FFCP PHASE1:Hg19::chr9:73479427..73479440,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=80036 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=17992 | |||
|TSSclassifier=not | |||
|UniProt=Q8TBK0 | |||
|association_with_transcript=0bp_to_BC022454_5end | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_12_at_TRPM3_5end | |||
|id=chr9:73479427..73479440,- | |||
|ontology_enrichment_celltype=CL:0002586!1.73e-10!3;CL:0000064!6.40e-10!3;CL:0005012!6.40e-10!3;CL:0000067!6.40e-10!3;CL:0002304!6.40e-10!3;CL:0000149!5.92e-08!4 | |||
|ontology_enrichment_celltype_v019=CL:0002586;2.74e-12;3!CL:0000149;1.50e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,3.24e-12,3;CL:0000149,1.70e-09,4 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.85e-12;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003075!2.75e-30!86;UBERON:0007284!2.75e-30!86;UBERON:0002346!1.45e-28!90;UBERON:0005743!6.84e-28!86;UBERON:0001049!1.68e-26!57;UBERON:0005068!1.68e-26!57;UBERON:0006241!1.68e-26!57;UBERON:0007135!1.68e-26!57;UBERON:0000073!2.58e-26!94;UBERON:0001016!2.58e-26!94;UBERON:0000033!1.78e-24!123;UBERON:0002616!4.95e-23!59;UBERON:0000153!6.49e-23!129;UBERON:0007811!6.49e-23!129;UBERON:0003056!2.79e-22!61;UBERON:0001017!1.96e-21!82;UBERON:0000955!1.89e-20!69;UBERON:0006238!1.89e-20!69;UBERON:0004121!5.56e-20!169;UBERON:0000924!2.72e-19!173;UBERON:0006601!2.72e-19!173;UBERON:0002298!5.03e-18!8;UBERON:0004733!1.05e-15!12;UBERON:0002028!1.05e-15!12;UBERON:0007277!1.05e-15!12;UBERON:0003076!1.12e-15!15;UBERON:0003057!1.12e-15!15;UBERON:0002780!2.06e-14!41;UBERON:0001890!2.06e-14!41;UBERON:0006240!2.06e-14!41;UBERON:0004732!2.21e-14!13;UBERON:0003080!5.48e-14!42;UBERON:0007625!2.16e-13!11;UBERON:0002020!2.96e-13!34;UBERON:0003528!2.96e-13!34;UBERON:0002791!9.78e-12!33;UBERON:0000970!1.80e-11!20;UBERON:0001893!2.56e-11!34;UBERON:0007023!3.25e-11!115;UBERON:0000966!6.22e-11!5;UBERON:0005388!6.22e-11!5;UBERON:0001802!6.22e-11!5;UBERON:0002104!7.71e-11!21;UBERON:0001781!1.73e-10!3;UBERON:0001782!1.73e-10!3;UBERON:0005424!1.73e-10!3;UBERON:0001896!1.90e-10!3;UBERON:0005290!1.90e-10!3;UBERON:0010096!1.90e-10!3;UBERON:0001872!3.24e-10!5;UBERON:0001778!6.40e-10!3;UBERON:0001775!6.40e-10!3;UBERON:0000020!9.68e-10!23;UBERON:0000019!1.33e-09!19;UBERON:0000047!1.33e-09!19;UBERON:0004088!1.33e-09!19;UBERON:0003072!1.33e-09!19;UBERON:0003071!1.33e-09!19;UBERON:0004128!1.33e-09!19;UBERON:0006331!1.59e-09!3;UBERON:0000988!1.79e-09!3;UBERON:0000956!1.97e-09!25;UBERON:0000203!1.97e-09!25;UBERON:0001032!2.92e-09!24;UBERON:0004456!2.92e-09!24;UBERON:0002619!9.63e-09!22;UBERON:0001456!1.50e-08!21;UBERON:0001869!1.51e-08!32;UBERON:0002680!1.72e-08!9;UBERON:0001895!1.72e-08!9;UBERON:0010092!1.72e-08!9;UBERON:0001950!1.03e-07!20;UBERON:0001897!1.24e-07!2;UBERON:0000488!1.55e-07!4;UBERON:0002148!6.12e-07!2;UBERON:0009662!6.12e-07!2;UBERON:0000064!6.76e-07!219;UBERON:0000475!8.88e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0001896;1.09e-44;3!UBERON:0005290;1.09e-44;3!UBERON:0000966;2.22e-27;5!UBERON:0005388;2.22e-27;5!UBERON:0001802;2.22e-27;5!UBERON:0002298;5.74e-23;6!UBERON:0001781;2.74e-12;3!UBERON:0001782;2.74e-12;3!UBERON:0004733;4.94e-12;12!UBERON:0002028;4.94e-12;12!UBERON:0004732;3.47e-11;13!UBERON:0000019;5.63e-08;19!UBERON:0000047;5.63e-08;19!UBERON:0004088;5.63e-08;19!UBERON:0010230;5.63e-08;19!UBERON:0000970;1.27e-07;20!UBERON:0002104;2.64e-07;21!UBERON:0001456;2.64e-07;21!UBERON:0000020;9.53e-07;23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,9.77e-45,3;UBERON:0005290,9.77e-45,3;