FFCP PHASE1:Hg19::chr2:1417228..1417247,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=7173 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12015 | |||
|TSSclassifier=weak | |||
|UniProt=P07202,C9JFW0,E9PFM6,F5H3F2,Q502Y3,Q6P534 | |||
|association_with_transcript=0bp_to_ENST00000329066,ENST00000337415,ENST00000345913,ENST00000346956,ENST00000349624,ENST00000382269,ENST00000536482,ENST00000539820,NM_000547,NM_001206744,NM_001206745,NM_175719,uc002qwr.2,uc002qwu.2,uc002qww.2,uc002qwx.2,uc010yin.1_5end | |||
|coexpression_cluster_id=C113 | |||
|description=CAGE_peak_1_at_TPO_5end | |||
|id=chr2:1417228..1417247,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005425;5.73e-23;1!UBERON:0007123;7.24e-19;5!UBERON:0006965;3.43e-12;2!UBERON:0003056;1.46e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000341!6.27e-32!2;UBERON:0003127!1.37e-31!2;UBERON:0000941!1.41e-16!1;UBERON:0004904!1.41e-16!1;UBERON:0002464!1.41e-16!1;UBERON:0001021!1.41e-16!1;UBERON:0001785!1.41e-16!1;UBERON:0005418!1.93e-16!1;UBERON:0001389!1.93e-16!1;UBERON:0000026!1.93e-16!1;UBERON:0008784!1.93e-16!1;UBERON:0006058!1.93e-16!1;UBERON:0003663!1.93e-16!1;UBERON:0001383!1.93e-16!1;UBERON:0004256!1.93e-16!1;UBERON:0002529!1.93e-16!1;UBERON:0004708!1.93e-16!1;UBERON:0002101!1.93e-16!1;UBERON:0004709!1.93e-16!1;UBERON:0003661!1.93e-16!1;UBERON:0002471!1.93e-16!1;UBERON:0004357!1.93e-16!1;UBERON:0009872!1.93e-16!1;UBERON:0004347!1.93e-16!1;UBERON:0005420!1.93e-16!1;UBERON:0005732!1.93e-16!1;UBERON:0006057!1.93e-16!1;UBERON:0000978!1.93e-16!1;UBERON:0002103!1.93e-16!1;UBERON:0001665!1.93e-16!1;UBERON:0003823!1.93e-16!1;UBERON:0000154!1.93e-16!1;UBERON:0005733!1.93e-16!1;UBERON:0005730!1.93e-16!1;UBERON:0000989!2.25e-16!1;UBERON:0008811!2.25e-16!1;UBERON:0006258!2.25e-16!1;UBERON:0005876!2.25e-16!1;UBERON:0004874!2.25e-16!1;UBERON:0000974!2.03e-14!10;UBERON:0002046!1.63e-13!5;UBERON:0004117!1.63e-13!5;UBERON:0007689!1.63e-13!5;UBERON:0007123!1.63e-13!5;UBERON:0003091!1.63e-13!5;UBERON:0009722!3.07e-13!11;UBERON:0007690!3.07e-13!11;UBERON:0007023!6.05e-10!115;UBERON:0008814!7.22e-10!15;UBERON:0003126!9.52e-10!7;UBERON:0001005!9.52e-10!7;UBERON:0003714!5.94e-09!2;UBERON:0005162!5.94e-09!2;UBERON:0000122!5.94e-09!2;UBERON:0001630!6.94e-09!2;UBERON:0005090!6.94e-09!2;UBERON:0003408!5.43e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0000341;5.00e-45;2!UBERON:0003127;1.53e-44;2!UBERON:0000941;5.73e-23;1!UBERON:0001785;5.73e-23;1!UBERON:0002464;5.73e-23;1!UBERON:0004904;5.73e-23;1!UBERON:0001021;5.73e-23;1!UBERON:0002046;7.24e-19;5!UBERON:0000974;9.04e-16;6!UBERON:0003126;1.58e-13;7!UBERON:0001005;1.58e-13;7!UBERON:0003714;3.43e-12;2!UBERON:0005162;3.43e-12;2!UBERON:0000122;3.43e-12;2!UBERON:0007196;8.33e-07;15!UBERON:0001558;8.33e