Personal tools

CL:0002605: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002605
|alt_id=
|name=astrocyte of the cerebral cortex
|namespace=cell
|def="An astrocyte of the cerebral cortex." [GOC:tfm]
|xref=
|is_a=CL:0000127
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T06:57:36Z
|def="An astrocyte of the cerebral cortex." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002605
|is_a=CL:0012000 ;;CL:1001579
|is_obsolete=
|located_in=
|located_in=
|name=astrocyte of the cerebral cortex
|namespace=cell
|obo_creation_date=2011-03-06T06:57:36Z
|part_of=UBERON:0000956
|part_of=UBERON:0000956
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:30, 12 September 2014

Name:astrocyte of the cerebral cortex
Namespace:cell
Definition:"An astrocyte of the cerebral cortex." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T06:57:36Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0012000(astrocyte of the forebrain),CL:1001579(cerebral cortex glial cell)
part_of:UBERON:0000956(cerebral cortex)



Children


derives from:FF:0000194 (human astrocyte of the cerebral cortex sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002605 (astrocyte of the cerebral cortex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.79e-195FFCP PHASE2:Hg19::chr9:122602283..122602290,-#_9af87a90ffb30d85c2c0d37fd17ea96ap@chr9:122602283..122602290, -
2.79e-195FFCP PHASE1:Hg19::chr9:122602283..122602290,-#_9af87a90ffb30d85c2c0d37fd17ea96ap@chr9:122602283..122602290, -
8.98e-131FFCP PHASE2:Hg19::chr8:32488262..32488265,+#_907b7fa2f70f494c907566ca43924c91p@chr8:32488262..32488265, +
8.98e-131FFCP PHASE1:Hg19::chr8:32488262..32488265,+#_907b7fa2f70f494c907566ca43924c91p@chr8:32488262..32488265, +
3.48e-118FFCP PHASE2:Hg19::chr7:42192092..42192108,-#_6ecc9e18c048ac0bfef1df86023d4e51p13@GLI3
3.48e-118FFCP PHASE1:Hg19::chr7:42192092..42192108,-#_6ecc9e18c048ac0bfef1df86023d4e51p13@GLI3
7.78e-118FFCP PHASE2:Hg19::chr4:169553987..169553999,+#_5149c712f719a09789019cfc4b64388cp@chr4:169553987..169553999, +
7.78e-118FFCP PHASE1:Hg19::chr4:169553987..169553999,+#_5149c712f719a09789019cfc4b64388cp@chr4:169553987..169553999, +
1.16e-117FFCP PHASE2:Hg19::chr20:35856764..35856768,+#_226832821782c1e7a9547a70a9d4ad48p25@RPN2
1.16e-117FFCP PHASE1:Hg19::chr20:35856764..35856768,+#_226832821782c1e7a9547a70a9d4ad48p25@RPN2
2.59e-117FFCP PHASE1:Hg19::chr14:33403217..33403226,+#_56e00156059fc78bec079484535eb0fap@chr14:33403217..33403226, +
2.59e-117FFCP PHASE2:Hg19::chr14:33403217..33403226,+#_56e00156059fc78bec079484535eb0fap@chr14:33403217..33403226, +
1.11e-98FFCP PHASE2:Hg19::chr9:127025189..127025200,+#_beca657f4c96c31bb4e93f95811418a4p1@ENST00000437461
1.11e-98FFCP PHASE1:Hg19::chr9:127025189..127025200,+#_beca657f4c96c31bb4e93f95811418a4p1@ENST00000437461
1.55e-98FFCP PHASE2:Hg19::chr2:104096987..104096993,-#_a53185a19cf3122b255a4448601fa00ap@chr2:104096987..104096993, -
1.55e-98FFCP PHASE2:Hg19::chr13:99349888..99349893,+#_a53185a19cf3122b255a4448601fa00ap@chr13:99349888..99349893, +
1.55e-98FFCP PHASE1:Hg19::chr13:99349888..99349893,+#_a53185a19cf3122b255a4448601fa00ap@chr13:99349888..99349893, +
