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{{DOID
{{DOID
|id=DOID:3451
|alt_id=
|name=skin carcinoma
|namespace=disease_ontology
|def="A carcinoma that is located_in tissues of the skin." [url:http\://www.cancer.gov/cancertopics/types/skin]
|xref=NCI:C4914;;UMLS_CUI:C0699893
|is_a=DOID:4159
|synonym="carcinoma OF SKIN" EXACT [MTH:683];;"carcinoma of skin" RELATED [];;"Non-melanoma skin cancer" EXACT [NCI2004_11_17:C4914]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A carcinoma that is located_in tissues of the skin." [url:http://www.cancer.gov/cancertopics/types/skin]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3451
|is_a=DOID:4159
|is_obsolete=
|located_in=
|located_in=
|name=skin carcinoma
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="carcinoma OF SKIN" EXACT [MTH:683];;"carcinoma of skin" RELATED [];;"Non-melanoma skin cancer" EXACT [NCI2004_11_17:C4914]
|union_of=
|xref=NCI:C4914;;UMLS_CUI:C0699893
}}
}}

Latest revision as of 16:50, 12 September 2014

Name:skin carcinoma
Namespace:FANTOM
Definition:"A carcinoma that is located_in tissues of the skin." [url:http://www.cancer.gov/cancertopics/types/skin]
Xrefs:
links:

NCI:C4914

UMLS_CUI:C0699893
Synonyms: "carcinoma OF SKIN" EXACT [MTH:683]
"carcinoma of skin" RELATED []
"Non-melanoma skin cancer" EXACT [NCI2004_11_17:C4914]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:4159(skin cancer)



Children


is a:DOID:2513 (basal cell carcinoma),DOID:3151 (skin squamous cell carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3451 (skin carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr10:69686723..69686726,-#_b1568f1db64e43108f2aad4c019a4f88p@chr10:69686723..69686726, -
1.55e-98FFCP PHASE1:Hg19::chr10:69686723..69686726,-#_b1568f1db64e43108f2aad4c019a4f88p@chr10:69686723..69686726, -
4.52e-50FFCP PHASE2:Hg19::chr8:123875147..123875159,+#_eca1904d5ad88c84b634895f549bc16dp26@ZHX2
4.52e-50FFCP PHASE1:Hg19::chr7:101448176..101448184,+#_eca1904d5ad88c84b634895f549bc16dp@chr7:101448176..101448184, +
4.52e-50FFCP PHASE2:Hg19::chr1:153431372..153431378,-#_eca1904d5ad88c84b634895f549bc16dp4@S100A7
4.52e-50FFCP PHASE2:Hg19::chr7:101448249..101448254,+#_eca1904d5ad88c84b634895f549bc16dp@chr7:101448249..101448254, +
4.52e-50FFCP PHASE1:Hg19::chr8:123875147..123875159,+#_eca1904d5ad88c84b634895f549bc16dp26@ZHX2
4.52e-50FFCP PHASE2:Hg19::chr7:101448277..101448287,+#_eca1904d5ad88c84b634895f549bc16dp@chr7:101448277..101448287, +
4.52e-50FFCP PHASE1:Hg19::chr7:101448249..101448254,+#_eca1904d5ad88c84b634895f549bc16dp@chr7:101448249..101448254, +
