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{{CL
{{CL
|id=CL:0002591
|alt_id=
|name=smooth muscle cell of the pulmonary artery
|namespace=cell
|def="A smooth muscle of the pulmonary artery." [GOC:tfm]
|xref=BTO:0003336
|is_a=CL:0000359
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T05:01:28Z
|def="A smooth muscle of the pulmonary artery." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002591
|is_a=CL:0000359
|is_obsolete=
|located_in=
|located_in=
|name=smooth muscle cell of the pulmonary artery
|namespace=FANTOM
|obo_creation_date=2011-03-06T05:01:28Z
|part_of=UBERON:0002012
|part_of=UBERON:0002012
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=BTO:0003336
}}
}}

Latest revision as of 16:45, 12 September 2014

Name:smooth muscle cell of the pulmonary artery
Namespace:FANTOM
Definition:"A smooth muscle of the pulmonary artery." [GOC:tfm]
Xrefs:
links:
BTO:0003336
Created by:tmeehan
Creation date:2011-03-06T05:01:28Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000359(vascular associated smooth muscle cell)
part_of:UBERON:0002012(pulmonary artery)



Children


derives from:FF:0000174 (human smooth muscle cell of pulmonary artery sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)
  • 11365-117I6 (Smooth Muscle Cells - Pulmonary Artery, donor2)
  • 11437-118H6 (Smooth Muscle Cells - Pulmonary Artery, donor3)

Mouse (Mus musculus)

  • 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)
  • 11365-117I6 (Smooth Muscle Cells - Pulmonary Artery, donor2)
  • 11437-118H6 (Smooth Muscle Cells - Pulmonary Artery, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002591 (smooth muscle cell of the pulmonary artery), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr6:21648948..21648949,+#_4add52912e2339b917dc043205ec384fp@chr6:21648948..21648949, +
5.42e-195FFCP PHASE1:Hg19::chr8:90366581..90366594,-#_4add52912e2339b917dc043205ec384fp@chr8:90366581..90366594, -
5.42e-195FFCP PHASE1:Hg19::chr6:21648948..21648949,+#_4add52912e2339b917dc043205ec384fp@chr6:21648948..21648949, +
5.42e-195FFCP PHASE2:Hg19::chr8:90366581..90366594,-#_4add52912e2339b917dc043205ec384fp@chr8:90366581..90366594, -
2.55e-98FFCP PHASE1:Hg19::chr3:158928407..158928414,+#_aa00c433d07c79bab149dc79088a2a5ep@chr3:158928407..158928414, +
2.55e-98FFCP PHASE2:Hg19::chr8:120651826..120651840,-#_aa00c433d07c79bab149dc79088a2a5ep@chr8:120651826..120651840, -
2.55e-98FFCP PHASE2:Hg19::chr6:21666284..21666297,+#_aa00c433d07c79bab149dc79088a2a5ep26@LINC00340
2.55e-98FFCP PHASE1:Hg19::chrX:23072856..23072859,-#_aa00c433d07c79bab149dc79088a2a5ep@chrX:23072856..23072859, -
