Personal tools

DOID:5409: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{DOID
{{DOID
|id=DOID:5409
|alt_id=
|name=lung small cell carcinoma
|namespace=disease_ontology
|def=
|xref=MSH:D055752;;NCI:C4917;;OMIM:182280;;SNOMEDCT_2010_1_31:254632001;;SNOMEDCT_2010_1_31:254633006;;UMLS_CUI:C0149925
|is_a=DOID:3905
|synonym="Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254633006];;"SCLC" EXACT [CSP2005:2017-6589];;"small cell carcinoma of lung" RELATED [];;"small cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254632001];;"small cell neuroendocrine carcinoma of lung" EXACT [NCI2004_11_17:C4917]
|comment=OMIM mapping confirmed by DO. [SN].
|comment=OMIM mapping confirmed by DO. [SN].
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:5409
|is_a=DOID:3905
|is_obsolete=
|located_in=
|located_in=
|name=lung small cell carcinoma
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254633006];;"SCLC" EXACT [CSP2005:2017-6589];;"small cell carcinoma of lung" RELATED [];;"small cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254632001];;"small cell neuroendocrine carcinoma of lung" EXACT [NCI2004_11_17:C4917]
|union_of=
|xref=MSH:D055752;;NCI:C4917;;OMIM:182280;;SNOMEDCT_2010_1_31:254632001;;SNOMEDCT_2010_1_31:254633006;;UMLS_CUI:C0149925
}}
}}

Latest revision as of 16:52, 12 September 2014

Name:lung small cell carcinoma
Namespace:FANTOM
Xrefs:
links:

MSH:D055752
NCI:C4917
OMIM:182280
SNOMEDCT_2010_1_31:254632001
SNOMEDCT_2010_1_31:254633006

UMLS_CUI:C0149925
Synonyms: "Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254633006]
"SCLC" EXACT [CSP2005:2017-6589]
"small cell carcinoma of lung" RELATED []
"small cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254632001]
"small cell neuroendocrine carcinoma of lung" EXACT [NCI2004_11_17:C4917]
Comments:OMIM mapping confirmed by DO. [SN].

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:3905(lung carcinoma)



