CL:0002600: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by=tmeehan | |created_by=tmeehan | ||
| | |def="A smooth muscle cell of the trachea." [GOC:tfm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0002600 | |||
|is_a=CL:0000192 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=smooth muscle cell of trachea | |||
|namespace=FANTOM | |||
|obo_creation_date=2011-03-06T05:50:28Z | |||
|part_of=UBERON:0003126 | |part_of=UBERON:0003126 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
|subset= | |||
|synonym= | |||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 16:45, 12 September 2014
| Name: | smooth muscle cell of trachea |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A smooth muscle cell of the trachea." [GOC:tfm] |
| Created by: | tmeehan |
| Creation date: | 2011-03-06T05:50:28Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000192(smooth muscle cell) |
|---|---|
| part_of: | UBERON:0003126(trachea) |
Children
| derives from: | FF:0000184 (human smooth muscle cell of trachea sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11513-119H1 (Smooth Muscle Cells - Tracheal, donor1)
- 11593-120G9 (Smooth Muscle Cells - Tracheal, donor2)
- 11674-122G9 (Smooth Muscle Cells - Tracheal, donor3)
Mouse (Mus musculus)
- 11513-119H1 (Smooth Muscle Cells - Tracheal, donor1)
- 11593-120G9 (Smooth Muscle Cells - Tracheal, donor2)
- 11674-122G9 (Smooth Muscle Cells - Tracheal, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002600 (smooth muscle cell of trachea), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.99e-131 | FFCP PHASE1:Hg19::chr4:139481823..139481855,+#_41f366cc575253a2df47328395954efc | p5@ENST00000502915 |
| 8.99e-131 | FFCP PHASE1:Hg19::chr8:77108050..77108053,-#_41f366cc575253a2df47328395954efc | p@chr8:77108050..77108053, - |
| 8.99e-131 | FFCP PHASE2:Hg19::chr4:139481823..139481855,+#_41f366cc575253a2df47328395954efc | p5@ENST00000502915 |
| 8.99e-131 | FFCP PHASE2:Hg19::chr8:77108050..77108053,-#_41f366cc575253a2df47328395954efc | p@chr8:77108050..77108053, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr2:128224913..128224918,+#_ef0be3602612e47ef392ef4e16e1b056 | p1@ENST00000454503 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:55739493..55739502,-#_ef0be3602612e47ef392ef4e16e1b056 | p6@AB527577, p6@CU693346 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr2:128224913..128224918,+#_ef0be3602612e47ef392ef4e16e1b056 | p1@ENST00000454503 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr6:55739493..55739502,-#_ef0be3602612e47ef392ef4e16e1b056 | p6@AB527577, p6@CU693346 |
| 1.57e-37 | FFCP PHASE1:Hg19::chr19:34787674..34787690,-#_847a02b0cd48de095a958317098e483f | p1@ENST00000431093 |
| 1.57e-37 | FFCP PHASE2:Hg19::chr19:34787674..34787690,-#_847a02b0cd48de095a958317098e483f | p1@ENST00000431093 |
| 4.29e-34 | FFCP PHASE1:Hg19::chr17:59479934..59479943,+#_43f1b715caa9a4a21cb8b9b56a68284f | p@chr17:59479934..59479943, + |
| 4.29e-34 | FFCP PHASE2:Hg19::chr17:59479934..59479943,+#_43f1b715caa9a4a21cb8b9b56a68284f | p@chr17:59479934..59479943, + |
| 5.04e-34 | FFCP PHASE1:Hg19::chr6:134070066..134070077,+#_760e93aaabf85551c7baac4311ed9a89 | p@chr6:134070066..134070077, + |