4.52e-50FFCP PHASE1:Hg19::chr1:153431372..153431378,-#_eca1904d5ad88c84b634895f549bc16dp4@S100A7
4.52e-50FFCP PHASE2:Hg19::chr7:101448101..101448113,+#_eca1904d5ad88c84b634895f549bc16dp@chr7:101448101..101448113, +
4.52e-50FFCP PHASE2:Hg19::chr18:22080172..22080183,+#_eca1904d5ad88c84b634895f549bc16dp@chr18:22080172..22080183, +
4.52e-50FFCP PHASE1:Hg19::chr7:101448277..101448287,+#_eca1904d5ad88c84b634895f549bc16dp@chr7:101448277..101448287, +
4.52e-50FFCP PHASE2:Hg19::chr7:101448176..101448184,+#_eca1904d5ad88c84b634895f549bc16dp@chr7:101448176..101448184, +
4.52e-50FFCP PHASE1:Hg19::chr18:22080172..22080183,+#_eca1904d5ad88c84b634895f549bc16dp@chr18:22080172..22080183, +
4.52e-50FFCP PHASE1:Hg19::chr7:101448101..101448113,+#_eca1904d5ad88c84b634895f549bc16dp@chr7:101448101..101448113, +
3.61e-34FFCP PHASE2:Hg19::chr9:97563078..97563086,+#_9db8e46b636973bfdb2141cb9bd49fb8p@chr9:97563078..97563086, +
3.61e-34FFCP PHASE2:Hg19::chr20:49047228..49047236,-#_9db8e46b636973bfdb2141cb9bd49fb8p@chr20:49047228..49047236, -
3.61e-34FFCP PHASE1:Hg19::chr9:97563078..97563086,+#_9db8e46b636973bfdb2141cb9bd49fb8p@chr9:97563078..97563086, +
3.61e-34FFCP PHASE1:Hg19::chr20:49047228..49047236,-#_9db8e46b636973bfdb2141cb9bd49fb8p@chr20:49047228..49047236, -
5.04e-34FFCP PHASE1:Hg19::chr18:61254400..61254410,+#_7dbd9415b12ee8dfb5f4330ccdcff8b1p8@SERPINB13
5.04e-34FFCP PHASE1:Hg19::chr3:81671636..81671662,-#_7dbd9415b12ee8dfb5f4330ccdcff8b1p@chr3:81671636..81671662, -
5.04e-34FFCP PHASE2:Hg19::chr17:19648916..19648937,-#_7dbd9415b12ee8dfb5f4330ccdcff8b1p10@ALDH3A1
5.04e-34FFCP PHASE1:Hg19::chr1:76127067..76127073,-#_7dbd9415b12ee8dfb5f4330ccdcff8b1p@chr1:76127067..76127073, -
5.04e-34FFCP PHASE1:Hg19::chr17:19648916..19648937,-#_7dbd9415b12ee8dfb5f4330ccdcff8b1p10@ALDH3A1
5.04e-34FFCP PHASE2:Hg19::chr3:81671636..81671662,-#_7dbd9415b12ee8dfb5f4330ccdcff8b1p@chr3:81671636..81671662, -
5.04e-34FFCP PHASE2:Hg19::chr21:37376927..37376938,+#_7dbd9415b12ee8dfb5f4330ccdcff8b1p@chr21:37376927..37376938, +
5.04e-34FFCP PHASE2:Hg19::chr1:76127067..76127073,-#_7dbd9415b12ee8dfb5f4330ccdcff8b1p@chr1:76127067..76127073, -
5.04e-34FFCP PHASE2:Hg19::chr18:61254400..61254410,+#_7dbd9415b12ee8dfb5f4330ccdcff8b1p8@SERPINB13
5.04e-34FFCP PHASE1:Hg19::chr21:37376927..37376938,+#_7dbd9415b12ee8dfb5f4330ccdcff8b1p@chr21:37376927..37376938, +
7.05e-34FFCP PHASE1:Hg19::chr1:18085798..18085805,+#_430597ae1d857f5c33020b19fe2d214fp@chr1:18085798..18085805, +
