FFCP PHASE1:Hg19::chr3:48507212..48507241,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12269 | |||
|TSSclassifier=strong | |||
|UniProt=Q9NSU2 | |||
|association_with_transcript=0bp_to_ENST00000422277,ENST00000436480,NM_016381,NM_033629,uc010hka.2_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_2_at_TREX1_5end | |||
|id=chr3:48507212..48507241,+ | |||
|ontology_enrichment_celltype=CL:0000860!1.81e-30!45;CL:0000766!1.90e-30!76;CL:0000557!3.87e-30!71;CL:0002009!3.32e-29!65;CL:0002057!5.88e-29!42;CL:0002194!9.42e-29!63;CL:0000576!9.42e-29!63;CL:0000040!9.42e-29!63;CL:0000559!9.42e-29!63;CL:0000839!6.97e-28!70;CL:0000763!9.42e-15!112;CL:0000049!9.42e-15!112;CL:0002393!4.34e-07!9;CL:0002397!4.34e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.19e-45;33!CL:0002057;9.19e-45;33!CL:0000576;1.74e-36;48!CL:0000473;3.98e-34;39!CL:0000234;3.98e-34;39!CL:0000766;2.67e-28;69!CL:0000763;1.34e-11;100!CL:0002393;1.15e-09;6!CL:0002397;1.15e-09;6!CL:0002087;9.25e-08;104!CL:0000738;3.63e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.37e-62,42;CL:0002057,4.37e-62,42;CL:0000766,1.78e-59,72;CL:0000473,1.28e-57,48;CL:0000234,1.28e-57,48;CL:0000557,4.84e-55,67;CL:0002194,5.61e-55,59;CL:0000576,5.61e-55,59;CL:0000040,5.61e-55,59;CL:0000559,5.61e-55,59;CL:0000839,4.71e-54,66;CL:0002009,1.30e-52,61;CL:0000763,1.86e-34,108;CL:0000049,1.86e-34,108;CL:0000738,1.71e-24,136;CL:0002087,3.68e-22,115;CL:0002031,8.05e-22,120;CL:0000037,5.34e-18,168;CL:0000988,1.13e-17,177;CL:0002032,5.23e-17,161;CL:0000837,5.23e-17,161;CL:0002393,1.01e-13,9;CL:0002397,1.01e-13,9;CL:0000134,3.03e-07,354;CL:0002320,4.14e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;3.26e-44;42!CL:0000049;8.55e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!7.70e-27!80;UBERON:0002390!1.07e-25!102;UBERON:0003061!1.07e-25!102;UBERON:0002193!3.15e-25!112;UBERON:0001474!3.16e-24!86;UBERON:0002405!7.45e-19!115;UBERON:0004765!2.07e-18!101;UBERON:0001434!2.07e-18!101;UBERON:0003081!3.59e-16!216;UBERON:0000467!5.67e-12!625;UBERON:0000480!9.41e-12!626;UBERON:0000468!1.07e-11!659;UBERON:0000062!2.71e-11!511;UBERON:0000923!1.67e-08!604;UBERON:0005291!1.67e-08!604;UBERON:0006598!1.67e-08!604;UBERON:0002532!1.67e-08!604;UBERON:0002050!2.54e-08!605;UBERON:0005423!2.54e-08!605;UBERON:0000922!2.57e-08!612;UBERON:0000926!4.37e-08!448;UBERON:0004120!4.37e-08!448;UBERON:0006603!4.37e-08!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.56e-50,76;UBERON:0002390,8.74e-46,98;UBERON:0003061,8.74e-46,98;UBERON:0001474,4.06e-45,82;UBERON:0002193,2.26e-42,108;UBERON:0002405,2.04e-40,93;UBERON:0004765,1.95e-39,90;UBERON:0001434,1.24e-33,100;UBERON:0003081,1.44e-25,203;UBERON:0002204,7.84e-14,167;UBERON:0000926,3.59e-12,315;UBERON:0004120,3.59e-12,315;UBERON:0006603,3.59e-12,315 