2.55e-98FFCP PHASE2:Hg19::chr3:158928407..158928414,+#_aa00c433d07c79bab149dc79088a2a5ep@chr3:158928407..158928414, +
2.55e-98FFCP PHASE1:Hg19::chr6:21666284..21666297,+#_aa00c433d07c79bab149dc79088a2a5ep26@LINC00340
2.55e-98FFCP PHASE1:Hg19::chr10:90749902..90749913,+#_aa00c433d07c79bab149dc79088a2a5ep14@FAS
2.55e-98FFCP PHASE2:Hg19::chr10:90749902..90749913,+#_aa00c433d07c79bab149dc79088a2a5ep14@FAS
2.55e-98FFCP PHASE1:Hg19::chr8:120651826..120651840,-#_aa00c433d07c79bab149dc79088a2a5ep@chr8:120651826..120651840, -
2.55e-98FFCP PHASE2:Hg19::chrX:23072856..23072859,-#_aa00c433d07c79bab149dc79088a2a5ep@chrX:23072856..23072859, -
2.39e-66FFCP PHASE2:Hg19::chr17:76824975..76824978,-#_b12c7355c0833800822bb79a78be0bd5p@chr17:76824975..76824978, -
2.39e-66FFCP PHASE1:Hg19::chr17:76824975..76824978,-#_b12c7355c0833800822bb79a78be0bd5p@chr17:76824975..76824978, -
2.39e-66FFCP PHASE1:Hg19::chr11:131614903..131614910,-#_b12c7355c0833800822bb79a78be0bd5p@chr11:131614903..131614910, -
2.39e-66FFCP PHASE2:Hg19::chr11:131614903..131614910,-#_b12c7355c0833800822bb79a78be0bd5p@chr11:131614903..131614910, -
4.66e-66FFCP PHASE1:Hg19::chr20:48184812..48184818,-#_d03a3a9c2a0aaa1b5d0042777039a032p13@PTGIS
4.66e-66FFCP PHASE1:Hg19::chr7:18834859..18834879,-#_d03a3a9c2a0aaa1b5d0042777039a032p@chr7:18834859..18834879, -
4.66e-66FFCP PHASE1:Hg19::chr4:38147484..38147500,-#_d03a3a9c2a0aaa1b5d0042777039a032p@chr4:38147484..38147500, -
4.66e-66FFCP PHASE1:Hg19::chr11:94587086..94587097,+#_d03a3a9c2a0aaa1b5d0042777039a032p19@AMOTL1
4.66e-66FFCP PHASE2:Hg19::chr19:54466179..54466202,+#_d03a3a9c2a0aaa1b5d0042777039a032p1@CACNG8
4.66e-66FFCP PHASE1:Hg19::chr1:176668544..176668553,+#_d03a3a9c2a0aaa1b5d0042777039a032p@chr1:176668544..176668553, +
4.66e-66FFCP PHASE2:Hg19::chr20:48184812..48184818,-#_d03a3a9c2a0aaa1b5d0042777039a032p13@PTGIS
4.66e-66FFCP PHASE1:Hg19::chr8:134047162..134047169,+#_d03a3a9c2a0aaa1b5d0042777039a032p@chr8:134047162..134047169, +
4.66e-66FFCP PHASE2:Hg19::chr11:94587086..94587097,+#_d03a3a9c2a0aaa1b5d0042777039a032p19@AMOTL1
4.66e-66FFCP PHASE2:Hg19::chr4:38147484..38147500,-#_d03a3a9c2a0aaa1b5d0042777039a032p@chr4:38147484..38147500, -
4.66e-66FFCP PHASE2:Hg19::chr7:18834859..18834879,-#_d03a3a9c2a0aaa1b5d0042777039a032p@chr7:18834859..18834879, -
4.66e-66FFCP PHASE1:Hg19::chr7:22687639..22687644,+#_d03a3a9c2a0aaa1b5d0042777039a032p@chr7:22687639..22687644, +
4.66e-66FFCP PHASE1:Hg19::chr9:16059821..16059828,+#_d03a3a9c2a0aaa1b5d0042777039a032p@chr9:16059821..16059828, +
