FFCP PHASE1:Hg19::chr17:48266758..48266778,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=2197 | |||
|TSSclassifier=not | |||
|UniProt=P02452 | |||
|association_with_transcript=-185bp_to_J00112_5end | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_50_at_COL1A1_5end | |||
|id=chr17:48266758..48266778,- | |||
|ontology_enrichment_celltype=CL:0000055!9.64e-39!180;CL:0000057!9.04e-26!75;CL:0000183!2.37e-15!59;CL:0000680!9.17e-15!57;CL:0000056!9.17e-15!57;CL:0000355!9.17e-15!57;CL:0000048!8.28e-14!430;CL:0000187!8.68e-14!54;CL:0000723!6.77e-13!436;CL:0000034!1.34e-12!444;CL:0000393!3.72e-12!60;CL:0000211!3.72e-12!60;CL:0000192!3.08e-10!42;CL:0000514!3.08e-10!42;CL:0002371!9.34e-09!591;CL:0000144!1.64e-08!625;CL:0002620!1.73e-08!23;CL:0002334!1.85e-08!12;CL:0000499!1.32e-07!27;CL:0000327!2.52e-07!14;CL:0002570!3.35e-07!8;CL:0002494!3.90e-07!16;CL:0002320!7.34e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000134;3.76e-12;55!CL:0000048;5.27e-11;58!CL:0000723;1.80e-10;61!CL:0002570;7.29e-10;8!CL:0000499;6.66e-09;28!CL:0000057;3.21e-08;73!CL:0002320;5.80e-08;188!CL:0002620;6.80e-08;23!CL:0000034;8.56e-08;69!CL:0000327;8.79e-08;15!CL:0002334;1.26e-07;12!CL:0002569;2.91e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.91e-20,76;CL:0000048,1.74e-15,427;CL:0000723,8.68e-15,433;CL:0000034,6.82e-14,441;CL:0002320,8.14e-12,361;CL:0000134,4.69e-11,354;CL:0002570,9.16e-10,8;CL:0000219,2.00e-09,386;CL:0000499,6.16e-09,28;CL:0002620,5.66e-08,23;CL:0000327,7.28e-08,15;CL:0002334,1.27e-07,12;CL:0002569,2.23e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.02e-15!83;UBERON:0002329!1.02e-15!83;UBERON:0003077!1.02e-15!83;UBERON:0003059!1.02e-15!83;UBERON:0007282!1.02e-15!83;UBERON:0009618!1.02e-15!83;UBERON:0007285!1.02e-15!83;UBERON:0004290!2.61e-15!70;UBERON:0001134!4.22e-15!61;UBERON:0002036!4.22e-15!61;UBERON:0003082!4.22e-15!61;UBERON:0002385!9.32e-15!63;UBERON:0001015!9.32e-15!63;UBERON:0000383!9.32e-15!63;UBERON:0000486!1.27e-12!82;UBERON:0005256!2.16e-09!143;UBERON:0001013!2.25e-07!14;UBERON:0003102!2.87e-07!95;UBERON:0002199!3.38e-07!45;UBERON:0002416!3.38e-07!45;UBERON:0004872!4.14e-07!84;UBERON:0002384!8.83e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.74e-09;14!UBERON:0004457;7.46e-09;9!UBERON:0000042;7.46e-09;9!UBERON:0003688;1.28e-08;6!UBERON:0002358;1.28e-08;6!UBERON:0003684;1.28e-08;6!UBERON:0001178;1.28e-08;6!UBERON:0003104;1.53e-08;7!UBERON:0009142;1.53e-08;7!UBERON:0002384;2.60e-08;198!UBERON:0003422;2.91e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,8.71e-12,371;UBERON:0001013,1.90e-09,14;UBERON:0003688,1.81e-08,6;UBERON:0002358,1.81e-08,6;UBERON:0003684,1.81e-08,6;UBERON:0001178,1.81e-08,6;UBERON:0003422,2.23e-07,6;UBERON:0002199,8.35e-07,46;UBERON:0002416,8.35e-07,46 | |||
|phase1_expression=4.1786027232228,4.71021152560163,6.20199378022273,4.00293193412522,4.46961094427288,6.97870819280295,12.6649939084155,0,0.261185628199839,0.245733936501509,0,0,2.11013582582763,1.11389717664042,0.994192127183747,0.672325146451775,0,0.730310090387373,1.95173119516203,1.35433163884467,2.65200898617529,4.70182082217132,0,0,0.87879847716362,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,1.34140171940727,1.40648818027883,4.69870898099936,1.00267582127178,1.88300474649071,6.36228757640879,4.86634870302636,0.0945348171640679,1.10864698731282,1.58102614247627,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.44852317882041,1.77282716330412,0.264818361626438,7.74458876021797,2.83734705758686,1.12135520028461,1.06748995729705,4.19334832309172,0.933633106199299,1.48181739276657,0.490385709340376,3.78393569112329,2.30470369792,0.468642863667593,0,0,0.597794722207204,0.23486899728753,0.161872944368132,0.280901613404497,0.816616685019573,0.491337269247072,0.309977343527296,4.75201142912821,7.41800787835671,0.910161361938026,7.18618141816238,0.505008341862199,0.500474079487857,0,0,5.51678032438235,6.30999847407706,0.907457465280168,1.97328599257748,4.69826255400848,4.87443372666992,3.60109315301283,2.06105058476878,2.57640540045629,2.41951913231067,3.71307930930786,3.11798416515836,3.5340728394176,1.84099797284599,3.71785930683267,2.13005755509969,1.41052937518696,1.01736355386293,0,0,0,0,0.132529768321485,0.116193942869518,0.10366105501537,0,0,1.56449532329816,2.57296375277154,0,1.39310378409594,