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0.446961094427288,0,0,0,0.261185628199839,0,0.697801167972428,0.436882744260345,0.527533956456907,0.123766352960047,0,0,0,0,0,0.246242116153576,0.816002764977012,0.626909442956176,0.286235987131057,0.273748850145768,0.251085279189606,0,0,0,8.26064981382698,3.0706351847777,7.1215416725395,0,0.30120591877825,0.369754010166788,0,0,2.93600439334847,4.9859586767869,3.60980005446255,5.4252717678963,1.79132379391939,0.971680998056939,1.03030227053675,3.19876125315042,3.77875943688809,3.15359279544161,3.71886459049095,2.46700732813095,5.26500830521676,7.19230980805376,6.14785695669842,5.91205574721463,8.61864201841546,3.22742341791913,13.5426486594342,3.57660445130949,3.82068610080984,3.37085226667627,10.7129362329816,7.06043859567406,6.39337125799041,4.61791820261403,6.38283704389222,4.68847225585964,15.0908804086864,6.24123747160254,9.34233373493363,4.27122730936464,3.12889751052121,6.73285418585862,8.47559303686716,8.83866326370155,14.2408074348398,2.32380814943136,2.97646019951061,3.98351426465914,2.2465726229299,1.80212271409808,2.73233497385036,3.70516566863623,3.38158351238453,2.19196984517561,0,0.546138611262131,0,0.426730222566507,0,0,0,0,0,0.587237189370939,0,1.32171328579026,2.24203425192614,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.661743720148475,0.665188192387692,0.87834785693126,0.458426764241994,0.728590576585084,0,0.649094787309367,1.0447784237956,1.06366368415092,0.476981248610684,0,0,0.198762407366705,0,0.347140501607594,0.56530794192401,0,0.550236083880135,0.626984899610432,0.258416759169329,1.06729878806013,0.33472061276467,1.20848795132744,0.760272105718513,0.732186172644509,0,1.62028389576352,0.535798369704479,0.22452937262617,0.563057402416611,1.53316637465883,0,0.732806975721629,1.31780417436063,0,0,0,0.12663051166458,0.397227542439656,0.286836620748814,0,0,0,0.24666754841716,0.311211035399766,0.404132016209064,0.163461903113459,0.454072282934794,0,0.70296429550139,0.936480230490962,0.570471821544449,0.149448680551801,0.117434498643765,0.161872944368132,0.140450806702248,0,0.245668634623536,0.413303124703062,0,0.494533858557114,0,0.718618141816238,0.336672227908132,0.125118519871964,0,0.438977620880838,0,0,0,0.538168907066586,0.640672166455702,0,0.600182192168805,0.206105058476878,1.8034837803194,0.558350568994769,0.168776332241266,0.292311015483596,0.252433774244115,0,0.484938170456436,1.42003837006646,0.302256294682921,0.169560592310488,0,0,0.286804595389004,0,0.132529768321485,0.232387885739037,0.414644220061482,0.756962552626885,0,0,1.92972281457866,2.76269842704961,0.464367928031979,0,0.709840800239063,0.337169380156203,0.241011029883482,1.10293972732394,0.217879444092406,0.237270619111097,1.21348177344148,0.392442930250692,1.15424147083917,1.4763109092493,0,0,0,1.26755034821831,0,0.590789906681404,0,0.122988438543114,0.686271241194102,0,0,0.100528972411631,0.185176890317059,0.651616610620649,0,0,1.04337364477569,0.469634776943287,0.433099343283221,0.925971025153221,1.14152491340759,2.37061319387782,0.858486162094873,0.738651018262192,0.234004265139238,0.445893486866185,0,0,0.283550194484773,0.268675568108545,0.290633938513962,1.15014803749563,0,0.352193736052904,1.86595303986695,3.45887888200707,1.64115163454294,0.825472625798197,0.763976851116555,0,1.71072446022705,0.514137463516618,0.300343057843917,0.285826432630578,0.112131084345361,0,0.22001485746285,0.258543431515556,3.57656445851882,0,0.26593811658487,2.08014873822732,1.02882949704857,0,0.266422179016099,0.142977993658148,0,2.46972101034231,0.325736184293735,0.710783897485092,0.791951872933429,0,0,0.299918973546171,2.43247561282381,1.50677127429638,0,0,0,0,0,0,0.358