4.66e-66FFCP PHASE2:Hg19::chr6:119590894..119590904,-#_d03a3a9c2a0aaa1b5d0042777039a032p1@ENST00000406333
4.66e-66FFCP PHASE1:Hg19::chr4:24645959..24645967,+#_d03a3a9c2a0aaa1b5d0042777039a032p@chr4:24645959..24645967, +
4.66e-66FFCP PHASE1:Hg19::chrX:140904171..140904173,+#_d03a3a9c2a0aaa1b5d0042777039a032p@chrX:140904171..140904173, +
4.66e-66FFCP PHASE1:Hg19::chr1:93043102..93043113,-#_d03a3a9c2a0aaa1b5d0042777039a032p@chr1:93043102..93043113, -
4.66e-66FFCP PHASE2:Hg19::chr9:16059821..16059828,+#_d03a3a9c2a0aaa1b5d0042777039a032p@chr9:16059821..16059828, +
4.66e-66FFCP PHASE2:Hg19::chr7:22687639..22687644,+#_d03a3a9c2a0aaa1b5d0042777039a032p@chr7:22687639..22687644, +
4.66e-66FFCP PHASE2:Hg19::chr1:176668544..176668553,+#_d03a3a9c2a0aaa1b5d0042777039a032p@chr1:176668544..176668553, +
4.66e-66FFCP PHASE2:Hg19::chr4:24645959..24645967,+#_d03a3a9c2a0aaa1b5d0042777039a032p@chr4:24645959..24645967, +
4.66e-66FFCP PHASE2:Hg19::chr8:134047162..134047169,+#_d03a3a9c2a0aaa1b5d0042777039a032p@chr8:134047162..134047169, +
4.66e-66FFCP PHASE1:Hg19::chr19:54466179..54466202,+#_d03a3a9c2a0aaa1b5d0042777039a032p1@CACNG8
4.66e-66FFCP PHASE2:Hg19::chr1:93043102..93043113,-#_d03a3a9c2a0aaa1b5d0042777039a032p@chr1:93043102..93043113, -
4.66e-66FFCP PHASE2:Hg19::chrX:140904171..140904173,+#_d03a3a9c2a0aaa1b5d0042777039a032p@chrX:140904171..140904173, +
4.66e-66FFCP PHASE1:Hg19::chr6:119590894..119590904,-#_d03a3a9c2a0aaa1b5d0042777039a032p1@ENST00000406333
2.42e-50FFCP PHASE1:Hg19::chr9:33797893..33797903,+#_f512830b6586da88e846e1f5e2002a07p@chr9:33797893..33797903, +
2.42e-50FFCP PHASE2:Hg19::chr9:33797893..33797903,+#_f512830b6586da88e846e1f5e2002a07p@chr9:33797893..33797903, +
3.99e-50FFCP PHASE1:Hg19::chr2:73302288..73302299,-#_e044153cb3fca2265be14bff635e83bcp13@RAB11FIP5
3.99e-50FFCP PHASE1:Hg19::chr4:891819..891820,-#_e044153cb3fca2265be14bff635e83bcp@chr4:891819..891820, -
3.99e-50FFCP PHASE1:Hg19::chr19:10218330..10218339,+#_e044153cb3fca2265be14bff635e83bcp1@SNORD105
3.99e-50FFCP PHASE2:Hg19::chr19:15509437..15509442,-#_e044153cb3fca2265be14bff635e83bcp@chr19:15509437..15509442, -
3.99e-50FFCP PHASE2:Hg19::chr18:65175930..65175941,+#_e044153cb3fca2265be14bff635e83bcp@chr18:65175930..65175941, +
3.99e-50FFCP PHASE1:Hg19::chr8:123580995..123581003,-#_e044153cb3fca2265be14bff635e83bcp@chr8:123580995..123581003, -
3.99e-50FFCP PHASE1:Hg19::chr18:65175930..65175941,+#_e044153cb3fca2265be14bff635e83bcp@chr18:65175930..65175941, +
3.99e-50FFCP PHASE2:Hg19::chr6:34208414..34208429,+#_e044153cb3fca2265be14bff635e83bcp16@HMGA1