1.55e-98FFCP PHASE1:Hg19::chr2:104096987..104096993,-#_a53185a19cf3122b255a4448601fa00ap@chr2:104096987..104096993, -
1.87e-86FFCP PHASE1:Mm9::chr9:122478206..122478208,+#_61a344364b98374db25abbc4f43be7d1p@chr9:122478206..122478208, +
1.87e-86FFCP PHASE2:Mm9::chr9:122478206..122478208,+#_61a344364b98374db25abbc4f43be7d1p@chr9:122478206..122478208, +
1.87e-86FFCP PHASE1:Mm9::chr1:72827387..72827393,-#_61a344364b98374db25abbc4f43be7d1p@chr1:72827387..72827393, -
1.87e-86FFCP PHASE2:Mm9::chr1:72827387..72827393,-#_61a344364b98374db25abbc4f43be7d1p@chr1:72827387..72827393, -
9.61e-85FFCP PHASE1:Hg19::chr18:59139514..59139535,+#_1b12f62ba3e92fcc6bcb8b895cf599aap@chr18:59139514..59139535, +
9.61e-85FFCP PHASE2:Hg19::chr18:59139514..59139535,+#_1b12f62ba3e92fcc6bcb8b895cf599aap@chr18:59139514..59139535, +
6.07e-75FFCP PHASE2:Hg19::chr17:42988599..42988605,-#_b16853a8dfbdfa621295772c2a7e9d28p46@GFAP
6.07e-75FFCP PHASE1:Hg19::chr17:42988599..42988605,-#_b16853a8dfbdfa621295772c2a7e9d28p46@GFAP
2.14e-74FFCP PHASE2:Hg19::chr18:56248051..56248065,-#_8e44abeb4ff7cc62578081329110e8aep@chr18:56248051..56248065, -
2.14e-74FFCP PHASE1:Hg19::chr18:56248051..56248065,-#_8e44abeb4ff7cc62578081329110e8aep@chr18:56248051..56248065, -
7.85e-67FFCP PHASE2:Hg19::chr4:169553961..169553972,+#_a7c8a953625fc55f13be9377e1032381p@chr4:169553961..169553972, +
7.85e-67FFCP PHASE1:Hg19::chr4:169553961..169553972,+#_a7c8a953625fc55f13be9377e1032381p@chr4:169553961..169553972, +
9.82e-67FFCP PHASE2:Hg19::chr1:98518907..98518920,+#_330a4f6d944935b385324b3234495f7cp@chr1:98518907..98518920, +
9.82e-67FFCP PHASE1:Hg19::chr1:98518907..98518920,+#_330a4f6d944935b385324b3234495f7cp@chr1:98518907..98518920, +
1.54e-66FFCP PHASE2:Hg19::chr1:98642833..98642844,+#_a04a882039e18906f5ccc49e75b4cce5p@chr1:98642833..98642844, +
1.54e-66FFCP PHASE1:Hg19::chr1:98642833..98642844,+#_a04a882039e18906f5ccc49e75b4cce5p@chr1:98642833..98642844, +
2.39e-66FFCP PHASE2:Hg19::chr1:19212524..19212526,-#_0ef43b83c955ed65639f4caca7f88a9dp6@ALDH4A1
2.39e-66FFCP PHASE1:Hg19::chr1:19212524..19212526,-#_0ef43b83c955ed65639f4caca7f88a9dp6@ALDH4A1
4.68e-66FFCP PHASE2:Hg19::chr21:17566746..17566756,+#_233ef4973150d4d0474fa379b7de9524p35@LINC00478
4.68e-66FFCP PHASE1:Hg19::chr21:17566746..17566756,+#_233ef4973150d4d0474fa379b7de9524p35@LINC00478
1.15e-65FFCP PHASE1:Hg19::chr17:76266212..76266222,-#_74c2e7486c5c9ea650a389a54e909383p@chr17:76266212..76266222, -
1.15e-65FFCP PHASE2:Hg19::chr17:76266212..76266222,-#_74c2e7486c5c9ea650a389a54e909383p@chr17:76266212..76266222, -
1.22e-59FFCP PHASE2:Hg19::chr20:20472232..20472244,-#_78938434be8f92c892d02b5fb330431dp@chr20:20472232..20472244, -
1.22e-59FFCP PHASE1:Hg19::chr20:20472232..20472244,-#_78938434be8f92c892d02b5fb330431dp@chr20:20472232..20472244, -
2.23e-59FFCP PHASE2:Hg19::chr5:135540733..135540788,-#_453bd04b20e4dde95a2559bda90d0f2fp@chr5:135540733..135540788, -
2.23e-59FFCP PHASE1:Hg19::chr5:135540733..135540788,-#_453bd04b20e4dde95a2559bda90d0f2fp@chr5:135540733..135540788, -
1.68e-58FFCP PHASE1:Mm9::chr11:66340488..66340520,-#_af073de32d751f16f9e423c3f72e0dcdp@chr11:66340488..66340520, -