Children
NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:5409 (lung small cell carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_5a0cadd9f97072f65b901942816bde31p@chr6:125378873..125378876, +
1.55e-98FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_5a0cadd9f97072f65b901942816bde31p@chr6:125378873..125378876, +
2.4e-66FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_40c90676995a138ba0819dfe8db6fb93p@chr8:40525350..40525354, -
2.4e-66FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_40c90676995a138ba0819dfe8db6fb93p@chr8:40525350..40525354, -
3.1e-50FFCP PHASE1:Hg19::chr13:25269257..25269262,+#_5be4114e7d0131f457d60e83d77a108dp@chr13:25269257..25269262, +
3.1e-50FFCP PHASE2:Hg19::chr2:238385078..238385087,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:238385078..238385087, -
3.1e-50FFCP PHASE2:Hg19::chr12:27925654..27925663,-#_5be4114e7d0131f457d60e83d77a108dp@chr12:27925654..27925663, -
3.1e-50FFCP PHASE1:Hg19::chr8:57525544..57525580,+#_5be4114e7d0131f457d60e83d77a108dp@chr8:57525544..57525580, +
3.1e-50FFCP PHASE1:Hg19::chr6:998859..998863,-#_5be4114e7d0131f457d60e83d77a108dp@chr6:998859..998863, -
3.1e-50FFCP PHASE1:Hg19::chr3:77129779..77129782,+#_5be4114e7d0131f457d60e83d77a108dp@chr3:77129779..77129782, +
3.1e-50FFCP PHASE2:Hg19::chr8:98108427..98108430,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:98108427..98108430, -
3.1e-50FFCP PHASE1:Hg19::chr2:103235132..103235142,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:103235132..103235142, +
3.1e-50FFCP PHASE2:Hg19::chr8:39970826..39970832,+#_5be4114e7d0131f457d60e83d77a108dp@chr8:39970826..39970832, +
3.1e-50FFCP PHASE1:Hg19::chr14:59113338..59113345,+#_5be4114e7d0131f457d60e83d77a108dp@chr14:59113338..59113345, +
3.1e-50FFCP PHASE1:Hg19::chr2:68113370..68113379,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:68113370..68113379, -
3.1e-50FFCP PHASE1:Hg19::chr10:29213612..29213644,+#_5be4114e7d0131f457d60e83d77a108dp@chr10:29213612..29213644, +
3.1e-50FFCP PHASE1:Hg19::chr7:138721040..138721056,+#_5be4114e7d0131f457d60e83d77a108dp@chr7:138721040..138721056, +
3.1e-50FFCP PHASE1:Hg19::chr4:37653629..37653673,-#_5be4114e7d0131f457d60e83d77a108dp@chr4:37653629..37653673, -
3.1e-50FFCP PHASE2:Hg19::chr3:86289712..86289720,+#_5be4114e7d0131f457d60e83d77a108dp@chr3:86289712..86289720, +
3.1e-50FFCP PHASE2:Hg19::chr7:79840117..79840122,+#_5be4114e7d0131f457d60e83d77a108dp@chr7:79840117..79840122, +
3.1e-50FFCP PHASE1:Hg19::chr10:82723188..82723191,-#_5be4114e7d0131f457d60e83d77a108dp@chr10:82723188..82723191, -
3.1e-50FFCP PHASE2:Hg19::chr12:79756320..79756329,-#_5be4114e7d0131f457d60e83d77a108dp@chr12:79756320..79756329, -
3.1e-50FFCP PHASE1:Hg19::chr7:95776285..95776292,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:95776285..95776292, -
3.1e-50FFCP PHASE1:Hg19::chr5:28572013..28572023,-#_5be4114e7d0131f457d60e83d77a108dp@chr5:28572013..28572023, -
3.1e-50FFCP PHASE1:Hg19::chr2:192805413..192805418,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:192805413..192805418, +
3.1e-50FFCP PHASE2:Hg19::chr8:98051049..98051058,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:98051049..98051058, -
3.1e-50FFCP PHASE2:Hg19::chr14:36966895..36966899,-#_5be4114e7d0131f457d60e83d77a108dp@chr14:36966895..36966899, -
3.1e-50FFCP PHASE1:Hg19::chr8:116215608..116215615,+#_5be4114e7d0131f457d60e83d77a108dp@chr8:116215608..116215615, +
3.1e-50FFCP PHASE1:Hg19::chr8:82275651..82275662,+#_5be4114e7d0131f457d60e83d77a108dp@chr8:82275651..82275662, +
3.1e-50FFCP PHASE1:Hg19::chr3:95401649..95401655,-#_5be4114e7d0131f457d60e83d77a108dp3@ENST00000463799
3.1e-50FFCP PHASE2:Hg19::chr8:57525935..57525942,+#_5be4114e7d0131f457d60e83d77a108dp@chr8:57525935..57525942, +
3.1e-50FFCP PHASE2:Hg19::chr4:160189282..160189289,+#_5be4114e7d0131f457d60e83d77a108dp38@RAPGEF2
