FFCP PHASE1:Hg19::chr19:2427539..2427591,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26517 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11816 | |||
|TSSclassifier=strong | |||
|UniProt=Q9Y5L4 | |||
|association_with_transcript=283bp_to_ENST00000215570,NM_012458,uc002lvx.1_5end | |||
|coexpression_cluster_id=C685 | |||
|description=CAGE_peak_1_at_TIMM13_5end | |||
|id=chr19:2427539..2427591,- | |||
|ontology_enrichment_celltype=CL:0000144!9.35e-36!625;CL:0000012!1.79e-34!682;CL:0002321!4.03e-34!248;CL:0000548!1.83e-33!679;CL:0000004!1.83e-33!679;CL:0000255!1.83e-33!679;CL:0000220!3.31e-33!246;CL:0002371!2.69e-26!591;CL:0000222!1.90e-23!119;CL:0000003!1.42e-20!722;CL:0000055!3.14e-20!180;CL:0000183!7.38e-15!59;CL:0000393!3.27e-13!60;CL:0000211!3.27e-13!60;CL:0000680!8.72e-13!57;CL:0000056!8.72e-13!57;CL:0000355!8.72e-13!57;CL:0000066!9.80e-13!254;CL:0000187!2.34e-12!54;CL:0002078!4.15e-11!44;CL:0000115!1.92e-10!35;CL:0000221!4.23e-10!71;CL:0000213!4.74e-10!57;CL:0000215!4.74e-10!57;CL:0000192!5.10e-10!42;CL:0000514!5.10e-10!42;CL:0002139!3.55e-09!24;CL:0000071!6.19e-09!18;CL:0002546!6.19e-09!18;CL:0000359!2.03e-08!32;CL:0000333!5.36e-08!41;CL:0000063!7.81e-08!578;CL:1000449!2.08e-07!16;CL:0000133!4.87e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000115;3.02e-09;36!CL:0002139;3.54e-09;24!CL:0000071;6.25e-09;18!CL:0002078;4.26e-08;45!CL:1000449;4.71e-08;15!CL:0000359;5.97e-08;32!CL:0000187;2.38e-07;55!CL:0002681;5.58e-07;12!CL:0002584;5.58e-07;12!CL:0000192;6.51e-07;43!CL:0000213;6.76e-07;58!CL:0000215;6.76e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.15e-34,250;CL:0000222,1.32e-23,121;CL:0000066,7.33e-13,253;CL:0000393,7.39e-13,61;CL:0000211,7.39e-13,61;CL:0000680,1.99e-12,58;CL:0000056,1.99e-12,58;CL:0000355,1.99e-12,58;CL:0000187,5.39e-12,55;CL:0002078,1.39e-11,45;CL:0000115,6.20e-11,36;CL:0000213,1.76e-10,58;CL:0000215,1.76e-10,58;CL:0000221,3.08e-10,72;CL:0000192,1.18e-09,43;CL:0000514,1.18e-09,43;CL:0002139,3.55e-09,24;CL:0000071,6.19e-09,18;CL:0002546,6.19e-09,18;CL:0000359,2.03e-08,32;CL:1000449,4.73e-08,15;CL:0000333,5.36e-08,41;CL:0000133,4.87e-07,59;CL:0002681,5.65e-07,12;CL:0002584,5.65e-07,12 | |||
|ontology_enrichment_development_v019=CL:0002546;6.25e-09;18!CL:0000222;2.62e-07;121!CL:0000355;3.53e-07;58!CL:0000514;6.51e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!2.38e-15!82;UBERON:0002049!8.75e-15!79;UBERON:0007798!8.75e-15!79;UBERON:0004290!2.17e-14!70;UBERON:0000914!2.91e-14!83;UBERON:0002329!2.91e-14!83;UBERON:0003077!2.91e-14!83;UBERON:0003059!2.91e-14!83;UBERON:0007282!2.91e-14!83;UBERON:0009618!2.91e-14!83;UBERON:0007285!2.91e-14!83;UBERON:0003914!1.26e-13!118;UBERON:0005256!1.41e-13!143;UBERON:0000490!4.70e-13!138;UBERON:0000055!3.11e-12!69;UBERON:0004872!1.86e-11!84;UBERON:0001134!2.33e-11!61;UBERON:0002036!2.33e-11!61;UBERON:0003082!2.33e-11!61;UBERON:0001981!7.85e-11!60;UBERON:0007