7.05e-34FFCP PHASE1:Hg19::chr3:177508111..177508119,-#_430597ae1d857f5c33020b19fe2d214fp@chr3:177508111..177508119, -
7.05e-34FFCP PHASE2:Hg19::chr19:51517875..51517889,-#_430597ae1d857f5c33020b19fe2d214fp3@AK026045
7.05e-34FFCP PHASE2:Hg19::chr11:101454246..101454255,-#_430597ae1d857f5c33020b19fe2d214fp11@TRPC6
7.05e-34FFCP PHASE1:Hg19::chr11:101454246..101454255,-#_430597ae1d857f5c33020b19fe2d214fp11@TRPC6
7.05e-34FFCP PHASE2:Hg19::chr2:178179611..178179619,-#_430597ae1d857f5c33020b19fe2d214fp4@ENST00000443132
7.05e-34FFCP PHASE1:Hg19::chr1:10980427..10980431,-#_430597ae1d857f5c33020b19fe2d214fp@chr1:10980427..10980431, -
7.05e-34FFCP PHASE2:Hg19::chr3:193809263..193809278,+#_430597ae1d857f5c33020b19fe2d214fp1@ENST00000457815
7.05e-34FFCP PHASE2:Hg19::chr13:28542963..28542973,-#_430597ae1d857f5c33020b19fe2d214fp1@CU677005
7.05e-34FFCP PHASE2:Hg19::chr17:48072063..48072074,-#_430597ae1d857f5c33020b19fe2d214fp5@DLX3
7.05e-34FFCP PHASE2:Hg19::chr1:18085798..18085805,+#_430597ae1d857f5c33020b19fe2d214fp@chr1:18085798..18085805, +
7.05e-34FFCP PHASE1:Hg19::chr19:51517875..51517889,-#_430597ae1d857f5c33020b19fe2d214fp3@AK026045
7.05e-34FFCP PHASE1:Hg19::chr2:178179611..178179619,-#_430597ae1d857f5c33020b19fe2d214fp4@ENST00000443132
7.05e-34FFCP PHASE1:Hg19::chr17:48072063..48072074,-#_430597ae1d857f5c33020b19fe2d214fp5@DLX3
7.05e-34FFCP PHASE2:Hg19::chr3:177508111..177508119,-#_430597ae1d857f5c33020b19fe2d214fp@chr3:177508111..177508119, -
7.05e-34FFCP PHASE1:Hg19::chr3:193809263..193809278,+#_430597ae1d857f5c33020b19fe2d214fp1@ENST00000457815
7.05e-34FFCP PHASE1:Hg19::chr13:28542963..28542973,-#_430597ae1d857f5c33020b19fe2d214fp1@CU677005
7.05e-34FFCP PHASE2:Hg19::chr1:10980427..10980431,-#_430597ae1d857f5c33020b19fe2d214fp@chr1:10980427..10980431, -
4.32e-26FFCP PHASE1:Hg19::chr4:73248974..73249005,+#_9224e541f2ab3d70ccc9e9f3fbbe9e02p@chr4:73248974..73249005, +
4.32e-26FFCP PHASE2:Hg19::chr5:1884077..1884085,+#_9224e541f2ab3d70ccc9e9f3fbbe9e02p1@ENST00000506335
4.32e-26FFCP PHASE1:Hg19::chr16:55600644..55600645,+#_9224e541f2ab3d70ccc9e9f3fbbe9e02p2@CAPNS2
4.32e-26FFCP PHASE1:Hg19::chr1:151826151..151826159,-#_9224e541f2ab3d70ccc9e9f3fbbe9e02p3@THEM5
4.32e-26FFCP PHASE2:Hg19::chr4:73248974..73249005,+#_9224e541f2ab3d70ccc9e9f3fbbe9e02p@chr4:73248974..73249005, +
4.32e-26FFCP PHASE1:Hg19::chr5:1884077..1884085,+#_9224e541f2ab3d70ccc9e9f3fbbe9e02p1@ENST00000506335
4.32e-26FFCP PHASE2:Hg19::chr16:55600644..55600645,+#_9224e541f2ab3d70ccc9e9f3fbbe9e02p2@CAPNS2
