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{{CL
{{CL
|id=CL:0000650
|alt_id=
|name=mesangial cell
|namespace=cell
|def="A cell type that encapsulates the capillaries and venules in the kidney. This cell secretes mesangial matrix that provides the structural support for the capillaries." [GOC:tfm, http://www.copewithcytokines.de/cope.cgi?key=mesangial cells]
|xref=BTO:0000853;;FMA:70972
|is_a=CL:0000669
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell type that encapsulates the capillaries and venules in the kidney. This cell secretes mesangial matrix that provides the structural support for the capillaries." [GOC:tfm, http://www.copewithcytokines.de/cope.cgi?key
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=CL:0000134
|develops_from=CL:0000134
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000650
|is_a=CL:0000669
|is_obsolete=
|located_in=
|located_in=
|name=mesangial cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=BTO:0000853;;FMA:70972
}}
}}

Latest revision as of 16:35, 12 September 2014

Name:mesangial cell
Namespace:FANTOM
Definition:"A cell type that encapsulates the capillaries and venules in the kidney. This cell secretes mesangial matrix that provides the structural support for the capillaries." [GOC:tfm, http://www.copewithcytokines.de/cope.cgi?key
Xrefs:
links:

BTO:0000853

FMA:70972


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000669(pericyte cell)
develops_from:CL:0000134(mesenchymal cell)



