..5:0.440336827913;TFAP2{A,C}:0.438547503373;LMO2:0.433993830932;ATF5_CREB3:0.427498757791;ELK1,4_GABP{A,B1}:0.404592292726;SOX17:0.386737908275;CRX:0.38371066397;CDX1,2,4:0.368804420226;HIF1A:0.365875147403;EN1,2:0.323642736655;GATA6:0.307722993304;MTF1:0.301686172891;FOX{D1,D2}:0.300867770242;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.293646852501;IRF7:0.290404625004;FOS_FOS{B,L1}_JUN{B,D}:0.288614569095;HOXA9_MEIS1:0.287555304899;NANOG:0.255797349901;AHR_ARNT_ARNT2:0.252730004214;NKX2-1,4:0.246710159278;TBX4,5:0.228469676999;RFX2..5_RFXANK_RFXAP:0.226591400718;POU5F1:0.216128084509;FOX{I1,J2}:0.21551125775;NKX6-1,2:0.210211622423;NFE2:0.188765848829;ZNF384:0.183249851148;ZNF143:0.145105222089;T:0.14003266951;SOX5:0.126547848167;CUX2:0.120792871282;PAX4:0.114151120895;PAX2:0.10042793388;NKX3-2:0.0952769791242;MAZ:0.0792429592608;EP300:0.0544687474882;SOX{8,9,10}:0.0503528919821;ARID5B:0.021859815038;OCT4_SOX2{dimer}:0.0213406944303;CEBPA,B_DDIT3:0.0156857801536;ZIC1..3:0.0140038005082;ELF1,2,4:0.00396588966964;ZFP161:0.00190662423152;JUN:-0.0210999545453;FOXP1:-0.0313563223807;NKX2-3_NKX2-5:-0.0317240416943;NFIX:-0.0328546980492;CDC5L:-0.0335321019683;FOSL2:-0.0368325730532;NR6A1:-0.0383533199682;HES1:-0.0595612059647;NR3C1:-0.0634304484808;ATF2:-0.0675570787233;RFX1:-0.0686535500391;DBP:-0.0768836641019;PRRX1,2:-0.0793367923399;TFAP2B:-0.0827619218672;SOX2:-0.0887649802256;ZBTB16:-0.0894443868286;PATZ1:-0.0913427843562;TP53:-0.106731870425;HMGA1,2:-0.113568573852;HSF1,2:-0.118533620962;BACH2:-0.128464803501;SRF:-0.130538058266;NFKB1_REL_RELA:-0.131077951036;PAX1,9:-0.13556426838;PBX1:-0.148165661755;PAX3,7:-0.157391933382;STAT5{A,B}:-0.160074415586;ADNP_IRX_SIX_ZHX:-0.168145187483;MEF2{A,B,C,D}:-0.179611225489;IRF1,2:-0.197677193669;NRF1:-0.199174429558;POU3F1..4:-0.201180259888;HBP1_HMGB_SSRP1_UBTF:-0.204962126079;AIRE:-0.206348138494;CREB1:-0.211853309181;STAT2,4,6:-0.229351873241;TFCP2:-0.261357126043;ESRRA:-0.280407588809;HAND1,2:-0.281177121891;FOXL1:-0.296770280736;PPARG:-0.307655661951;ALX4:-0.309572156559;GLI1..3:-0.33992438045;BREu{core}:-0.347568200756;RREB1:-0.348497754311;EVI1:-0.35879746129;IKZF1:-0.360532229364;ESR1:-0.372051780234;XBP1:-0.374931321446;DMAP1_NCOR{1,2}_SMARC:-0.378049326741;NR5A1,2:-0.38010604498;IKZF2:-0.392433979254;NHLH1,2:-0.397799696104;GCM1,2:-0.411049981522;GTF2A1,2:-0.41219139169;MYBL2:-0.417661717057;MAFB:-0.418392862201;NFE2L2:-0.427093914308;HOX{A5,B5}:-0.430643973256;GTF2I:-0.430659387651;MTE{core}:-0.448509362687;EGR1..3:-0.463261298106;FOXA2:-0.467319196819;SPIB:-0.46874656409;EBF1:-0.481466972642;SPI1:-0.518903546866;ETS1,2:-0.51975037973;GATA4:-0.538490841082;LHX3,4:-0.554392328805;TAL1_TCF{3,4,12}:-0.570798638061;POU1F1:-0.582636935565;MZF1:-0.588521214341;GFI1:-0.595404005525;KLF4:-