3.1e-50FFCP PHASE2:Hg19::chr2:103235211..103235247,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:103235211..103235247, +
3.1e-50FFCP PHASE2:Hg19::chr15:71685918..71685922,-#_5be4114e7d0131f457d60e83d77a108dp@chr15:71685918..71685922, -
3.1e-50FFCP PHASE1:Hg19::chr8:97961686..97961696,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:97961686..97961696, -
3.1e-50FFCP PHASE1:Hg19::chr6:125547084..125547089,+#_5be4114e7d0131f457d60e83d77a108dp@chr6:125547084..125547089, +
3.1e-50FFCP PHASE1:Hg19::chr4:107955476..107955508,-#_5be4114e7d0131f457d60e83d77a108dp@chr4:107955476..107955508, -
3.1e-50FFCP PHASE1:Hg19::chr3:194808375..194808396,+#_5be4114e7d0131f457d60e83d77a108dp@chr3:194808375..194808396, +
3.1e-50FFCP PHASE1:Hg19::chr18:10085504..10085505,+#_5be4114e7d0131f457d60e83d77a108dp@chr18:10085504..10085505, +
3.1e-50FFCP PHASE2:Hg19::chr20:54101133..54101144,+#_5be4114e7d0131f457d60e83d77a108dp@chr20:54101133..54101144, +
3.1e-50FFCP PHASE2:Hg19::chr10:129704382..129704389,+#_5be4114e7d0131f457d60e83d77a108dp@chr10:129704382..129704389, +
3.1e-50FFCP PHASE1:Hg19::chr1:168756079..168756087,+#_5be4114e7d0131f457d60e83d77a108dp3@ENST00000420691
3.1e-50FFCP PHASE2:Hg19::chr4:3838289..3838308,-#_5be4114e7d0131f457d60e83d77a108dp@chr4:3838289..3838308, -
3.1e-50FFCP PHASE2:Hg19::chr1:144618112..144618116,+#_5be4114e7d0131f457d60e83d77a108dp4@NBPF8
3.1e-50FFCP PHASE2:Hg19::chr2:97626375..97626385,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:97626375..97626385, -
3.1e-50FFCP PHASE2:Hg19::chr18:10085504..10085505,+#_5be4114e7d0131f457d60e83d77a108dp@chr18:10085504..10085505, +
3.1e-50FFCP PHASE2:Hg19::chr10:29213612..29213644,+#_5be4114e7d0131f457d60e83d77a108dp@chr10:29213612..29213644, +
3.1e-50FFCP PHASE1:Hg19::chr16:7354636..7354645,-#_5be4114e7d0131f457d60e83d77a108dp@chr16:7354636..7354645, -
3.1e-50FFCP PHASE1:Hg19::chr13:76563913..76563916,+#_5be4114e7d0131f457d60e83d77a108dp@chr13:76563913..76563916, +
3.1e-50FFCP PHASE2:Hg19::chr1:168756151..168756165,+#_5be4114e7d0131f457d60e83d77a108dp2@ENST00000420691
3.1e-50FFCP PHASE2:Hg19::chr12:46124855..46124858,+#_5be4114e7d0131f457d60e83d77a108dp@chr12:46124855..46124858, +
3.1e-50FFCP PHASE1:Hg19::chr9:17454025..17454033,+#_5be4114e7d0131f457d60e83d77a108dp@chr9:17454025..17454033, +
3.1e-50FFCP PHASE1:Hg19::chr3:86703134..86703137,-#_5be4114e7d0131f457d60e83d77a108dp@chr3:86703134..86703137, -
3.1e-50FFCP PHASE1:Hg19::chr2:220594700..220594702,+#_5be4114e7d0131f457d60e83d77a108dp6@ENST00000442416
3.1e-50FFCP PHASE2:Hg19::chr6:64762702..64762707,+#_5be4114e7d0131f457d60e83d77a108dp@chr6:64762702..64762707, +
3.1e-50FFCP PHASE2:Hg19::chr10:82723188..82723191,-#_5be4114e7d0131f457d60e83d77a108dp@chr10:82723188..82723191, -
3.1e-50FFCP PHASE1:Hg19::chr8:85893922..85893940,+#_5be4114e7d0131f457d60e83d77a108dp@chr8:85893922..85893940, +
3.1e-50FFCP PHASE1:Hg19::chr3:186548894..186548902,+#_5be4114e7d0131f457d60e83d77a108dp@chr3:186548894..186548902, +
3.1e-50FFCP PHASE1:Hg19::chr2:8803669..8803680,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:8803669..8803680, -
3.1e-50FFCP PHASE1:Hg19::chr21:26151976..26151979,+#_5be4114e7d0131f457d60e83d77a108dp@chr21:26151976..26151979, +
3.1e-50FFCP PHASE1:Hg19::chr17:79974020..79974025,+#_5be4114e7d0131f457d60e83d77a108dp@chr17:79974020..79974025, +
3.1e-50FFCP PHASE1:Hg19::chr17:39140393..39140399,-#_5be4114e7d0131f457d60e83d77a108dp3@KRT40
3.1e-50FFCP PHASE2:Hg19::chr1:219599419..219599426,-#_5be4114e7d0131f457d60e83d77a108dp@chr1:219599419..219599426, -
3.1e-50FFCP PHASE2:Hg19::chr13:76688920..76688924,+#_5be4114e7d0131f457d60e83d77a108dp@chr13:76688920..76688924, +
3.1e-50FFCP PHASE1:Hg19::chr7:84651827..84651832,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:84651827..84651832, -
3.1e-50FFCP PHASE1:Hg19::chr2:97626499..97626505,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:97626499..97626505, -