Children


is a:CL:0002173 (extraglomerular mesangial cell)
derives from:FF:0000154 (human renal mesangial cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000650 (mesangial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.34e-79FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_61a0c4d9261aa0425ffb7a5af6e0f17dp@chr2:133426030..133426041, -
2.34e-79FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_61a0c4d9261aa0425ffb7a5af6e0f17dp@chr2:133426030..133426041, -
3.49e-79FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_898e54d71de34a62efa5874a314d6d35p23@TTC39A
3.49e-79FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_898e54d71de34a62efa5874a314d6d35p23@TTC39A
2.03e-66FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_04b53897b3b89373d41bbe96e5afeb8ep@chr2:133426106..133426117, -
2.03e-66FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_04b53897b3b89373d41bbe96e5afeb8ep@chr2:133426106..133426117, -
1.46e-50FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_e06e2c48482c2f61efcb174bf1d03026p8@PAX2
1.46e-50FFCP PHASE1:Hg19::chr10:134535354..134535366,-#_e06e2c48482c2f61efcb174bf1d03026p@chr10:134535354..134535366, -
1.46e-50FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_e06e2c48482c2f61efcb174bf1d03026p8@PAX2
1.46e-50FFCP PHASE2:Hg19::chr10:134535354..134535366,-#_e06e2c48482c2f61efcb174bf1d03026p@chr10:134535354..134535366, -
3.11e-50FFCP PHASE1:Hg19::chr17:17480803..17480814,-#_a80a5fc4240490533fca6fca4ea8f213p19@PEMT
3.11e-50FFCP PHASE2:Hg19::chr17:17480803..17480814,-#_a80a5fc4240490533fca6fca4ea8f213p19@PEMT
4.52e-50FFCP PHASE2:Hg19::chr9:81641483..81641491,-#_5ddf0b374814c8b270ce773c7a9cb19fp@chr9:81641483..81641491, -
4.52e-50FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_5ddf0b374814c8b270ce773c7a9cb19fp10@PAX2
4.52e-50FFCP PHASE1:Hg19::chr9:81641483..81641491,-#_5ddf0b374814c8b270ce773c7a9cb19fp@chr9:81641483..81641491, -
4.52e-50FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_5ddf0b374814c8b270ce773c7a9cb19fp10@PAX2
8.98e-41FFCP PHASE1:Hg19::chr17:171082..171101,+#_dc5a03cd9fe2cda2b0e93c7112fe02c1p@chr17:171082..171101, +
8.98e-41FFCP PHASE2:Hg19::chr17:171082..171101,+#_dc5a03cd9fe2cda2b0e93c7112fe02c1p@chr17:171082..171101, +
1.1e-40FFCP PHASE1:Hg19::chr3:172384246..172384250,+#_990c45ab46b4cd629c1abcd2af0031e9p@chr3:172384246..172384250, +
1.1e-40FFCP PHASE2:Hg19::chr3:172384246..172384250,+#_990c45ab46b4cd629c1abcd2af0031e9p@chr3:172384246..172384250, +
1.64e-40FFCP PHASE1:Hg19::chr1:45087902..45087912,+#_d0aa02ecd58d9ace2e77cd04451a07c6p@chr1:45087902..45087912, +
1.64e-40FFCP PHASE2:Hg19::chr1:45087902..45087912,+#_d0aa02ecd58d9ace2e77cd04451a07c6p@chr1:45087902..45087912, +
3.68e-40FFCP PHASE2:Hg19::chr10:102505552..102505563,+#_70ddf9b7ee0e0ff58a5ebbbdde75db36p5@PAX2
3.68e-40FFCP PHASE1:Hg19::chr10:102505552..102505563,+#_70ddf9b7ee0e0ff58a5ebbbdde75db36p5@PAX2
8.2e-37FFCP PHASE1:Hg19::chr10:102505312..102505320,+#_7b68829a114ed45ef1ba83829367240bp6@PAX2
8.2e-37FFCP PHASE2:Hg19::chr10:102505312..102505320,+#_7b68829a114ed45ef1ba83829367240bp6@PAX2
9.84e-37FFCP PHASE1:Hg19::chr9:126131131..126131159,+#_daada4563769eaf18c1a9f2513604eddp3@CRB2
9.84e-37FFCP PHASE2:Hg19::chr9:126131131..126131159,+#_daada4563769eaf18c1a9f2513604eddp3@CRB2
6.0e-34FFCP PHASE1:Hg19::chr2:113984760..113984792,+#_cebdc7cebc7c4f790384c40ab9ee6020p@chr2:113984760..113984792, +
6.0e-34FFCP PHASE2:Hg19::chr2:113984760..113984792,+#_cebdc7cebc7c4f790384c40ab9ee6020p@chr2:113984760..113984792, +
7.05e-34FFCP PHASE1:Hg19::chr11:555661..555679,+#_ac1721b2460b4f47484dec13f1815e73p@chr11:555661..555679, +
7.05e-34FFCP PHASE1:Hg19::chr1:858638..858648,+#_ac1721b2460b4f47484dec13f1815e73p@chr1:858638..858648, +