0.610873532977;GFI1B:-0.624832667474;HOX{A4,D4}:-0.634365296326;BPTF:-0.643821157519;RUNX1..3:-0.697159077198;UFEwm:-0.702269619867;PRDM1:-0.767708391263;HIC1:-0.768611529852;YY1:-0.783591204052;FOXP3:-0.835538688895;MYFfamily:-0.854670103319;REST:-0.861190534366;ZNF423:-0.868610608787;GZF1:-0.887973395482;NFATC1..3:-0.914477482094;ZNF238:-0.935506450899;STAT1,3:-0.937765379875;TOPORS:-0.937895171579;TGIF1:-0.948400845039;TLX1..3_NFIC{dimer}:-0.951266375222;TFAP4:-0.952497672251;ZBTB6:-0.955191977713;PAX5:-1.01073863404;NFIL3:-1.0128160734;FOXO1,3,4:-1.11710468574;NFE2L1:-1.1274769873;AR:-1.14220284258;NR1H4:-1.20072368524;ALX1:-1.36807128906;PAX6:-1.41081805055;SPZ1:-1.5706723796;NKX2-2,8:-1.60561129465;SMAD1..7,9:-1.64579029455;RXRA_VDR{dimer}:-1.65528192485;RXR{A,B,G}:-1.77910535778;NANOG{mouse}:-1.85262296867;NKX3-1:-2.22124251362;HMX1:-2.25204661729
|top_motifs=HOX{A6,A7,B6,B7}:2.84173573174;ZEB1:2.11286707943;VSX1,2:2.10068548197;SNAI1..3:2.09699763821;FOXQ1:1.67244578191;PDX1:1.4242782586;HNF4A_NR2F1,2:1.36349017199;LEF1_TCF7_TCF7L1,2:1.33858267847;HNF1A:1.32421891781;FOXD3:1.32142982413;SP1:1.1940150962;bHLH_family:1.17452177804;FOXN1:1.17068450903;RORA:1.15765880961;ATF4:1.11210506202;ZNF148:1.10509179049;XCPE1{core}:0.899427951448;TEAD1:0.844657031166;NFY{A,B,C}:0.837407636142;TLX2:0.814904540538;ATF6:0.78853776275;RBPJ:0.781040300481;ONECUT1,2:0.741142978917;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.64478787862;TEF:0.637953306418;TFDP1:0.626828335868;MYOD1:0.60020284128;HLF:0.583886830623;POU2F1..3:0.567543294204;PAX8:0.557155555241;MYB:0.543924890402;SREBF1,2:0.542387920761;TBP:0.535005396099;MED-1{core}:0.510507935673;POU6F1:0.507830537486;FOX{F1,F2,J1}:0.505940901066;FOXM1:0.483177265363;PITX1..3:0.442525851013;E2F1..5:0.440336827913;TFAP2{A,C}:0.438547503373;LMO2:0.433993830932;ATF5_CREB3:0.427498757791;ELK1,4_GABP{A,B1}:0.404592292726;SOX17:0.386737908275;CRX:0.38371066397;CDX1,2,4:0.368804420226;HIF1A:0.365875147403;EN1,2:0.323642736655;GATA6:0.307722993304;MTF1:0.301686172891;FOX{D1,D2}:0.300867770242;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.293646852501;IRF7:0.290404625004;FOS_FOS{B,L1}_JUN{B,D}:0.288614569095;HOXA9_MEIS1:0.287555304899;NANOG:0.255797349901;AHR_ARNT_ARNT2:0.252730004214;NKX2-1,4:0.246710159278;TBX4,5:0.228469676999;RFX2..5_RFXANK_RFXAP:0.226591400718;POU5F1:0.216128084509;FOX{I1,J2}:0.21551125775;NKX6-1,2:0.210211622423;NFE2:0.188765848829;ZNF384:0.183249851148;ZNF143:0.145105222089;T:0.14003266951;SOX5:0.126547848167;CUX2:0.120792871282;PAX4:0.114151120895;PAX2:0.10042793388;NKX3-2:0.0952769791242;MAZ:0.0792429592608;EP300:0.0544687474882;SOX{8,9,10}:0.0503528919821;ARID5B:0.021859815038;OCT4_SOX2{dimer}:0.0213406944303;CEBPA,B_DDIT3:0.0156857801536;ZIC1..3:0.0140038005082;ELF1,2,4