121926479791,0,0.197030760201927,0,0.256686072559497,0,0,0,0.335032530668698,0,0.749007023947182,0,1.65766205374414,0.24538298343828,0,0.271265023699736,1.03985430765404,0,0.630809660135739,0.234282829985426,0.300946099727719,4.5481500811197,0,0.664225598535437,0.184369168541703,0.260650843404249,1.37060810223918,0,0.620304078368662,2.15714200818617,1.06727557803444,0.606255142892519,1.66435439510497,1.20956117331872,0,0.767309866440312,0,0,1.53512174720011,0.321707842287215,0,0.154209693802656,0.177561725313127,0.0821271560138091,0,0,0.120859449591622,0,0.0920809889358963,0.229628896329213,0,0.393373244878272,0.451199612907412,0.693138033939733,0,0,0.422206515571503,2.27466768141793,0.680374821106063,0.431831832204279,1.54227252690289,0,1.50506932156456,0.509752546090077,0.831076008928724,1.11937377361089,0,0.261435451024901,0.769350375349168,1.64007322849853,0.325378394664303,0.309123034943167,0.54941678891006,0.660075999364704,0,0.650060246036521,0,0,0,0,0,0.429680979473094,0,0.0852266274161009,0.445160178233687,0.330569830721956,0.384380134730212,1.65896526242959,0.2023155617111,0.464845549297286,0.31481234683064,0.6970372701606,0.308033580176089,0.532306030317022,0.869932992075073,0.1853242191039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| |||
|short_description=p2@TREX1 | |||
}} |
Revision as of 18:48, 21 January 2014
Short description: | p2@TREX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TREX1_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000422277, ENST00000436480, NM_016381, NM_033629, uc010hka.2_5end |
EntrezGene: | TREX1 |
HGNC: | 12269 |
UniProt: | Q9NSU2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.37e-62 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.37e-62 | 42 |
myeloid leukocyte | 1.78e-59 | 72 |
defensive cell | 1.28e-57 | 48 |
phagocyte | 1.28e-57 | 48 |
granulocyte monocyte progenitor cell | 4.84e-55 | 67 |
monopoietic cell | 5.61e-55 | 59 |
monocyte | 5.61e-55 | 59 |
monoblast | 5.61e-55 | 59 |
promonocyte | 5.61e-55 | 59 |
myeloid lineage restricted progenitor cell | 4.71e-54 | 66 |
macrophage dendritic cell progenitor | 1.30e-52 | 61 |
myeloid cell | 1.86e-34 | 108 |
common myeloid progenitor | 1.86e-34 | 108 |
leukocyte | 1.71e-24 | 136 |
nongranular leukocyte | 3.68e-22 | 115 |
hematopoietic lineage restricted progenitor cell | 8.05e-22 | 120 |
hematopoietic stem cell | 5.34e-18 | 168 |
hematopoietic cell | 1.13e-17 | 177 |
hematopoietic oligopotent progenitor cell | 5.23e-17 | 161 |
hematopoietic multipotent progenitor cell | 5.23e-17 | 161 |
intermediate monocyte | 1.01e-13 | 9 |
CD14-positive, CD16-positive monocyte | 1.01e-13 | 9 |
mesenchymal cell | 3.03e-07 | 354 |
connective tissue cell | 4.14e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.56e-50 | 76 |
hematopoietic system | 8.74e-46 | 98 |
blood island | 8.74e-46 | 98 |
bone element | 4.06e-45 | 82 |
hemolymphoid system | 2.26e-42 | 108 |
immune system | 2.04e-40 | 93 |
skeletal element | 1.95e-39 | 90 |
skeletal system | 1.24e-33 | 100 |
lateral plate mesoderm | 1.44e-25 | 203 |
musculoskeletal system | 7.84e-14 | 167 |
mesoderm | 3.59e-12 | 315 |
mesoderm-derived structure | 3.59e-12 | 315 |
presumptive mesoderm | 3.59e-12 | 315 |