7.05e-34FFCP PHASE1:Hg19::chr7:27164585..27164612,-#_ac1721b2460b4f47484dec13f1815e73p@chr7:27164585..27164612, -
7.05e-34FFCP PHASE2:Hg19::chr11:555661..555679,+#_ac1721b2460b4f47484dec13f1815e73p@chr11:555661..555679, +
7.05e-34FFCP PHASE2:Hg19::chr1:858638..858648,+#_ac1721b2460b4f47484dec13f1815e73p@chr1:858638..858648, +
7.05e-34FFCP PHASE2:Hg19::chr7:27164585..27164612,-#_ac1721b2460b4f47484dec13f1815e73p@chr7:27164585..27164612, -
8.39e-34FFCP PHASE2:Hg19::chr10:73848549..73848564,-#_a5469bb9e79062f3881c8b01c8b1bb29p13@SPOCK2
8.39e-34FFCP PHASE1:Hg19::chr10:73848549..73848564,-#_a5469bb9e79062f3881c8b01c8b1bb29p13@SPOCK2
1.17e-33FFCP PHASE2:Hg19::chr11:118477144..118477156,+#_7d21267c65b5ed88051174cd0c44ff48p25@PHLDB1
1.17e-33FFCP PHASE1:Hg19::chr11:118477144..118477156,+#_7d21267c65b5ed88051174cd0c44ff48p25@PHLDB1
3.35e-32FFCP PHASE2:Hg19::chr2:693362..693373,+#_ce9279fab62a7050ab8154175c7b4d5cp@chr2:693362..693373, +
3.35e-32FFCP PHASE1:Hg19::chr2:693362..693373,+#_ce9279fab62a7050ab8154175c7b4d5cp@chr2:693362..693373, +
2.54e-31FFCP PHASE1:Hg19::chrX:106146562..106146577,-#_0c7e10f8304da141ee77ecd95ae960fdp1@RIPPLY1
2.54e-31FFCP PHASE2:Hg19::chrX:106146562..106146577,-#_0c7e10f8304da141ee77ecd95ae960fdp1@RIPPLY1
8.05e-30FFCP PHASE2:Hg19::chr17:171147..171161,+#_5bf0d384b5efca0e7f0188d2233caaa4p@chr17:171147..171161, +
8.05e-30FFCP PHASE1:Hg19::chr17:171147..171161,+#_5bf0d384b5efca0e7f0188d2233caaa4p@chr17:171147..171161, +
2.96e-29FFCP PHASE2:Hg19::chr2:165477405..165477418,-#_c2c0ddc6230b7ca48f9632c63004e88ep@chr2:165477405..165477418, -
2.96e-29FFCP PHASE1:Hg19::chr2:165477405..165477418,-#_c2c0ddc6230b7ca48f9632c63004e88ep@chr2:165477405..165477418, -
4.55e-29FFCP PHASE1:Hg19::chr1:874109..874143,+#_2c658deef369616933e83cc3b89f5af7p@chr1:874109..874143, +
4.55e-29FFCP PHASE2:Hg19::chr1:874109..874143,+#_2c658deef369616933e83cc3b89f5af7p@chr1:874109..874143, +
1.43e-28FFCP PHASE1:Hg19::chr2:113999199..113999214,+#_0d88a34f97c049d95aaff54c6efdd4c7p@chr2:113999199..113999214, +
1.43e-28FFCP PHASE2:Hg19::chr2:113999199..113999214,+#_0d88a34f97c049d95aaff54c6efdd4c7p@chr2:113999199..113999214, +
1.83e-27FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_3ac59417519fc6b7e6200ae4d809537dp@chr16:86604624..86604648, +
1.83e-27FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_3ac59417519fc6b7e6200ae4d809537dp7@LRRN4
1.83e-27FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_3ac59417519fc6b7e6200ae4d809537dp7@LRRN4
1.83e-27FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_3ac59417519fc6b7e6200ae4d809537dp@chr16:86604624..86604648, +
2.74e-27FFCP PHASE1:Hg19::chr19:56091499..56091517,-#_9b77851050df126db8cdfd7a88bf5d98p@chr19:56091499..56091517, -
2.74e-27FFCP PHASE2:Hg19::chr19:56091499..56091517,-#_9b77851050df126db8cdfd7a88bf5d98p@chr19:56091499..56091517, -
2.78e-26FFCP PHASE1:Hg19::chr9:112260040..112260045,+#_c78773fa539165ad610da15d4a159f1bp@chr9:112260040..112260045, +
2.78e-26FFCP PHASE2:Hg19::chr9:112260040..112260045,+#_c78773fa539165ad610da15d4a159f1bp@chr9:112260040..112260045, +
4.63e-26FFCP PHASE1:Hg19::chr22:30645170..30645182,-#_34e44e22230663b49a272939ad44ac46p@chr22:30645170..30645182, -
4.63e-26FFCP PHASE2:Hg19::chr22:30645170..30645182,-#_34e44e22230663b49a272939ad44ac46p@chr22:30645170..30645182, -
7.14e-26FFCP PHASE1:Hg19::chr8:22419319..22419327,+#_578534c8ab58fb761ad45f6fd99626bep@chr8:22419319..22419327, +
7.14e-26FFCP PHASE2:Hg19::chr8:22419319..22419327,+#_578534c8ab58fb761ad45f6fd99626bep@chr8:22419319..22419327, +
9.18e-26FFCP PHASE2:Hg19::chr10:102505946..102505949,+#_7285b0489a4172dffab5818c38046889p14@PAX2
9.18e-26FFCP PHASE1:Hg19::chr6:31833005..31833017,-#_7285b0489a4172dffab5818c38046889p@chr6:31833005..31833017, -