:0.00396588966964;ZFP161:0.00190662423152;JUN:-0.0210999545453;FOXP1:-0.0313563223807;NKX2-3_NKX2-5:-0.0317240416943;NFIX:-0.0328546980492;CDC5L:-0.0335321019683;FOSL2:-0.0368325730532;NR6A1:-0.0383533199682;HES1:-0.0595612059647;NR3C1:-0.0634304484808;ATF2:-0.0675570787233;RFX1:-0.0686535500391;DBP:-0.0768836641019;PRRX1,2:-0.0793367923399;TFAP2B:-0.0827619218672;SOX2:-0.0887649802256;ZBTB16:-0.0894443868286;PATZ1:-0.0913427843562;TP53:-0.106731870425;HMGA1,2:-0.113568573852;HSF1,2:-0.118533620962;BACH2:-0.128464803501;SRF:-0.130538058266;NFKB1_REL_RELA:-0.131077951036;PAX1,9:-0.13556426838;PBX1:-0.148165661755;PAX3,7:-0.157391933382;STAT5{A,B}:-0.160074415586;ADNP_IRX_SIX_ZHX:-0.168145187483;MEF2{A,B,C,D}:-0.179611225489;IRF1,2:-0.197677193669;NRF1:-0.199174429558;POU3F1..4:-0.201180259888;HBP1_HMGB_SSRP1_UBTF:-0.204962126079;AIRE:-0.206348138494;CREB1:-0.211853309181;STAT2,4,6:-0.229351873241;TFCP2:-0.261357126043;ESRRA:-0.280407588809;HAND1,2:-0.281177121891;FOXL1:-0.296770280736;PPARG:-0.307655661951;ALX4:-0.309572156559;GLI1..3:-0.33992438045;BREu{core}:-0.347568200756;RREB1:-0.348497754311;EVI1:-0.35879746129;IKZF1:-0.360532229364;ESR1:-0.372051780234;XBP1:-0.374931321446;DMAP1_NCOR{1,2}_SMARC:-0.378049326741;NR5A1,2:-0.38010604498;IKZF2:-0.392433979254;NHLH1,2:-0.397799696104;GCM1,2:-0.411049981522;GTF2A1,2:-0.41219139169;MYBL2:-0.417661717057;MAFB:-0.418392862201;NFE2L2:-0.427093914308;HOX{A5,B5}:-0.430643973256;GTF2I:-0.430659387651;MTE{core}:-0.448509362687;EGR1..3:-0.463261298106;FOXA2:-0.467319196819;SPIB:-0.46874656409;EBF1:-0.481466972642;SPI1:-0.518903546866;ETS1,2:-0.51975037973;GATA4:-0.538490841082;LHX3,4:-0.554392328805;TAL1_TCF{3,4,12}:-0.570798638061;POU1F1:-0.582636935565;MZF1:-0.588521214341;GFI1:-0.595404005525;KLF4:-0.610873532977;GFI1B:-0.624832667474;HOX{A4,D4}:-0.634365296326;BPTF:-0.643821157519;RUNX1..3:-0.697159077198;UFEwm:-0.702269619867;PRDM1:-0.767708391263;HIC1:-0.768611529852;YY1:-0.783591204052;FOXP3:-0.835538688895;MYFfamily:-0.854670103319;REST:-0.861190534366;ZNF423:-0.868610608787;GZF1:-0.887973395482;NFATC1..3:-0.914477482094;ZNF238:-0.935506450899;STAT1,3:-0.937765379875;TOPORS:-0.937895171579;TGIF1:-0.948400845039;TLX1..3_NFIC{dimer}:-0.951266375222;TFAP4:-0.952497672251;ZBTB6:-0.955191977713;PAX5:-1.01073863404;NFIL3:-1.0128160734;FOXO1,3,4:-1.11710468574;NFE2L1:-1.1274769873;AR:-1.14220284258;NR1H4:-1.20072368524;ALX1:-1.36807128906;PAX6:-1.41081805055;SPZ1:-1.5706723796;NKX2-2,8:-1.60561129465;SMAD1..7,9:-1.64579029455;RXRA_VDR{dimer}:-1.65528192485;RXR{A,B,G}:-1.77910535778;NANOG{mouse}:-1.85262296867;NKX3-1:-2.22124251362;HMX1:-2.25204661729
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS007883
|accession_numbers=DRX007989;DRR008861;DRZ000286;DRZ001671;CAGE
|library_id=CNhs11255
}}
}}