| 5.04e-34 | FFCP PHASE2:Hg19::chr6:134070066..134070077,+#_760e93aaabf85551c7baac4311ed9a89 | p@chr6:134070066..134070077, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr8:43046621..43046633,+#_afd8f00d6e5c886fd2da7c60b799d606 | p@chr8:43046621..43046633, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr21:46790685..46790698,+#_afd8f00d6e5c886fd2da7c60b799d606 | p@chr21:46790685..46790698, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr21:46790685..46790698,+#_afd8f00d6e5c886fd2da7c60b799d606 | p@chr21:46790685..46790698, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr17:15686350..15686359,+#_afd8f00d6e5c886fd2da7c60b799d606 | p4@IL6STP1 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr8:43046621..43046633,+#_afd8f00d6e5c886fd2da7c60b799d606 | p@chr8:43046621..43046633, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr16:86612092..86612099,+#_afd8f00d6e5c886fd2da7c60b799d606 | p6@FOXL1 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr17:15686350..15686359,+#_afd8f00d6e5c886fd2da7c60b799d606 | p4@IL6STP1 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr17:79966642..79966666,+#_afd8f00d6e5c886fd2da7c60b799d606 | p@chr17:79966642..79966666, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr16:86612092..86612099,+#_afd8f00d6e5c886fd2da7c60b799d606 | p6@FOXL1 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr17:79966642..79966666,+#_afd8f00d6e5c886fd2da7c60b799d606 | p@chr17:79966642..79966666, + |
| 1.6e-27 | FFCP PHASE1:Hg19::chr17:74533899..74533909,+#_2839ec616b301dc4bb56e9d08c84565e | p5@PRCD |
| 1.6e-27 | FFCP PHASE2:Hg19::chr17:74533899..74533909,+#_2839ec616b301dc4bb56e9d08c84565e | p5@PRCD |
| 7.14e-26 | FFCP PHASE2:Hg19::chr6:55739305..55739315,-#_8edd30b81c309bad51b27d762c0435f3 | p4@AB527577, p4@CU693346 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr2:187615989..187616000,+#_8edd30b81c309bad51b27d762c0435f3 | p@chr2:187615989..187616000, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr18:47087390..47087399,+#_8edd30b81c309bad51b27d762c0435f3 | p7@LIPG |
| 7.14e-26 | FFCP PHASE2:Hg19::chr18:47087390..47087399,+#_8edd30b81c309bad51b27d762c0435f3 | p7@LIPG |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:187615989..187616000,+#_8edd30b81c309bad51b27d762c0435f3 | p@chr2:187615989..187616000, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr6:55739305..55739315,-#_8edd30b81c309bad51b27d762c0435f3 | p4@AB527577, p4@CU693346 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr18:12977031..12977043,+#_8edd30b81c309bad51b27d762c0435f3 | p@chr18:12977031..12977043, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr18:12977031..12977043,+#_8edd30b81c309bad51b27d762c0435f3 | p@chr18:12977031..12977043, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr8:20125747..20125758,-#_3d9199359728aa7459aea32394c9551f | p@chr8:20125747..20125758, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr8:20125747..20125758,-#_3d9199359728aa7459aea32394c9551f | p@chr8:20125747..20125758, - |
| 1.85e-25 | FFCP PHASE2:Hg19::chr8:128387795..128387801,+#_ff77ad39159ad96b6ec6ca4c5d6c17e8 | p@chr8:128387795..128387801, + |
| 1.85e-25 | FFCP PHASE1:Hg19::chr8:128387795..128387801,+#_ff77ad39159ad96b6ec6ca4c5d6c17e8 | p@chr8:128387795..128387801, + |
| 1.7e-21 | FFCP PHASE1:Hg19::chr17:29335535..29335575,-#_120750d26785f00279599eff6d6d299c | p@chr17:29335535..29335575, - |
| 1.7e-21 | FFCP PHASE2:Hg19::chr17:29335535..29335575,-#_120750d26785f00279599eff6d6d299c | p@chr17:29335535..29335575, - |
| 2.31e-21 | FFCP PHASE1:Hg19::chr17:46671154..46671167,-#_e48f345788ced93b0550a269c6294cf5 | p4@HOXB5 |