3.1e-50FFCP PHASE2:Hg19::chr7:120383546..120383560,+#_5be4114e7d0131f457d60e83d77a108dp@chr7:120383546..120383560, +
3.1e-50FFCP PHASE2:Hg19::chr3:95401928..95401936,-#_5be4114e7d0131f457d60e83d77a108dp3@ENST00000494840, p3@uc003dro.1
3.1e-50FFCP PHASE2:Hg19::chr2:135170047..135170048,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:135170047..135170048, +
3.1e-50FFCP PHASE2:Hg19::chr14:60958049..60958051,-#_5be4114e7d0131f457d60e83d77a108dp@chr14:60958049..60958051, -
3.1e-50FFCP PHASE1:Hg19::chr19:46531131..46531136,+#_5be4114e7d0131f457d60e83d77a108dp@chr19:46531131..46531136, +
3.1e-50FFCP PHASE1:Hg19::chr5:33650078..33650111,-#_5be4114e7d0131f457d60e83d77a108dp@chr5:33650078..33650111, -
3.1e-50FFCP PHASE1:Hg19::chr17:70940275..70940283,+#_5be4114e7d0131f457d60e83d77a108dp@chr17:70940275..70940283, +
3.1e-50FFCP PHASE1:Hg19::chr13:26155734..26155742,+#_5be4114e7d0131f457d60e83d77a108dp@chr13:26155734..26155742, +
3.1e-50FFCP PHASE1:Hg19::chr10:129703377..129703388,+#_5be4114e7d0131f457d60e83d77a108dp@chr10:129703377..129703388, +
3.1e-50FFCP PHASE1:Hg19::chr3:78360522..78360543,+#_5be4114e7d0131f457d60e83d77a108dp@chr3:78360522..78360543, +
3.1e-50FFCP PHASE1:Hg19::chr14:60194070..60194083,-#_5be4114e7d0131f457d60e83d77a108dp25@RTN1
3.1e-50FFCP PHASE2:Hg19::chr14:57127818..57127825,+#_5be4114e7d0131f457d60e83d77a108dp@chr14:57127818..57127825, +
3.1e-50FFCP PHASE1:Hg19::chr7:79765099..79765103,+#_5be4114e7d0131f457d60e83d77a108dp29@GNAI1
3.1e-50FFCP PHASE1:Hg19::chr13:95133382..95133389,-#_5be4114e7d0131f457d60e83d77a108dp@chr13:95133382..95133389, -
3.1e-50FFCP PHASE2:Hg19::chr16:7354636..7354645,-#_5be4114e7d0131f457d60e83d77a108dp@chr16:7354636..7354645, -
3.1e-50FFCP PHASE1:Hg19::chr2:234862436..234862439,+#_5be4114e7d0131f457d60e83d77a108dp16@TRPM8
3.1e-50FFCP PHASE2:Hg19::chr9:17454052..17454060,+#_5be4114e7d0131f457d60e83d77a108dp@chr9:17454052..17454060, +
3.1e-50FFCP PHASE2:Hg19::chr6:23637711..23637717,-#_5be4114e7d0131f457d60e83d77a108dp@chr6:23637711..23637717, -
3.1e-50FFCP PHASE1:Hg19::chr15:36739964..36739979,-#_5be4114e7d0131f457d60e83d77a108dp@chr15:36739964..36739979, -
3.1e-50FFCP PHASE2:Hg19::chr3:86703154..86703166,-#_5be4114e7d0131f457d60e83d77a108dp@chr3:86703154..86703166, -
3.1e-50FFCP PHASE2:Hg19::chr2:220594710..220594720,+#_5be4114e7d0131f457d60e83d77a108dp3@ENST00000442416
3.1e-50FFCP PHASE1:Hg19::chr12:41186960..41186982,-#_5be4114e7d0131f457d60e83d77a108dp@chr12:41186960..41186982, -
3.1e-50FFCP PHASE2:Hg19::chr1:100110807..100110818,+#_5be4114e7d0131f457d60e83d77a108dp@chr1:100110807..100110818, +
3.1e-50FFCP PHASE1:Hg19::chr11:69640133..69640140,+#_5be4114e7d0131f457d60e83d77a108dp@chr11:69640133..69640140, +
3.1e-50FFCP PHASE2:Hg19::chr14:60194267..60194275,-#_5be4114e7d0131f457d60e83d77a108dp20@RTN1
3.1e-50FFCP PHASE1:Hg19::chr8:98073725..98073731,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:98073725..98073731, -
3.1e-50FFCP PHASE1:Hg19::chr8:38441630..38441635,+#_5be4114e7d0131f457d60e83d77a108dp@chr8:38441630..38441635, +
3.1e-50FFCP PHASE1:Hg19::chr6:141715304..141715307,+#_5be4114e7d0131f457d60e83d77a108dp@chr6:141715304..141715307, +
3.1e-50FFCP PHASE1:Hg19::chr4:139019174..139019198,-#_5be4114e7d0131f457d60e83d77a108dp@chr4:139019174..139019198, -
3.1e-50FFCP PHASE2:Hg19::chr11:67402354..67402359,-#_5be4114e7d0131f457d60e83d77a108dp@chr11:67402354..67402359, -
3.1e-50FFCP PHASE2:Hg19::chr2:91776712..91776739,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:91776712..91776739, +
3.1e-50FFCP PHASE2:Hg19::chr17:79974020..79974025,+#_5be4114e7d0131f457d60e83d77a108dp@chr17:79974020..79974025, +
3.1e-50FFCP PHASE2:Hg19::chr17:39140393..39140399,-#_5be4114e7d0131f457d60e83d77a108dp3@KRT40
3.1e-50FFCP PHASE2:Hg19::chr12:84126726..84126727,-#_5be4114e7d0131f457d60e83d77a108dp@chr12:84126726..84126727, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=DOID:5409&oldid=3275719"