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000341,5.00e-45,2;UBERON:0003127,1.53e-44,2;UBERON:0000941,5.13e-23,1;UBERON:0001785,5.13e-23,1;UBERON:0002464,5.13e-23,1;UBERON:0004904,5.13e-23,1;UBERON:0001021,5.13e-23,1;UBERON:0003902,5.13e-23,1;UBERON:0005425,5.13e-23,1;UBERON:0002046,7.24e-19,5;UBERON:0004117,7.24e-19,5;UBERON:0007689,7.24e-19,5;UBERON:0007123,7.24e-19,5;UBERON:0003091,7.24e-19,5;UBERON:0003126,1.58e-13,7;UBERON:0001005,1.58e-13,7;UBERON:0003714,3.24e-12,2;UBERON:0005162,3.24e-12,2;UBERON:0000122,3.24e-12,2;UBERON:0000974,7.40e-10,10;UBERON:0009722,4.08e-09,11;UBERON:0007690,4.08e-09,11;UBERON:0007023,6.47e-07,114;UBERON:0007196,8.33e-07,15;UBERON:0001558,8.33e-07,15;UBERON:0001781,9.63e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39097585901284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.85538840518309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.3254566116867,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,82.9480189594816,139.029627974824,0,0.186224142887574,0,2960.42027299228,1666.0519885826,0,0,0,3.65783247502649,11.3104521225645,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p1@TPO | |||
}} |
Revision as of 01:28, 21 January 2014
Short description: | p1@TPO |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_1_at_TPO_5end |
Coexpression cluster: | C113_thyroid_throat_lung_lymph_small_colon_trachea |
Association with transcript: | 0bp_to_ENST00000329066, ENST00000337415, ENST00000345913, ENST00000346956, ENST00000349624, ENST00000382269, ENST00000536482, ENST00000539820, NM_000547, NM_001206744, NM_001206745, NM_175719, uc002qwr.2, uc002qwu.2, uc002qww.2, uc002qwx.2, uc010yin.1_5end |
EntrezGene: | TPO |
HGNC: | 12015 |
UniProt: | P07202C9JFW0E9PFM6F5H3F2Q502Y3Q6P534 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
throat | 5.00e-45 | 2 |
open tracheal system trachea | 1.53e-44 | 2 |
cranial nerve II | 5.13e-23 | 1 |
cranial nerve | 5.13e-23 | 1 |
nerve trunk | 5.13e-23 | 1 |
nerve connecting eye with brain | 5.13e-23 | 1 |
nerve | 5.13e-23 | 1 |
retinal neural layer | 5.13e-23 | 1 |
presumptive neural retina | 5.13e-23 | 1 |
thyroid gland | 7.24e-19 | 5 |
pharyngeal pouch | 7.24e-19 | 5 |
thyroid diverticulum | 7.24e-19 | 5 |
pharyngeal pouch 2 | 7.24e-19 | 5 |
thyroid primordium | 7.24e-19 | 5 |
trachea | 1.58e-13 | 7 |
respiratory airway | 1.58e-13 | 7 |
neural tissue | 3.24e-12 | 2 |
multi cell component structure | 3.24e-12 | 2 |
neuron projection bundle | 3.24e-12 | 2 |
neck | 7.40e-10 | 10 |
entire pharyngeal arch endoderm | 4.08e-09 | 11 |
early pharyngeal endoderm | 4.08e-09 | 11 |
adult organism | 6.47e-07 | 114 |
tracheobronchial tree | 8.33e-07 | 15 |
lower respiratory tract | 8.33e-07 | 15 |
layer of retina | 9.63e-07 | 4 |