UBERON:0010096,9.77e-45,3;UBERON:0002298,5.43e-23,6;UBERON:0000966,6.07e-23,6;UBERON:0005388,6.07e-23,6;UBERON:0001802,6.07e-23,6;UBERON:0001782,3.24e-12,3;UBERON:0005424,3.24e-12,3;UBERON:0004733,4.80e-12,12;UBERON:0002028,4.80e-12,12;UBERON:0007277,4.80e-12,12;UBERON:0004732,3.38e-11,13;UBERON:0003076,7.75e-10,15;UBERON:0003057,7.75e-10,15;UBERON:0001781,1.70e-09,4;UBERON:0000019,1.33e-07,20;UBERON:0000047,1.33e-07,20;UBERON:0010312,1.33e-07,20;UBERON:0004088,1.33e-07,20;UBERON:0010230,1.33e-07,20;UBERON:0003072,1.33e-07,20;UBERON:0004128,1.33e-07,20;UBERON:0003071,1.33e-07,20;UBERON:0000970,2.77e-07,21;UBERON:0002104,2.77e-07,21;UBERON:0001456,5.40e-07,22;UBERON:0003075,6.43e-07,82;UBERON:0007284,6.43e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.472674085820339,0.443458794925128,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0.408308342509787,0,0.206651562351531,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579652024875384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0.773288812777695,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,1.02580050046556,0.328014645699706,0.325378394664303,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.663475559587348,0.886642856860642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18608451472249,0.123563938946503,0,0.202203398942031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0.2249738915515,0,0.0607495566580247,0,0.236417121897595,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471162288750703,0,0,0.1251909307065,2.29363678276028,1.22021956690538,0.124192805882767,1.66018361923477,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781078098613847,0.206686796501184,0,0.546974809018219,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0.135939465953663,0.0657727735628491,0,0,0,0,0,0,0,0,4.50302228312935,0,0,0,0,0,0,0,0,0,0,0.846774100381858,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8453114551668,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0.829169439458779,0.413731983447581,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p12@TRPM3 | |||
}} |
Revision as of 01:39, 23 January 2014
Short description: | p12@TRPM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_12_at_TRPM3_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | 0bp_to_BC022454_5end |
EntrezGene: | TRPM3 |
HGNC: | 17992 |
UniProt: | Q8TBK0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 3.24e-12 | 3 |
visual pigment cell | 1.70e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 9.77e-45 | 3 |
myelencephalon | 9.77e-45 | 3 |
future myelencephalon | 9.77e-45 | 3 |
brainstem | 5.43e-23 | 6 |
retina | 6.07e-23 | 6 |
photoreceptor array | 6.07e-23 | 6 |
posterior segment of eyeball | 6.07e-23 | 6 |
pigmented layer of retina | 3.24e-12 | 3 |
presumptive retinal pigmented epithelium | 3.24e-12 | 3 |
segmental subdivision of hindbrain | 4.80e-12 | 12 |
hindbrain | 4.80e-12 | 12 |
presumptive hindbrain | 4.80e-12 | 12 |
segmental subdivision of nervous system | 3.38e-11 | 13 |
posterior neural tube | 7.75e-10 | 15 |
chordal neural plate | 7.75e-10 | 15 |
layer of retina | 1.70e-09 | 4 |
camera-type eye | 1.33e-07 | 20 |
simple eye | 1.33e-07 | 20 |
immature eye | 1.33e-07 | 20 |
ocular region | 1.33e-07 | 20 |
eyeball of camera-type eye | 1.33e-07 | 20 |
optic cup | 1.33e-07 | 20 |
optic vesicle | 1.33e-07 | 20 |
eye primordium | 1.33e-07 | 20 |
eye | 2.77e-07 | 21 |
visual system | 2.77e-07 | 21 |
face | 5.40e-07 | 22 |
neural plate | 6.43e-07 | 82 |
presumptive neural plate | 6.43e-07 | 82 |