Revision as of 20:03, 16 October 2013


Name:rectal cancer cell line:TT1TKB
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:cell lines
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuerectum
dev stageNA
sexmale
ageunknown
cell typeunclassifiable
cell lineTT1TKB
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS007883
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Hg19

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.194
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.32
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.472
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.108
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.201
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0507
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.136
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.472
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.327
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.113
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0325
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.229
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0745
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11255

Jaspar motifP-value
MA0002.20.00423
MA0003.10.815
MA0004.10.031
MA0006.10.405
MA0007.10.478
MA0009.10.499
MA0014.10.0142
MA0017.10.00504
MA0018.20.0269
MA0019.10.514
MA0024.10.0332
MA0025.10.207
MA0027.10.871
MA0028.10.00462
MA0029.10.0506
MA0030.10.0718
MA0031.10.0409
MA0035.20.00129
MA0038.10.0171
MA0039.21.89383e-4
MA0040.10.957
MA0041.10.566
MA0042.10.953
MA0043.10.0137
MA0046.13.15768e-9
MA0047.20.139
MA0048.10.929
MA0050.10.241
MA0051.10.0087
MA0052.10.645
MA0055.10.00954
MA0057.10.892
MA0058.10.0293
MA0059.10.957
MA0060.15.07241e-11
MA0061.10.0135
MA0062.20.0198
MA0065.20.269
MA0066.10.467
MA0067.10.298
MA0068.10.495
MA0069.10.989
MA0070.10.367
MA0071.10.83
MA0072.10.155
MA0073.10.255
MA0074.10.933
MA0076.10.0608
MA0077.10.714
MA0078.10.727
MA0079.20.334
MA0080.23.07673e-5
MA0081.10.00826
MA0083.10.191
MA0084.10.14
MA0087.10.643
MA0088.10.314
MA0090.10.0131
MA0091.10.00647
MA0092.10.0533
MA0093.10.0218
MA0099.20.049
MA0100.10.843
MA0101.10.482
MA0102.20.601
MA0103.14.96469e-6
MA0104.20.205
MA0105.15.8165e-4
MA0106.10.177
MA0107.10.143
MA0108.23.3645e-5
MA0111.10.491
MA0112.20.211
MA0113.10.756
MA0114.14.94926e-6
MA0115.10.0601
MA0116.10.00669
MA0117.10.622
MA0119.10.0111
MA0122.10.418
MA0124.10.589
MA0125.10.00264
MA0131.10.444
MA0135.10.554
MA0136.10.00265
MA0137.20.41
MA0138.20.0624
MA0139.10.494
MA0140.10.00748
MA0141.10.831
MA0142.10.872
MA0143.10.438
MA0144.10.691
MA0145.10.357
MA0146.10.197
MA0147.10.25
MA0148.10.236
MA0149.10.694
MA0150.10.615
MA0152.10.268
MA0153.16.75349e-8
MA0154.10.126
MA0155.10.147
MA0156.10.26
MA0157.10.104
MA0159.10.289
MA0160.10.547
MA0162.10.895
MA0163.10.35
MA0164.10.202
MA0258.10.0488
MA0259.10.244



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11255

Novel motifP-value
10.525
100.547
1000.492
1010.304
1020.542
1030.218
1040.79
1050.238
1060.643
1070.631
1080.522
1090.352
110.304
1100.883
1110.0219
1120.0666
1130.552
1140.233
1150.0207
1160.111
1170.208
1180.813
1190.171
120.63
1200.272
1210.761
1220.259
1230.0229
1240.711
1250.0092
1260.243
1270.784
1280.0485
1290.785
130.0385
1300.198
1310.0463
1320.593
1330.0539
1340.0492
1350.0229
1360.0648
1370.196
1380.0722
1390.0252
140.45
1400.957
1410.688
1420.965
1430.219
1440.349
1450.599
1460.352
1470.991
1480.917
1490.79
150.739
1500.707
1510.334
1520.0357
1530.475
1540.1
1550.981
1560.213
1570.827
1580.174
1590.635
160.457
1600.681
1610.756
1620.791
1630.698
1640.377
1650.586
1660.823
1670.402
1680.674
1690.763
170.461
180.221
190.143
20.333
200.226
210.728
220.826
230.796
240.891
250.598
260.736
270.297
280.63
290.786
30.153
300.219
310.434
320.003
330.576
340.611
350.112
360.557
370.403
380.95
390.605
40.154
400.519
410.269
420.698
430.488
440.645
450.257
460.257
470.961
480.846
490.464
50.336
500.269
510.654
520.772
530.705
540.857
550.486
560.88
570.575
580.969
590.262
60.294
600.804
610.555
620.272
630.521
640.515
650.362
666.03755e-4
670.333
680.0012
690.513
70.505
700.128
710.0371
720.967
730.239
740.0867
750.345
760.858
770.209
780.0609
790.0927
80.185
800.792
810.0164
820.00181
830.0319
840.582
850.176
860.329
870.552
880.817
890.124
90.214
900.38
910.0676
920.2
930.317
940.161
950.925
960.724
970.419
980.289
990.766



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11255


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3119 (gastrointestinal system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001052 (rectum)
0000160 (intestine)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)
0004907 (lower digestive tract)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101532 (rectal cancer cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0010316 (germ layer / neural crest)

{{{1}}} Accession numbers
MethodSample accession id
{{{2}}} 
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{4}}} {{{3}}}
Accession ID

Library idBAMCTSS
{{{4}}}
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:10469-106I1&oldid=3076919"