1.68e-58FFCP PHASE1:Mm9::chr1:169619239..169619257,+#_af073de32d751f16f9e423c3f72e0dcdp4@Lmx1a
1.68e-58FFCP PHASE2:Mm9::chr11:66340488..66340520,-#_af073de32d751f16f9e423c3f72e0dcdp@chr11:66340488..66340520, -
1.68e-58FFCP PHASE1:Mm9::chr12:86222392..86222395,-#_af073de32d751f16f9e423c3f72e0dcdp@chr12:86222392..86222395, -
1.68e-58FFCP PHASE2:Mm9::chr1:135936902..135936908,+#_af073de32d751f16f9e423c3f72e0dcdp@chr1:135936902..135936908, +
1.68e-58FFCP PHASE2:Mm9::chr1:169619239..169619257,+#_af073de32d751f16f9e423c3f72e0dcdp4@Lmx1a
1.68e-58FFCP PHASE2:Mm9::chr6:84135739..84135768,+#_af073de32d751f16f9e423c3f72e0dcdp@chr6:84135739..84135768, +
1.68e-58FFCP PHASE2:Mm9::chr14:70592586..70592593,-#_af073de32d751f16f9e423c3f72e0dcdp@chr14:70592586..70592593, -
1.68e-58FFCP PHASE1:Mm9::chr6:84135739..84135768,+#_af073de32d751f16f9e423c3f72e0dcdp@chr6:84135739..84135768, +
1.68e-58FFCP PHASE1:Mm9::chr14:70592586..70592593,-#_af073de32d751f16f9e423c3f72e0dcdp@chr14:70592586..70592593, -
1.68e-58FFCP PHASE2:Mm9::chr12:86222392..86222395,-#_af073de32d751f16f9e423c3f72e0dcdp@chr12:86222392..86222395, -
1.68e-58FFCP PHASE1:Mm9::chr1:135936902..135936908,+#_af073de32d751f16f9e423c3f72e0dcdp@chr1:135936902..135936908, +
1.68e-58FFCP PHASE1:Mm9::chr16:15895817..15895825,-#_af073de32d751f16f9e423c3f72e0dcdp@chr16:15895817..15895825, -
1.68e-58FFCP PHASE2:Mm9::chr16:15895817..15895825,-#_af073de32d751f16f9e423c3f72e0dcdp@chr16:15895817..15895825, -
2.88e-55FFCP PHASE2:Hg19::chr1:98518880..98518891,+#_ad872051f5c138dcdc13071dc5034eb8p@chr1:98518880..98518891, +
2.88e-55FFCP PHASE1:Hg19::chr1:98518880..98518891,+#_ad872051f5c138dcdc13071dc5034eb8p@chr1:98518880..98518891, +
4.17e-55FFCP PHASE2:Hg19::chr11:35125088..35125100,-#_a6de29737a98c5e6af8d71aaa1c56c6cp@chr11:35125088..35125100, -
4.17e-55FFCP PHASE1:Hg19::chr11:35125088..35125100,-#_a6de29737a98c5e6af8d71aaa1c56c6cp@chr11:35125088..35125100, -
7.24e-55FFCP PHASE1:Hg19::chr2:104490710..104490719,+#_5908d39cdef71a103d142a462406e126p2@ENST00000537492
7.24e-55FFCP PHASE2:Hg19::chr2:104490710..104490719,+#_5908d39cdef71a103d142a462406e126p2@ENST00000537492
3.76e-54FFCP PHASE2:Hg19::chr11:30605486..30605499,-#_5adfa352ce938f45eff0f863ce60380bp@chr11:30605486..30605499, -
3.76e-54FFCP PHASE1:Hg19::chr11:30605486..30605499,-#_5adfa352ce938f45eff0f863ce60380bp@chr11:30605486..30605499, -
3.75e-53FFCP PHASE1:Hg19::chr14:33403278..33403307,+#_5dd821ad6b1bd387bdba3e8700bad0a5p@chr14:33403278..33403307, +
3.75e-53FFCP PHASE2:Hg19::chr14:33403278..33403307,+#_5dd821ad6b1bd387bdba3e8700bad0a5p@chr14:33403278..33403307, +
1.89e-50FFCP PHASE1:Hg19::chr3:155422705..155422719,-#_4c281a3a2b5cfd1bccadc7f6b2f60c17p@chr3:155422705..155422719, -
1.89e-50FFCP PHASE2:Hg19::chr3:155422705..155422719,-#_4c281a3a2b5cfd1bccadc7f6b2f60c17p@chr3:155422705..155422719, -
3.7e-50FFCP PHASE2:Hg19::chr8:38260028..38260044,+#_a18c787104fd97f1301b50256b5f2211p@chr8:38260028..38260044, +
3.7e-50FFCP PHASE1:Hg19::chr8:38260028..38260044,+#_a18c787104fd97f1301b50256b5f2211p@chr8:38260028..38260044, +