4.32e-26FFCP PHASE2:Hg19::chr1:151826151..151826159,-#_9224e541f2ab3d70ccc9e9f3fbbe9e02p3@THEM5
5.56e-26FFCP PHASE2:Hg19::chr1:86921028..86921032,+#_53d797709debc43329f99f76df9b3f98p@chr1:86921028..86921032, +
5.56e-26FFCP PHASE2:Hg19::chr7:101448204..101448229,+#_53d797709debc43329f99f76df9b3f98p@chr7:101448204..101448229, +
5.56e-26FFCP PHASE1:Hg19::chr16:66906996..66906997,-#_53d797709debc43329f99f76df9b3f98p@chr16:66906996..66906997, -
5.56e-26FFCP PHASE1:Hg19::chr6:152792772..152792787,-#_53d797709debc43329f99f76df9b3f98p@chr6:152792772..152792787, -
5.56e-26FFCP PHASE2:Hg19::chr3:50367252..50367278,-#_53d797709debc43329f99f76df9b3f98p@chr3:50367252..50367278, -
5.56e-26FFCP PHASE2:Hg19::chr8:120233966..120233975,+#_53d797709debc43329f99f76df9b3f98p@chr8:120233966..120233975, +
5.56e-26FFCP PHASE1:Hg19::chr8:123875131..123875140,+#_53d797709debc43329f99f76df9b3f98p25@ZHX2
5.56e-26FFCP PHASE1:Hg19::chr1:86921028..86921032,+#_53d797709debc43329f99f76df9b3f98p@chr1:86921028..86921032, +
5.56e-26FFCP PHASE1:Hg19::chr7:101448204..101448229,+#_53d797709debc43329f99f76df9b3f98p@chr7:101448204..101448229, +
5.56e-26FFCP PHASE2:Hg19::chr17:77774350..77774360,+#_53d797709debc43329f99f76df9b3f98p@chr17:77774350..77774360, +
5.56e-26FFCP PHASE1:Hg19::chr17:77774350..77774360,+#_53d797709debc43329f99f76df9b3f98p@chr17:77774350..77774360, +
5.56e-26FFCP PHASE1:Hg19::chr3:50367252..50367278,-#_53d797709debc43329f99f76df9b3f98p@chr3:50367252..50367278, -
5.56e-26FFCP PHASE1:Hg19::chr8:120233966..120233975,+#_53d797709debc43329f99f76df9b3f98p@chr8:120233966..120233975, +
5.56e-26FFCP PHASE2:Hg19::chr16:66906996..66906997,-#_53d797709debc43329f99f76df9b3f98p@chr16:66906996..66906997, -
5.56e-26FFCP PHASE2:Hg19::chr8:123875131..123875140,+#_53d797709debc43329f99f76df9b3f98p25@ZHX2
5.56e-26FFCP PHASE2:Hg19::chr6:152792772..152792787,-#_53d797709debc43329f99f76df9b3f98p@chr6:152792772..152792787, -
5.56e-26FFCP PHASE2:Hg19::chr12:130647145..130647153,+#_53d797709debc43329f99f76df9b3f98p3@FZD10
5.56e-26FFCP PHASE1:Hg19::chr12:130647145..130647153,+#_53d797709debc43329f99f76df9b3f98p3@FZD10
7.14e-26FFCP PHASE2:Hg19::chr2:234526341..234526346,+#_380566dac2a8cdec14a58644f5573cd7p1@UGT1A8
7.14e-26FFCP PHASE1:Hg19::chr2:234526341..234526346,+#_380566dac2a8cdec14a58644f5573cd7p1@UGT1A8
9.18e-26FFCP PHASE2:Hg19::chr1:153430422..153430443,-#_80ed41ced0479862d73a43e5872c631fp3@S100A7
9.18e-26FFCP PHASE2:Hg19::chr4:152117165..152117168,+#_80ed41ced0479862d73a43e5872c631fp@chr4:152117165..152117168, +
