Personal tools

UBERON:0003852: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0003852 |name=rhombencephalon neural crest |namespace= |def= |xref=EHDAA2:0001628;;EHDAA:362;;TAO:0007063;;VHOG:0001210;;ZFA:0007063 |is_a=UBERON:000...")
 
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003852
|alt_id=
|name=rhombencephalon neural crest
|namespace=
|def=
|xref=EHDAA2:0001628;;EHDAA:362;;TAO:0007063;;VHOG:0001210;;ZFA:0007063
|is_a=UBERON:0002342
|synonym="neural crest hindbrain" EXACT [ZFA:0007063];;"rhombencephalic neural crest" EXACT [ZFA:0007063]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003852
|is_a=UBERON:0002342 ;;UBERON:0003099
|is_obsolete=
|located_in=
|located_in=
|name=rhombencephalon neural crest
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Cranial neural crest that is part of the hindbrain.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Cranial neural crest that is part of the hindbrain.[TAO]" xsd:string
|is_obsolete=
|subset=vertebrate_core
|preceded_by=
|synonym="neural crest hindbrain" EXACT [ZFA:0007063];;"rhombencephalic neural crest" EXACT [ZFA:0007063]
|union_of=
|xref=EHDAA2:0001628;;EHDAA:362;;TAO:0007063;;VHOG:0001210;;ZFA:0007063
}}
}}

Revision as of 11:25, 12 September 2014

Name:rhombencephalon neural crest
Xrefs:
links:

EHDAA2:0001628
EHDAA:362
TAO:0007063
VHOG:0001210

ZFA:0007063
Synonyms: "neural crest hindbrain" EXACT [ZFA:0007063]
"rhombencephalic neural crest" EXACT [ZFA:0007063]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002342(neural crest),UBERON:0003099(cranial neural crest)