1.67e-49FFCP PHASE2:Hg19::chr5:58295564..58295588,-#_ad6316ab12aa3e0613ee00a16d1e1b3ap59@PDE4D
1.67e-49FFCP PHASE2:Hg19::chr11:36127154..36127161,+#_ad6316ab12aa3e0613ee00a16d1e1b3ap@chr11:36127154..36127161, +
1.67e-49FFCP PHASE1:Hg19::chr11:36127154..36127161,+#_ad6316ab12aa3e0613ee00a16d1e1b3ap@chr11:36127154..36127161, +
1.67e-49FFCP PHASE1:Hg19::chr5:58295564..58295588,-#_ad6316ab12aa3e0613ee00a16d1e1b3ap59@PDE4D
1.03e-46FFCP PHASE1:Hg19::chr16:19297074..19297103,+#_1ba75d74f1d36acd043cd17f2a4e044ap1@CLEC19A
1.03e-46FFCP PHASE2:Hg19::chr16:19297074..19297103,+#_1ba75d74f1d36acd043cd17f2a4e044ap1@CLEC19A
1.65e-46FFCP PHASE2:Hg19::chr2:48919725..48919761,+#_2cf327b1a5fe9ce98f275b09ca87670ap@chr2:48919725..48919761, +
1.65e-46FFCP PHASE1:Hg19::chr2:48919725..48919761,+#_2cf327b1a5fe9ce98f275b09ca87670ap@chr2:48919725..48919761, +
4.17e-46FFCP PHASE2:Hg19::chr8:32604401..32604404,+#_2623fb0dd8965c14a15b6d90f319b69dp@chr8:32604401..32604404, +
4.17e-46FFCP PHASE1:Hg19::chr8:32604401..32604404,+#_2623fb0dd8965c14a15b6d90f319b69dp@chr8:32604401..32604404, +
7.81e-45FFCP PHASE2:Hg19::chr18:59139537..59139552,+#_8617ebd0f23b5404d1ceb1f5abed0551p@chr18:59139537..59139552, +
7.81e-45FFCP PHASE1:Hg19::chr18:59139537..59139552,+#_8617ebd0f23b5404d1ceb1f5abed0551p@chr18:59139537..59139552, +
1.22e-44FFCP PHASE2:Hg19::chr12:41374792..41374806,+#_1b0d2a1dcd38e68c4e4d5b5ab40d5e54p@chr12:41374792..41374806, +
1.22e-44FFCP PHASE1:Hg19::chr12:41374792..41374806,+#_1b0d2a1dcd38e68c4e4d5b5ab40d5e54p@chr12:41374792..41374806, +
1.66e-44FFCP PHASE2:Mm9::chr1:135937391..135937415,+#_4a112d491a254c374d0aca8bfe971bf2p@chr1:135937391..135937415, +
1.66e-44FFCP PHASE2:Mm9::chr9:43915826..43915844,+#_4a112d491a254c374d0aca8bfe971bf2p@chr9:43915826..43915844, +
1.66e-44FFCP PHASE2:Mm9::chr2:38207200..38207210,+#_4a112d491a254c374d0aca8bfe971bf2p13@Lhx2
1.66e-44FFCP PHASE1:Mm9::chr7:149885426..149885434,-#_4a112d491a254c374d0aca8bfe971bf2p2@Ins2
1.66e-44FFCP PHASE1:Mm9::chr1:135937391..135937415,+#_4a112d491a254c374d0aca8bfe971bf2p@chr1:135937391..135937415, +
1.66e-44FFCP PHASE2:Mm9::chr7:149885426..149885434,-#_4a112d491a254c374d0aca8bfe971bf2p2@Ins2
1.66e-44FFCP PHASE1:Mm9::chr9:43915826..43915844,+#_4a112d491a254c374d0aca8bfe971bf2p@chr9:43915826..43915844, +
1.66e-44FFCP PHASE1:Mm9::chr2:38207200..38207210,+#_4a112d491a254c374d0aca8bfe971bf2p13@Lhx2
2.75e-44FFCP PHASE2:Mm9::chr17:26758457..26758466,+#_2393f51fb2f98acd8c0885c5c0d52b29p10@Ergic1
2.75e-44FFCP PHASE1:Mm9::chr1:135808073..135808085,-#_2393f51fb2f98acd8c0885c5c0d52b29p@chr1:135808073..135808085, -
2.75e-44FFCP PHASE2:Mm9::chr1:135808073..135808085,-#_2393f51fb2f98acd8c0885c5c0d52b29p@chr1:135808073..135808085, -
2.75e-44FFCP PHASE1:Mm9::chr17:26758457..26758466,+#_2393f51fb2f98acd8c0885c5c0d52b29p10@Ergic1
2.97e-44FFCP PHASE2:Hg19::chr8:32436735..32436738,+#_70cc345f609dabdba6edf59451c8724cp@chr8:32436735..32436738, +
2.97e-44FFCP PHASE1:Hg19::chr8:32436735..32436738,+#_70cc345f609dabdba6edf59451c8724cp@chr8:32436735..32436738, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002605&oldid=3272212"