3.99e-50FFCP PHASE1:Hg19::chr10:103040652..103040655,+#_e044153cb3fca2265be14bff635e83bcp1@ENST00000492301
3.99e-50FFCP PHASE2:Hg19::chr10:103040652..103040655,+#_e044153cb3fca2265be14bff635e83bcp1@ENST00000492301
3.99e-50FFCP PHASE2:Hg19::chr2:73302288..73302299,-#_e044153cb3fca2265be14bff635e83bcp13@RAB11FIP5
3.99e-50FFCP PHASE2:Hg19::chr4:891819..891820,-#_e044153cb3fca2265be14bff635e83bcp@chr4:891819..891820, -
3.99e-50FFCP PHASE2:Hg19::chr17:61995172..61995199,-#_e044153cb3fca2265be14bff635e83bcp@chr17:61995172..61995199, -
3.99e-50FFCP PHASE1:Hg19::chr17:61995172..61995199,-#_e044153cb3fca2265be14bff635e83bcp@chr17:61995172..61995199, -
3.99e-50FFCP PHASE2:Hg19::chr8:123580995..123581003,-#_e044153cb3fca2265be14bff635e83bcp@chr8:123580995..123581003, -
3.99e-50FFCP PHASE2:Hg19::chr19:10218330..10218339,+#_e044153cb3fca2265be14bff635e83bcp1@SNORD105
3.99e-50FFCP PHASE1:Hg19::chr6:34208414..34208429,+#_e044153cb3fca2265be14bff635e83bcp16@HMGA1
3.99e-50FFCP PHASE1:Hg19::chr19:15509437..15509442,-#_e044153cb3fca2265be14bff635e83bcp@chr19:15509437..15509442, -
6.58e-50FFCP PHASE1:Hg19::chr4:74392579..74392583,+#_7ce2cb16c46fd71901ee0116aece1bfdp@chr4:74392579..74392583, +
6.58e-50FFCP PHASE2:Hg19::chr6:148593641..148593643,+#_7ce2cb16c46fd71901ee0116aece1bfdp@chr6:148593641..148593643, +
6.58e-50FFCP PHASE2:Hg19::chr8:37374492..37374499,-#_7ce2cb16c46fd71901ee0116aece1bfdp1@ENST00000521989
6.58e-50FFCP PHASE1:Hg19::chr15:71371688..71371691,-#_7ce2cb16c46fd71901ee0116aece1bfdp@chr15:71371688..71371691, -
6.58e-50FFCP PHASE2:Hg19::chr19:681941..681952,+#_7ce2cb16c46fd71901ee0116aece1bfdp@chr19:681941..681952, +
6.58e-50FFCP PHASE2:Hg19::chr5:146890197..146890224,-#_7ce2cb16c46fd71901ee0116aece1bfdp@chr5:146890197..146890224, -
6.58e-50FFCP PHASE1:Hg19::chr11:13484984..13484992,+#_7ce2cb16c46fd71901ee0116aece1bfdp5@BC031228
6.58e-50FFCP PHASE2:Hg19::chr3:11675748..11675759,-#_7ce2cb16c46fd71901ee0116aece1bfdp@chr3:11675748..11675759, -
6.58e-50FFCP PHASE1:Hg19::chr4:114257151..114257163,+#_7ce2cb16c46fd71901ee0116aece1bfdp28@ANK2
6.58e-50FFCP PHASE2:Hg19::chr11:13484984..13484992,+#_7ce2cb16c46fd71901ee0116aece1bfdp5@BC031228
6.58e-50FFCP PHASE2:Hg19::chr4:74392579..74392583,+#_7ce2cb16c46fd71901ee0116aece1bfdp@chr4:74392579..74392583, +
6.58e-50FFCP PHASE2:Hg19::chr8:94712896..94712909,+#_7ce2cb16c46fd71901ee0116aece1bfdp10@FAM92A1
6.58e-50FFCP PHASE2:Hg19::chr15:71371688..71371691,-#_7ce2cb16c46fd71901ee0116aece1bfdp@chr15:71371688..71371691, -