Children

develops from:UBERON:0010258 (mesenchyme from rhombencephalic neural crest),UBERON:0010259 (1st arch mesenchyme from neural crest)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003852 (rhombencephalon neural crest), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_4eb56ccc91655258e3a16957387c06ccp14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_4eb56ccc91655258e3a16957387c06ccp14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_041c3dbb351e58fafb6afdc34b85d1fep13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_041c3dbb351e58fafb6afdc34b85d1fep13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_041c3dbb351e58fafb6afdc34b85d1fep@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_041c3dbb351e58fafb6afdc34b85d1fep12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_041c3dbb351e58fafb6afdc34b85d1fep12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_041c3dbb351e58fafb6afdc34b85d1fep@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_041c3dbb351e58fafb6afdc34b85d1fep11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_041c3dbb351e58fafb6afdc34b85d1fep11@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_98a5615ba8c3ee074c36a5e3c9fe52f9p14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_98a5615ba8c3ee074c36a5e3c9fe52f9p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_98a5615ba8c3ee074c36a5e3c9fe52f9p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_98a5615ba8c3ee074c36a5e3c9fe52f9p14@MAB21L2
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_e2b2889512fe7151ec98624f646005b5p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_e2b2889512fe7151ec98624f646005b5p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_6c8f7c2243bedd39a83da3ee52939694p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_6c8f7c2243bedd39a83da3ee52939694p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_6c8f7c2243bedd39a83da3ee52939694p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_6c8f7c2243bedd39a83da3ee52939694p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_6c8f7c2243bedd39a83da3ee52939694p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_6c8f7c2243bedd39a83da3ee52939694p17@RSRC1
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_473f4918197afe5c93113c1422a8ee7ap@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_473f4918197afe5c93113c1422a8ee7ap@chr8:57802672..57802682, -
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_17332b73083fcc0d60559f37b7327caap@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_17332b73083fcc0d60559f37b7327caap1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_17332b73083fcc0d60559f37b7327caap@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_17332b73083fcc0d60559f37b7327caap1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_17332b73083fcc0d60559f37b7327caap7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_17332b73083fcc0d60559f37b7327caap7@ALX1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_513d59a1b933d87dd4219acd0f3226a1p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_513d59a1b933d87dd4219acd0f3226a1p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_513d59a1b933d87dd4219acd0f3226a1p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_513d59a1b933d87dd4219acd0f3226a1p23@FLT1
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_9604bcbfd767c7d345b0af898fd5abfap@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_9604bcbfd767c7d345b0af898fd5abfap@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_9604bcbfd767c7d345b0af898fd5abfap@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_9604bcbfd767c7d345b0af898fd5abfap@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_9604bcbfd767c7d345b0af898fd5abfap@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_9604bcbfd767c7d345b0af898fd5abfap@chr8:57353666..57353675, -
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_a6029a129a1ed07c86486ddb67ede5f6p8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_a6029a129a1ed07c86486ddb67ede5f6p12@FAM65C
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_a6029a129a1ed07c86486ddb67ede5f6p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_a6029a129a1ed07c86486ddb67ede5f6p2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_a6029a129a1ed07c86486ddb67ede5f6p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_a6029a129a1ed07c86486ddb67ede5f6p2@TAS1R1
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_5611f8b5860773a793e779668f0b1e3cp@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_5611f8b5860773a793e779668f0b1e3cp@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_5611f8b5860773a793e779668f0b1e3cp@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_5611f8b5860773a793e779668f0b1e3cp@chr5:75912831..75912842, -
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_7272474a92efad6d55ac0103443a9825p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_7272474a92efad6d55ac0103443a9825p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_7272474a92efad6d55ac0103443a9825p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_7272474a92efad6d55ac0103443a9825p@chr9:125165007..125165016, +
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_f80e6a0b21f51ceae77f96d8027b5b47p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_f80e6a0b21f51ceae77f96d8027b5b47p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_f80e6a0b21f51ceae77f96d8027b5b47p5@PENK
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_f80e6a0b21f51ceae77f96d8027b5b47p4@CPZ
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_f80e6a0b21f51ceae77f96d8027b5b47p4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_f80e6a0b21f51ceae77f96d8027b5b47p5@PENK
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_90ad2fa9a23afade21924050b100bd7ep9@SIX1
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_90ad2fa9a23afade21924050b100bd7ep9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_fb2a10ebe51524f21c49a2cde0cede5ep@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_fb2a10ebe51524f21c49a2cde0cede5ep@chr6:134327986..134327991, -
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_fdc4d074be5008edc0d7cc11c3dd43f8p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_fdc4d074be5008edc0d7cc11c3dd43f8p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_fdc4d074be5008edc0d7cc11c3dd43f8p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_fdc4d074be5008edc0d7cc11c3dd43f8p@chr13:58291223..58291226, +
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_f78761e1327d88b526b5a97fc742b8dbp4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_f78761e1327d88b526b5a97fc742b8dbp12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_f78761e1327d88b526b5a97fc742b8dbp@chr5:19721484..19721507, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_f78761e1327d88b526b5a97fc742b8dbp4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_f78761e1327d88b526b5a97fc742b8dbp12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_f78761e1327d88b526b5a97fc742b8dbp@chr5:19721484..19721507, -
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_ecd92d588f401741b0da33ef048de6e9p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_ecd92d588f401741b0da33ef048de6e9p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_ecd92d588f401741b0da33ef048de6e9p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_ecd92d588f401741b0da33ef048de6e9p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_ecd92d588f401741b0da33ef048de6e9p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_ecd92d588f401741b0da33ef048de6e9p@chr8:57354360..57354367, +
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_beeb77c190ba46fbd418b0e33879f05bp7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_beeb77c190ba46fbd418b0e33879f05bp10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_beeb77c190ba46fbd418b0e33879f05bp10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_beeb77c190ba46fbd418b0e33879f05bp7@SHOX2
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_3b6a1f218a6246abc8274a82baa95f14p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_3b6a1f218a6246abc8274a82baa95f14p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_3b6a1f218a6246abc8274a82baa95f14p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_3b6a1f218a6246abc8274a82baa95f14p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_3b6a1f218a6246abc8274a82baa95f14p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_3b6a1f218a6246abc8274a82baa95f14p@chrX:132670143..132670152, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_a6a3e17471ee232e7cd6555a9f636a0ep@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_a6a3e17471ee232e7cd6555a9f636a0ep@chr1:21904551..21904569, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_8f83b5f57cf8df5d24b8d8e501512fc2p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_8f83b5f57cf8df5d24b8d8e501512fc2p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_8f83b5f57cf8df5d24b8d8e501512fc2p18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_8f83b5f57cf8df5d24b8d8e501512fc2p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_8f83b5f57cf8df5d24b8d8e501512fc2p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_8f83b5f57cf8df5d24b8d8e501512fc2p@chr8:57359975..57359992, -
4.2e-29FFCP PHASE2:Hg19::chr1:6615468..6615485,+#_d6c6e1e7bdf2e86e6ff92746a2623125p1@TAS1R1
4.2e-29FFCP PHASE1:Hg19::chr4:151503350..151503358,+#_d6c6e1e7bdf2e86e6ff92746a2623125p11@MAB21L2










Property "Property value" (as page type) with input value "UBPROP:0000001 "Cranial neural crest that is part of the hindbrain.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003852&oldid=3274268"