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,5.3504621473082,10.2906097969879,0,0,0,0,0,0.171567810298526,0,0,0,0,0.325808305310325,1.03993478527958,0,0.231860809950154,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308482478109971,0,0,0.224262168690721,2.1798003441664,0.4400297149257,1.68053230485111,7.15312891703765,2.535908257668,3.98907174877306,1.04007436911366,0,1.41849132023278,0.799266537048298,3.43147184779554,14.650783345569,4.11620168390384,2.28015329005615,4.26470338491055,1.58390374586686,0,0,0.099972991182057,0,0,0,3.59437283237374,4.59447743336456,0,1.30303176000821,1.64381058040307,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.36807447515742,0.500170521059677,0.542530047399471,16.221727199403,13.0253161821928,9.61984731707001,2.34282829985426,3.91229929646035,0,2.0694614258501,2.65690239414175,3.13427586520895,0.955719759148911,4.89502893656851,5.14715135716284,0,0,0,0.303127571446259,4.99306318531491,2.72151263996712,7.19512642674453,3.22270143904931,16.2782854771183,8.45718385087626,3.07024349440022,10.7772127166217,1.48418066444991,0.462629081407967,4.08391968220192,0.657017248110473,0.519254429183621,1.74315567689939,0,0.200506470303285,0,2.52591785962135,2.00300284807389,2.49136388422906,0,0,0,0,0,0,0,0,0,0.812839312631559,2.00675909541941,0,0,0,0,0,0,0,0,0,0.640986253728404,0.495056999523528,0.574265537996172,0,1.6068392984416,0.193341436584244,0.770243085573222,0.614014698904518,0.827019434907183,0.859361958946189,2.0302337147992,0.767039646744908,3.11612124763581,0,0.384380134730212,0.127612712494584,0.10115778085555,0.929691098594572,6.92587163027408,0,0,0.532306030317022,0,0.74129687641568,0.715624433709956,0,0.316379424718726,3.24071329670502,2.04718233049067,0.855877976067841,0.636406495851874,1.56989728039846,1.07923474549989,4.94166653524899,2.82749765629647,0.404364963146632,0,0.842516912477962,2.43816869544795,0.487426979262569,0,1.50149902548784,6.78746073377821,3.39024349860728,0.551365343546124,0,0.438450885253763,3.47265320560013,0.655894752046633,0.608731130888112,1.54911749049875,1.97186921772569,1.00387946542836,1.67023369722306,1.78335525740625,0.709522128141196,2.9555068941673,2.63435914367922,1.13841952129715,2.44954304171488,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,4.66559381492711,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,1.30815439456455,0.113942055847001,0,0,0,0,1.00757352742049,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,1.83309043480088,0,0,0,0,7.2231988256891,0,0,0,0,0.394584402849391,2.41981432097328,0.30607276163049,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0730893170861856,0,0,0.0882561266915003,2.71176888936639,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.859530882839914,0,0.279282401272254,0.229160424011684,0,0.199679000498991,0,0,0.470284307407084,1.44119953416961,0,0,0,0,0,0,0,0,0,0.275078873194468,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,1.08599920350743,0.864221491201268,0.326587360109409,1.19730191562487,0,0.851940108927109,0,0,0,0,0,0,0,0,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.32838928371935,6.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| |||
|short_description=p50@COL1A1 | |||
}} |
Revision as of 16:13, 20 January 2014
Short description: | p50@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_50_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -185bp_to_J00112_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | P02452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.91e-20 | 76 |
multi fate stem cell | 1.74e-15 | 427 |
somatic stem cell | 8.68e-15 | 433 |
stem cell | 6.82e-14 | 441 |
connective tissue cell | 8.14e-12 | 361 |
mesenchymal cell | 4.69e-11 | 354 |
mesenchymal stem cell of adipose | 9.16e-10 | 8 |
motile cell | 2.00e-09 | 386 |
stromal cell | 6.16e-09 | 28 |
skin fibroblast | 5.66e-08 | 23 |
extracellular matrix secreting cell | 7.28e-08 | 15 |
preadipocyte | 1.27e-07 | 12 |
mesenchymal stem cell of umbilical cord | 2.23e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 8.71e-12 | 371 |
adipose tissue | 1.90e-09 | 14 |
omentum | 1.81e-08 | 6 |
peritoneum | 1.81e-08 | 6 |
abdominal cavity | 1.81e-08 | 6 |
visceral peritoneum | 1.81e-08 | 6 |
mesenchyme of umbilical cord | 2.23e-07 | 6 |
integument | 8.35e-07 | 46 |
integumental system | 8.35e-07 | 46 |