| 2.31e-21 | FFCP PHASE2:Hg19::chr17:46671154..46671167,-#_e48f345788ced93b0550a269c6294cf5 | p4@HOXB5 |
| 4.66e-21 | FFCP PHASE2:Hg19::chr14:105297526..105297531,-#_c43c4ab41dbaea3a319948304f6627a7 | p1@RPS26P49 |
| 4.66e-21 | FFCP PHASE1:Hg19::chr8:16613036..16613043,-#_c43c4ab41dbaea3a319948304f6627a7 | p@chr8:16613036..16613043, - |
| 4.66e-21 | FFCP PHASE2:Hg19::chr8:16613036..16613043,-#_c43c4ab41dbaea3a319948304f6627a7 | p@chr8:16613036..16613043, - |
| 4.66e-21 | FFCP PHASE1:Hg19::chr14:105297526..105297531,-#_c43c4ab41dbaea3a319948304f6627a7 | p1@RPS26P49 |
| 6.96e-21 | FFCP PHASE1:Hg19::chr11:299519..299533,-#_5f5d923ca7425ae47224fc4737579fb1 | p1@IFITM5 |
| 6.96e-21 | FFCP PHASE2:Hg19::chr11:299519..299533,-#_5f5d923ca7425ae47224fc4737579fb1 | p1@IFITM5 |
| 1.29e-20 | FFCP PHASE2:Hg19::chr5:141703713..141703724,-#_85261c69134d4c27e5b99c490065c7a3 | p9@SPRY4 |
| 1.29e-20 | FFCP PHASE1:Hg19::chr5:141703713..141703724,-#_85261c69134d4c27e5b99c490065c7a3 | p9@SPRY4 |
| 7.2e-20 | FFCP PHASE1:Hg19::chr19:11306638..11306657,-#_499b55fb3898b5391f657fb8ade6e922 | p13@KANK2 |
| 7.2e-20 | FFCP PHASE2:Hg19::chr19:11306638..11306657,-#_499b55fb3898b5391f657fb8ade6e922 | p13@KANK2 |
| 2.17e-19 | FFCP PHASE1:Hg19::chr1:17914878..17914890,+#_a83609f84683e27eeb37c03fcbd22024 | p12@ARHGEF10L |
| 2.17e-19 | FFCP PHASE2:Hg19::chr1:17914878..17914890,+#_a83609f84683e27eeb37c03fcbd22024 | p12@ARHGEF10L |
| 7.67e-18 | FFCP PHASE2:Hg19::chr17:65440428..65440449,-#_3e4d9df63bf75f2c1f0e34c216c4bed2 | p@chr17:65440428..65440449, - |
| 7.67e-18 | FFCP PHASE1:Hg19::chr17:65440428..65440449,-#_3e4d9df63bf75f2c1f0e34c216c4bed2 | p@chr17:65440428..65440449, - |
| 9.07e-18 | FFCP PHASE1:Hg19::chr9:73028424..73028427,-#_594f1bafb998fbf4c896128931c12b02 | p18@KLF9 |
| 9.07e-18 | FFCP PHASE2:Hg19::chr9:73028424..73028427,-#_594f1bafb998fbf4c896128931c12b02 | p18@KLF9 |
| 1.07e-17 | FFCP PHASE1:Hg19::chr14:76447494..76447508,-#_2308833b97536750cd34ad085e546d55 | p16@TGFB3 |
| 1.07e-17 | FFCP PHASE2:Hg19::chr1:9302789..9302798,+#_2308833b97536750cd34ad085e546d55 | p@chr1:9302789..9302798, + |
| 1.07e-17 | FFCP PHASE2:Hg19::chr3:141105560..141105572,-#_2308833b97536750cd34ad085e546d55 | p@chr3:141105560..141105572, - |
| 1.07e-17 | FFCP PHASE2:Hg19::chr4:100304021..100304034,-#_2308833b97536750cd34ad085e546d55 | p@chr4:100304021..100304034, - |
| 1.07e-17 | FFCP PHASE2:Hg19::chr14:76447494..76447508,-#_2308833b97536750cd34ad085e546d55 | p16@TGFB3 |
| 1.07e-17 | FFCP PHASE1:Hg19::chr22:29965263..29965274,-#_2308833b97536750cd34ad085e546d55 | p@chr22:29965263..29965274, - |
| 1.07e-17 | FFCP PHASE1:Hg19::chr3:141105560..141105572,-#_2308833b97536750cd34ad085e546d55 | p@chr3:141105560..141105572, - |
| 1.07e-17 | FFCP PHASE2:Hg19::chr22:29965263..29965274,-#_2308833b97536750cd34ad085e546d55 | p@chr22:29965263..29965274, - |
| 1.07e-17 | FFCP PHASE1:Hg19::chr4:100304021..100304034,-#_2308833b97536750cd34ad085e546d55 | p@chr4:100304021..100304034, - |
| 1.07e-17 | FFCP PHASE1:Hg19::chr1:9302789..9302798,+#_2308833b97536750cd34ad085e546d55 | p@chr1:9302789..9302798, + |
| 1.27e-17 | FFCP PHASE2:Hg19::chr20:43589109..43589118,-#_eabe3cb94adef0eaafc888e96e43415c | p2@TOMM34 |
| 1.27e-17 | FFCP PHASE1:Hg19::chrY:58884631..58884640,+#_eabe3cb94adef0eaafc888e96e43415c | p@chrY:58884631..58884640, + |
| 1.27e-17 | FFCP PHASE2:Hg19::chrY:58884631..58884640,+#_eabe3cb94adef0eaafc888e96e43415c | p@chrY:58884631..58884640, + |