500!7.85e-11!60;UBERON:0004537!7.85e-11!60;UBERON:0006965!7.85e-11!60;UBERON:0002385!4.82e-10!63;UBERON:0001015!4.82e-10!63;UBERON:0000383!4.82e-10!63;UBERON:0001637!1.15e-09!42;UBERON:0003509!1.15e-09!42;UBERON:0004572!1.15e-09!42;UBERON:0000119!3.77e-09!312;UBERON:0002100!3.79e-09!216;UBERON:0001986!6.19e-09!18;UBERON:0004638!6.19e-09!18;UBERON:0004852!6.19e-09!18;UBERON:0000483!1.29e-08!309;UBERON:0000487!2.05e-08!22;UBERON:0004535!2.59e-08!110;UBERON:0006914!3.68e-08!25;UBERON:0003104!7.09e-08!238;UBERON:0009142!7.09e-08!238;UBERON:0001009!1.31e-07!113;UBERON:0004211!2.08e-07!16;UBERON:0001285!2.08e-07!16;UBERON:0007684!2.08e-07!16;UBERON:0003220!2.08e-07!16;UBERON:0004208!2.08e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0003914;5.63e-09;74!UBERON:0004638;6.25e-09;18!UBERON:0001986;6.25e-09;18!UBERON:0004852;6.25e-09;18!UBERON:0000490;6.73e-09;33!UBERON:0000487;2.11e-08;22!UBERON:0006914;3.83e-08;25!UBERON:0007500;4.57e-08;56!UBERON:0001981;4.57e-08;56!UBERON:0004537;4.57e-08;56!UBERON:0006555;4.71e-08;15!UBERON:0004819;4.71e-08;15!UBERON:0001285;4.71e-08;15!UBERON:0007684;4.71e-08;15!UBERON:0000055;2.69e-07;65!UBERON:0002049;2.70e-07;75!UBERON:0007798;2.70e-07;75!UBERON:0000353;3.13e-07;15!UBERON:0001637;4.68e-07;42!UBERON:0003509;4.68e-07;42!UBERON:0004572;4.68e-07;42!UBERON:0001225;5.58e-07;12!UBERON:0008987;5.58e-07;12 | |||
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| |||
|short_description=p1@TIMM13 | |||
}} |
Revision as of 20:24, 20 January 2014
Short description: | p1@TIMM13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TIMM13_5end |
Coexpression cluster: | C685_Alveolar_Mesenchymal_Renal_Smooth_Hepatic_Fibroblast_Keratocytes |
Association with transcript: | 283bp_to_ENST00000215570, NM_012458, uc002lvx.1_5end |
EntrezGene: | TIMM13 |
HGNC: | 11816 |
UniProt: | Q9Y5L4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.15e-34 | 250 |
mesodermal cell | 1.32e-23 | 121 |
epithelial cell | 7.33e-13 | 253 |
electrically responsive cell | 7.39e-13 | 61 |
electrically active cell | 7.39e-13 | 61 |
muscle precursor cell | 1.99e-12 | 58 |
myoblast | 1.99e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.99e-12 | 58 |
muscle cell | 5.39e-12 | 55 |
meso-epithelial cell | 1.39e-11 | 45 |
endothelial cell | 6.20e-11 | 36 |
lining cell | 1.76e-10 | 58 |
barrier cell | 1.76e-10 | 58 |
ectodermal cell | 3.08e-10 | 72 |
smooth muscle cell | 1.18e-09 | 43 |
smooth muscle myoblast | 1.18e-09 | 43 |
endothelial cell of vascular tree | 3.55e-09 | 24 |
blood vessel endothelial cell | 6.19e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.19e-09 | 18 |
vascular associated smooth muscle cell | 2.03e-08 | 32 |
epithelial cell of nephron | 4.73e-08 | 15 |
migratory neural crest cell | 5.36e-08 | 41 |
neurectodermal cell | 4.87e-07 | 59 |
kidney cortical cell | 5.65e-07 | 12 |
renal cortical epithelial cell | 5.65e-07 | 12 |