FFCP PHASE1:Hg19::chr2:43370225..43370237,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr2:43370225..43370237,- | |||
|id=chr2:43370225..43370237,- | |||
|ontology_enrichment_celltype=CL:0000625!8.28e-35!11;CL:0000791!2.11e-29!18;CL:0000789!2.11e-29!18;CL:0002420!2.11e-29!18;CL:0002419!2.11e-29!18;CL:0000790!2.11e-29!18;CL:0000084!6.94e-28!25;CL:0000827!6.94e-28!25;CL:0000838!5.86e-20!52;CL:0000542!1.70e-19!53;CL:0000051!1.70e-19!53;CL:0000623!2.30e-12!3;CL:0000825!2.30e-12!3;CL:0002087!2.34e-11!119;CL:0000738!7.24e-11!140;CL:0002031!1.62e-08!124;CL:0000037!8.62e-08!172;CL:0000566!8.62e-08!172;CL:0000988!4.62e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000625;5.02e-46;11!CL:0000791;3.56e-38;18!CL:0000789;3.56e-38;18!CL:0002419;3.56e-38;18!CL:0000084;1.34e-35;25!CL:0002127;6.44e-16;1!CL:0000911;6.44e-16;1!CL:0000814;6.44e-16;1!CL:0000542;1.26e-10;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000625,2.90e-46,11;CL:0000791,2.41e-38,18;CL:0000789,2.41e-38,18;CL:0002420,2.41e-38,18;CL:0002419,2.41e-38,18;CL:0000790,2.41e-38,18;CL:0000084,1.14e-35,25;CL:0000827,1.14e-35,25;CL:0000838,7.58e-17,52;CL:0000542,1.62e-16,53;CL:0000051,1.62e-16,53;CL:0002127,6.44e-16,1;CL:0000914,6.44e-16,1;CL:0000911,6.44e-16,1;CL:0000814,6.44e-16,1;CL:0002042,6.44e-16,1;CL:0002039,6.44e-16,1;CL:0002040,6.44e-16,1;CL:0002041,6.44e-16,1;CL:0002087,4.72e-09,115;CL:0000893,1.29e-08,2;CL:0002489,1.29e-08,2;CL:0000809,1.29e-08,2;CL:0000808,1.29e-08,2;CL:0000894,1.29e-08,2;CL:0000806,1.29e-08,2;CL:0000807,1.29e-08,2;CL:0000805,1.29e-08,2;CL:0002425,1.29e-08,2;CL:0000738,1.62e-07,136;CL:0002031,8.07e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000790;3.56e-38;18!CL:0000051;1.26e-10;53!CL:0002425;1.29e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!4.36e-12!15;UBERON:0000179!4.36e-12!15;UBERON:0000463!4.36e-12!15;UBERON:0002370!7.00e-10!4;UBERON:0005058!7.00e-10!4;UBERON:0009113!7.00e-10!4;UBERON:0003295!7.00e-10!4;UBERON:0005562!7.00e-10!4;UBERON:0004177!2.64e-09!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.39e-15;15!UBERON:0000179;2.39e-15;15!UBERON:0000463;2.39e-15;15!UBERON:0002390;4.77e-11;32!UBERON:0002370;1.20e-08;2!UBERON:0005058;1.20e-08;2!UBERON:0009113;1.20e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.44e-15,4;UBERON:0005058,1.44e-15,4;UBERON:0009113,1.44e-15,4;UBERON:0003295,1.44e-15,4;UBERON:0005562,1.44e-15,4;UBERON:0000178,2.48e-15,15;UBERON:0000179,2.48e-15,15;UBERON:0000463,2.48e-15,15;UBERON:0003351,1.07e-10,6;UBERON:0004177,2.69e-09,7;UBERON:0005057,2.69e-09,7;UBERON:0000974,9.22e-07,10;UBERON:0003408,9.22e-07,10;UBERON:0001042,9.22e-07,10;UBERON:0009145,9.22e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0.217010870715852,0.223915474239924,0.647787332037959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0.328875809207352,0,0,0.444859689486181,0.535081656179426,1.04535523804977,0.339928028092699,0,0.34362744548263,0.506039384039006,0.637130828648193,3.25541726928209,1.90090408889675,1.80690142893327,1.66382594500744,2.49861453104692,0.473554504088034,3.28451198768419,0,0.802320587350522,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.25923547175404,0.985153801009636,0.431255149719035,0.898401253958239,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24060815673732,0,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,1.13929437434833,0.952927101831156,0,2.59389324477087,1.08006287447623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334330152832435,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257831551894309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0.213233981900981,0,0.645889098360061,6.70406914395265,0,0,0,0,0,0.202056159043763,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | |||
|short_description=p@chr2:43370225..43370237,- | |||
}} |
Revision as of 02:49, 21 January 2014
Short description: | p@chr2:43370225..43370237, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:43370225..43370237, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 2.90e-46 | 11 |
mature alpha-beta T cell | 2.41e-38 | 18 |
alpha-beta T cell | 2.41e-38 | 18 |
immature T cell | 2.41e-38 | 18 |
mature T cell | 2.41e-38 | 18 |
immature alpha-beta T cell | 2.41e-38 | 18 |
T cell | 1.14e-35 | 25 |
pro-T cell | 1.14e-35 | 25 |
lymphoid lineage restricted progenitor cell | 7.58e-17 | 52 |
lymphocyte | 1.62e-16 | 53 |
common lymphoid progenitor | 1.62e-16 | 53 |
innate effector T cell | 6.44e-16 | 1 |
immature NK T cell | 6.44e-16 | 1 |
effector T cell | 6.44e-16 | 1 |
mature NK T cell | 6.44e-16 | 1 |
immature NK T cell stage IV | 6.44e-16 | 1 |
immature NK T cell stage I | 6.44e-16 | 1 |
immature NK T cell stage II | 6.44e-16 | 1 |
immature NK T cell stage III | 6.44e-16 | 1 |
nongranular leukocyte | 4.72e-09 | 115 |
thymocyte | 1.29e-08 | 2 |
double negative thymocyte | 1.29e-08 | 2 |
double-positive, alpha-beta thymocyte | 1.29e-08 | 2 |
DN4 thymocyte | 1.29e-08 | 2 |
DN1 thymic pro-T cell | 1.29e-08 | 2 |
DN2 thymocyte | 1.29e-08 | 2 |
DN3 thymocyte | 1.29e-08 | 2 |
immature single positive thymocyte | 1.29e-08 | 2 |
early T lineage precursor | 1.29e-08 | 2 |
leukocyte | 1.62e-07 | 136 |
hematopoietic lineage restricted progenitor cell | 8.07e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.44e-15 | 4 |
hemolymphoid system gland | 1.44e-15 | 4 |
thymic region | 1.44e-15 | 4 |
pharyngeal gland | 1.44e-15 | 4 |
thymus primordium | 1.44e-15 | 4 |
blood | 2.48e-15 | 15 |
haemolymphatic fluid | 2.48e-15 | 15 |
organism substance | 2.48e-15 | 15 |
pharyngeal epithelium | 1.07e-10 | 6 |
hemopoietic organ | 2.69e-09 | 7 |
immune organ | 2.69e-09 | 7 |
neck | 9.22e-07 | 10 |
gland of gut | 9.22e-07 | 10 |
chordate pharynx | 9.22e-07 | 10 |
pharyngeal region of foregut | 9.22e-07 | 10 |