9.18e-26FFCP PHASE2:Hg19::chr10:54259346..54259353,+#_80ed41ced0479862d73a43e5872c631fp@chr10:54259346..54259353, +
9.18e-26FFCP PHASE2:Hg19::chr5:14437967..14437970,+#_80ed41ced0479862d73a43e5872c631fp@chr5:14437967..14437970, +
9.18e-26FFCP PHASE1:Hg19::chr10:54259346..54259353,+#_80ed41ced0479862d73a43e5872c631fp@chr10:54259346..54259353, +
9.18e-26FFCP PHASE2:Hg19::chr14:65406349..65406358,+#_80ed41ced0479862d73a43e5872c631fp@chr14:65406349..65406358, +
9.18e-26FFCP PHASE2:Hg19::chr10:127591699..127591713,-#_80ed41ced0479862d73a43e5872c631fp@chr10:127591699..127591713, -
9.18e-26FFCP PHASE1:Hg19::chr10:127591699..127591713,-#_80ed41ced0479862d73a43e5872c631fp@chr10:127591699..127591713, -
9.18e-26FFCP PHASE2:Hg19::chr10:92754303..92754313,+#_80ed41ced0479862d73a43e5872c631fp2@ENST00000412362
9.18e-26FFCP PHASE1:Hg19::chr10:92754303..92754313,+#_80ed41ced0479862d73a43e5872c631fp2@ENST00000412362
9.18e-26FFCP PHASE1:Hg19::chr3:136885144..136885147,+#_80ed41ced0479862d73a43e5872c631fp@chr3:136885144..136885147, +
9.18e-26FFCP PHASE1:Hg19::chr4:152117165..152117168,+#_80ed41ced0479862d73a43e5872c631fp@chr4:152117165..152117168, +
9.18e-26FFCP PHASE1:Hg19::chr1:153430422..153430443,-#_80ed41ced0479862d73a43e5872c631fp3@S100A7
9.18e-26FFCP PHASE2:Hg19::chr1:118570948..118570964,-#_80ed41ced0479862d73a43e5872c631fp@chr1:118570948..118570964, -
9.18e-26FFCP PHASE1:Hg19::chr5:14437967..14437970,+#_80ed41ced0479862d73a43e5872c631fp@chr5:14437967..14437970, +
9.18e-26FFCP PHASE1:Hg19::chr14:65406349..65406358,+#_80ed41ced0479862d73a43e5872c631fp@chr14:65406349..65406358, +
9.18e-26FFCP PHASE2:Hg19::chr3:136885144..136885147,+#_80ed41ced0479862d73a43e5872c631fp@chr3:136885144..136885147, +
9.18e-26FFCP PHASE1:Hg19::chr1:118570948..118570964,-#_80ed41ced0479862d73a43e5872c631fp@chr1:118570948..118570964, -
3.11e-21FFCP PHASE2:Hg19::chr10:5567644..5567657,+#_3b4ed01e40d2a28d46b0b0596acfaffcp@chr10:5567644..5567657, +
3.11e-21FFCP PHASE2:Hg19::chr17:39674844..39674854,+#_3b4ed01e40d2a28d46b0b0596acfaffcp@chr17:39674844..39674854, +
3.11e-21FFCP PHASE1:Hg19::chr10:5567644..5567657,+#_3b4ed01e40d2a28d46b0b0596acfaffcp@chr10:5567644..5567657, +
3.11e-21FFCP PHASE2:Hg19::chr6:132455433..132455444,+#_3b4ed01e40d2a28d46b0b0596acfaffcp4@ENST00000443303
3.11e-21FFCP PHASE1:Hg19::chr17:39674844..39674854,+#_3b4ed01e40d2a28d46b0b0596acfaffcp@chr17:39674844..39674854, +
3.11e-21FFCP PHASE1:Hg19::chr4:75180763..75180777,+#_3b4ed01e40d2a28d46b0b0596acfaffcp@chr4:75180763..75180777, +

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