9.18e-26FFCP PHASE2:Hg19::chr11:32457397..32457404,-#_7285b0489a4172dffab5818c38046889p15@WT1
9.18e-26FFCP PHASE2:Hg19::chr17:15555143..15555150,-#_7285b0489a4172dffab5818c38046889p12@TRIM16
9.18e-26FFCP PHASE1:Hg19::chr8:28196820..28196830,+#_7285b0489a4172dffab5818c38046889p@chr8:28196820..28196830, +
9.18e-26FFCP PHASE1:Hg19::chr2:176973165..176973169,-#_7285b0489a4172dffab5818c38046889p@chr2:176973165..176973169, -
9.18e-26FFCP PHASE1:Hg19::chr10:102505946..102505949,+#_7285b0489a4172dffab5818c38046889p14@PAX2
9.18e-26FFCP PHASE1:Hg19::chr20:6031540..6031548,-#_7285b0489a4172dffab5818c38046889p@chr20:6031540..6031548, -
9.18e-26FFCP PHASE1:Hg19::chr11:32457397..32457404,-#_7285b0489a4172dffab5818c38046889p15@WT1
9.18e-26FFCP PHASE2:Hg19::chr6:31833005..31833017,-#_7285b0489a4172dffab5818c38046889p@chr6:31833005..31833017, -
9.18e-26FFCP PHASE1:Hg19::chr17:15555143..15555150,-#_7285b0489a4172dffab5818c38046889p12@TRIM16
9.18e-26FFCP PHASE2:Hg19::chr8:28196820..28196830,+#_7285b0489a4172dffab5818c38046889p@chr8:28196820..28196830, +
9.18e-26FFCP PHASE2:Hg19::chr2:176973165..176973169,-#_7285b0489a4172dffab5818c38046889p@chr2:176973165..176973169, -
9.18e-26FFCP PHASE2:Hg19::chr20:6031540..6031548,-#_7285b0489a4172dffab5818c38046889p@chr20:6031540..6031548, -
2.37e-25FFCP PHASE2:Hg19::chr7:27160553..27160560,+#_5d084f73bba8b44a3d21bdc74da71c2bp1@ENST00000523364, p1@uc010kux.1
2.37e-25FFCP PHASE1:Hg19::chr7:27160553..27160560,+#_5d084f73bba8b44a3d21bdc74da71c2bp1@ENST00000523364, p1@uc010kux.1
4.38e-25FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_f855739564415040d0063e1d4a6cfb5ep16@HOXA10
4.38e-25FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_f855739564415040d0063e1d4a6cfb5ep16@HOXA10
4.43e-25FFCP PHASE1:Hg19::chr1:149908263..149908281,-#_8cb47a67aec129311f9ea4409af4f9cdp6@MTMR11
4.43e-25FFCP PHASE2:Hg19::chr1:149908263..149908281,-#_8cb47a67aec129311f9ea4409af4f9cdp6@MTMR11
7.09e-25FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_731051feef0b9bb641aa336ebd5967f9p4@PAX2
7.09e-25FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_731051feef0b9bb641aa336ebd5967f9p4@PAX2
3.76e-24FFCP PHASE2:Hg19::chr1:46797583..46797614,-#_e705e90b028fa73354a3e05262e46278p@chr1:46797583..46797614, -
3.76e-24FFCP PHASE1:Hg19::chr1:46797583..46797614,-#_e705e90b028fa73354a3e05262e46278p@chr1:46797583..46797614, -
7.62e-24FFCP PHASE2:Hg19::chr6:94129519..94129544,+#_ffdd1a8e9e75ff9e1e82ec3a62a32189p@chr6:94129519..94129544, +
7.62e-24FFCP PHASE1:Hg19::chr6:94129519..94129544,+#_ffdd1a8e9e75ff9e1e82ec3a62a32189p@chr6:94129519..94129544, +
8.02e-24FFCP PHASE2:Hg19::chr2:693380..693398,+#_630723f07e4da26561169122ad426eeep@chr2:693380..693398, +
8.02e-24FFCP PHASE1:Hg19::chr2:693380..693398,+#_630723f07e4da26561169122ad426eeep@chr2:693380..693398, +
8.98e-24FFCP PHASE1:Hg19::chr2:133426077..133426103,-#_bc75b3386c1a89e475f9f476d2c25cb9p@chr2:133426077..133426103, -
8.98e-24FFCP PHASE2:Hg19::chr2:133426077..133426103,-#_bc75b3386c1a89e475f9f476d2c25cb9p@chr2:133426077..133426103, -
1.99e-23FFCP PHASE1:Hg19::chr11:32457350..32457361,+#_88e703a7944da158498f815eb5de10e2p5@WT1-AS
1.99e-23FFCP PHASE2:Hg19::chr11:32457350..32457361,+#_88e703a7944da158498f815eb5de10e2p5@WT1-AS
4.37e-23FFCP PHASE1:Hg19::chr2:176968471..176968476,-#_8a7c5c5c2d9a48184fa1a18c1c124a81p@chr2:176968471..176968476, -
4.37e-23FFCP PHASE2:Hg19::chr2:176968471..176968476,-#_8a7c5c5c2d9a48184fa1a18c1c124a81p@chr2:176968471..176968476, -
4.89e-23FFCP PHASE1:Hg19::chr12:15592437..15592438,+#_9869a361bf661ae2556160b4cf52e7aap1@ENST00000469884
4.89e-23FFCP PHASE2:Hg19::chr12:15592437..15592438,+#_9869a361bf661ae2556160b4cf52e7aap1@ENST00000469884

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