| 1.27e-17 | FFCP PHASE1:Hg19::chr20:43589109..43589118,-#_eabe3cb94adef0eaafc888e96e43415c | p2@TOMM34 |
| 1.37e-16 | FFCP PHASE1:Hg19::chr9:73094859..73094866,-#_09e5f5c0a154d896a23e0a6468fabf4d | p@chr9:73094859..73094866, - |
| 1.37e-16 | FFCP PHASE2:Hg19::chr9:73094859..73094866,-#_09e5f5c0a154d896a23e0a6468fabf4d | p@chr9:73094859..73094866, - |
| 2.19e-16 | FFCP PHASE1:Hg19::chr7:27183156..27183167,-#_2b612a0e8e86d6a1ed0a9799ff07faa5 | p8@HOXA5 |
| 2.19e-16 | FFCP PHASE2:Hg19::chr7:27183156..27183167,-#_2b612a0e8e86d6a1ed0a9799ff07faa5 | p8@HOXA5 |
| 2.56e-16 | FFCP PHASE1:Hg19::chr12:56389796..56389800,+#_c1a06b1d10d4ceb470cef2eac9da4407 | p@chr12:56389796..56389800, + |
| 2.56e-16 | FFCP PHASE2:Hg19::chr12:56389796..56389800,+#_c1a06b1d10d4ceb470cef2eac9da4407 | p@chr12:56389796..56389800, + |
| 4.65e-16 | FFCP PHASE2:Hg19::chr4:1161154..1161170,-#_51d35a8a349eced10f93a90dc4952554 | p@chr4:1161154..1161170, - |
| 4.65e-16 | FFCP PHASE1:Hg19::chr4:1161154..1161170,-#_51d35a8a349eced10f93a90dc4952554 | p@chr4:1161154..1161170, - |
| 5.02e-16 | FFCP PHASE1:Hg19::chr17:46670845..46670856,-#_4673425266fb45700938394efc38d847 | p8@AB464575 |
| 5.02e-16 | FFCP PHASE2:Hg19::chr17:46670845..46670856,-#_4673425266fb45700938394efc38d847 | p8@AB464575 |
| 5.41e-16 | FFCP PHASE2:Hg19::chr11:101918136..101918145,+#_71770ba81b3742b10568923ba2bf6323 | p2@C11orf70 |
| 5.41e-16 | FFCP PHASE1:Hg19::chr11:101918136..101918145,+#_71770ba81b3742b10568923ba2bf6323 | p2@C11orf70 |
| 7.88e-16 | FFCP PHASE1:Hg19::chr3:123518704..123518728,-#_3f222d24dcb4a2295b7a6c7f1c73b090 | p28@MYLK |
| 7.88e-16 | FFCP PHASE2:Hg19::chr3:123518704..123518728,-#_3f222d24dcb4a2295b7a6c7f1c73b090 | p28@MYLK |
| 2.05e-15 | FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_6c547a384531e4f380855108d1c80c7d | p@chr10:81923378..81923389, - |
| 2.05e-15 | FFCP PHASE1:Hg19::chr19:11546153..11546168,+#_6c547a384531e4f380855108d1c80c7d | p16@PRKCSH |
| 2.05e-15 | FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_6c547a384531e4f380855108d1c80c7d | p@chr10:81923378..81923389, - |
| 2.05e-15 | FFCP PHASE2:Hg19::chr19:11546153..11546168,+#_6c547a384531e4f380855108d1c80c7d | p16@PRKCSH |
| 2.37e-15 | FFCP PHASE1:Hg19::chr17:42164091..42164102,-#_034573813c4f3b8e01f7678eb761b577 | p@chr17:42164091..42164102, - |
| 2.37e-15 | FFCP PHASE2:Hg19::chr17:42164091..42164102,-#_034573813c4f3b8e01f7678eb761b577 | p@chr17:42164091..42164102, - |
| 2.37e-15 | FFCP PHASE1:Hg19::chr10:92178805..92178827,+#_034573813c4f3b8e01f7678eb761b577 | p@chr10:92178805..92178827, + |
| 2.37e-15 | FFCP PHASE2:Hg19::chr10:92178805..92178827,+#_034573813c4f3b8e01f7678eb761b577 | p@chr10:92178805..92178827, + |
| 2.74e-15 | FFCP PHASE1:Hg19::chr7:25400379..25400385,+#_0d8ec0a014e79973fd12ebd44b5ff582 | p@chr7:25400379..25400385, + |
| 2.74e-15 | FFCP PHASE2:Hg19::chr7:25400379..25400385,+#_0d8ec0a014e79973fd12ebd44b5ff582 | p@chr7:25400379..25400385, + |
| 4.8e-15 | FFCP PHASE2:Hg19::chr7:27154961..27154973,+#_484329547b6f65b5d88103316502a071 | p1@ENST00000517635 |
| 4.8e-15 | FFCP PHASE1:Hg19::chr7:27154961..27154973,+#_484329547b6f65b5d88103316502a071 | p1@ENST00000517635 |
| 4.95e-15 | FFCP PHASE1:Hg19::chr12:7260968..7260978,-#_f5578181f114d85c94f0bf7e388266c7 | p5@C1RL |
| 4.95e-15 | FFCP PHASE2:Hg19::chr12:7260968..7260978,-#_f5578181f114d85c94f0bf7e388266c7 | p5@C1RL |