6.58e-50FFCP PHASE1:Hg19::chr9:33797981..33798005,-#_7ce2cb16c46fd71901ee0116aece1bfdp@chr9:33797981..33798005, -
6.58e-50FFCP PHASE1:Hg19::chr1:185703364..185703371,-#_7ce2cb16c46fd71901ee0116aece1bfdp@chr1:185703364..185703371, -
6.58e-50FFCP PHASE1:Hg19::chr6:148593641..148593643,+#_7ce2cb16c46fd71901ee0116aece1bfdp@chr6:148593641..148593643, +
6.58e-50FFCP PHASE1:Hg19::chr2:84316409..84316414,-#_7ce2cb16c46fd71901ee0116aece1bfdp@chr2:84316409..84316414, -
6.58e-50FFCP PHASE1:Hg19::chr2:238116338..238116342,-#_7ce2cb16c46fd71901ee0116aece1bfdp@chr2:238116338..238116342, -
6.58e-50FFCP PHASE1:Hg19::chr8:37374492..37374499,-#_7ce2cb16c46fd71901ee0116aece1bfdp1@ENST00000521989
6.58e-50FFCP PHASE1:Hg19::chr19:681941..681952,+#_7ce2cb16c46fd71901ee0116aece1bfdp@chr19:681941..681952, +
6.58e-50FFCP PHASE1:Hg19::chr5:146890197..146890224,-#_7ce2cb16c46fd71901ee0116aece1bfdp@chr5:146890197..146890224, -
6.58e-50FFCP PHASE2:Hg19::chr9:33797981..33798005,-#_7ce2cb16c46fd71901ee0116aece1bfdp@chr9:33797981..33798005, -
6.58e-50FFCP PHASE2:Hg19::chr4:114257151..114257163,+#_7ce2cb16c46fd71901ee0116aece1bfdp28@ANK2
6.58e-50FFCP PHASE2:Hg19::chr2:84316409..84316414,-#_7ce2cb16c46fd71901ee0116aece1bfdp@chr2:84316409..84316414, -
6.58e-50FFCP PHASE1:Hg19::chr3:11675748..11675759,-#_7ce2cb16c46fd71901ee0116aece1bfdp@chr3:11675748..11675759, -
6.58e-50FFCP PHASE1:Hg19::chr8:94712896..94712909,+#_7ce2cb16c46fd71901ee0116aece1bfdp10@FAM92A1
6.58e-50FFCP PHASE2:Hg19::chr2:238116338..238116342,-#_7ce2cb16c46fd71901ee0116aece1bfdp@chr2:238116338..238116342, -
6.58e-50FFCP PHASE2:Hg19::chr1:185703364..185703371,-#_7ce2cb16c46fd71901ee0116aece1bfdp@chr1:185703364..185703371, -
9.91e-41FFCP PHASE1:Hg19::chr5:76102212..76102217,-#_044d1ba4130ebf4581853178884ef43cp@chr5:76102212..76102217, -
9.91e-41FFCP PHASE2:Hg19::chr5:76102212..76102217,-#_044d1ba4130ebf4581853178884ef43cp@chr5:76102212..76102217, -
9.91e-41FFCP PHASE2:Hg19::chr10:61845000..61845015,-#_044d1ba4130ebf4581853178884ef43cp@chr10:61845000..61845015, -
9.91e-41FFCP PHASE1:Hg19::chr10:61845000..61845015,-#_044d1ba4130ebf4581853178884ef43cp@chr10:61845000..61845015, -
1.48e-40FFCP PHASE1:Hg19::chr12:58287614..58287637,-#_fcf04dbdfb6549b406b9f21f781a2a88p1@ENST00000548955
1.48e-40FFCP PHASE2:Hg19::chr12:58287614..58287637,-#_fcf04dbdfb6549b406b9f21f781a2a88p1@ENST00000548955
2.21e-40FFCP PHASE1:Hg19::chr8:25337208..25337219,+#_e76f6b57f1d03f8be8b91882f454e045p5@CDCA2
2.21e-40FFCP PHASE1:Hg19::chr10:13749771..13749780,-#_e76f6b57f1d03f8be8b91882f454e045p20@FRMD4A

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