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{{UBERON
{{UBERON
|id=UBERON:0002050
|alt_id=UBERON:FMA_69067-XAO_0003042-ZFA_0001105
|name=embryonic structure
|namespace=
|def="Anatomical structure that is part of an embryo." [BTO:0000174, ZFIN:curator]
|xref=AAO:0000138;;AEO:0000125;;BILA:0000034;;BTO:0000174;;EFO:0000461;;FBbt:00004208;;FMA:69067;;GAID:407;;MESH:A.16;;ncithesaurus:Embryonic_Structure;;RETIRED_EHDAA2:0003169;;SCTID:667009;;TAO:0001105;;VSAO:0000178;;XAO:0003042;;ZFA:0001105
|is_a=UBERON:0000061;;UBERON:0005423
|synonym="developing embryonic structure" EXACT [FBbt:00004208];;"developing structure" RELATED [];;"embryonale Struktur" RELATED [BTO:0000174];;"embryonic anatomical structure" EXACT [RETIRED_EHDAA2:0003169]
|comment=Note in FMA embryo is_a embryonic structure
|comment=Note in FMA embryo is_a embryonic structure
|alt_id=UBERON:FMA_69067-XAO_0003042-ZFA_0001105
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Anatomical structure that is part of an embryo." [BTO:0000174, ZFIN:curator]
|subset=inconsistent_with_fma;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002050
|is_a=UBERON:0000061 ;;UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=embryonic structure
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[AAO]" xsd:string;;UBPROP:0000001 "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[TAO]" xsd:string;;UBPROP:0000001 "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[VSAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[AAO]" xsd:string;;UBPROP:0000001 "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[TAO]" xsd:string;;UBPROP:0000001 "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[VSAO]" xsd:string
|is_obsolete=
|subset=inconsistent_with_fma;;vertebrate_core
|preceded_by=
|synonym="developing embryonic structure" EXACT [FBbt:00004208];;"developing structure" RELATED [];;"embryonale Struktur" RELATED [BTO:0000174];;"embryonic anatomical structure" EXACT [RETIRED_EHDAA2:0003169]
|union_of=
|xref=AAO:0000138;;AEO:0000125;;BILA:0000034;;BTO:0000174;;EFO:0000461;;FBbt:00004208;;FMA:69067;;GAID:407;;MESH:A.16;;ncithesaurus:Embryonic_Structure;;RETIRED_EHDAA2:0003169;;SCTID:667009;;TAO:0001105;;VSAO:0000178;;XAO:0003042;;ZFA:0001105
}}
}}

Latest revision as of 17:25, 12 September 2014

Name:embryonic structure
Namespace:FANTOM
Definition:"Anatomical structure that is part of an embryo." [BTO:0000174, ZFIN:curator]
Xrefs:
links:

AAO:0000138
AEO:0000125
BILA:0000034
BTO:0000174
EFO:0000461
FBbt:00004208
FMA:69067
GAID:407
MESH:A.16
ncithesaurus:Embryonic_Structure
RETIRED_EHDAA2:0003169
SCTID:667009
TAO:0001105
VSAO:0000178
XAO:0003042

ZFA:0001105
Synonyms: "developing embryonic structure" EXACT [FBbt:00004208]
"developing structure" RELATED []
"embryonale Struktur" RELATED [BTO:0000174]
"embryonic anatomical structure" EXACT [RETIRED_EHDAA2:0003169]
Comments:Note in FMA embryo is_a embryonic structure
Alt_id: UBERON:FMA_69067-XAO_0003042-ZFA_0001105
Subset: inconsistent_with_fma
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000061(anatomical structure),UBERON:0005423(developing anatomical structure)
part_of:UBERON:0000922(embryo)



Children

is a:UBERON:0000087 (inner cell mass),UBERON:0000088 (trophoblast),UBERON:0000091 (bilaminar disc),UBERON:0000163 (embryonic cloaca),UBERON:0000358 (blastocyst),UBERON:0000930 (stomodeum),UBERON:0000931 (proctodeum),UBERON:0002061 (truncus arteriosus),UBERON:0002296 (dorsal mesentery),UBERON:0002532 (epiblast (generic)),UBERON:0002539 (pharyngeal arch),UBERON:0003285 (limb of embryo),UBERON:0003890 (Mullerian duct),UBERON:0004348 (optic eminence),UBERON:0004357 (paired limb/fin bud),UBERON:0004363 (pharyngeal arch artery),UBERON:0005291 (embryonic tissue),UBERON:0005432 (aortic sac),UBERON:0005498 (primitive heart tube),UBERON:0005602 (dorsal mesogastrium),UBERON:0005795 (embryonic uterus),UBERON:0006222 (future diencephalon),UBERON:0006232 (facio-acoustic VII-VIII preganglion complex),UBERON:0006256 (knee joint primordium),UBERON:0007026 (primitive gut),UBERON:0008814 (pharyngeal arch system),UBERON:0008816 (embryonic head),UBERON:0009117 (indifferent gonad),UBERON:0009142 (entire embryonic mesenchyme),UBERON:0009196 (indifferent external genitalia),UBERON:0010130 (autopod plate),UBERON:0010375 (pancreas dorsal primordium),UBERON:0011628 (early premaxilla),UBERON:0011997 (coelom),UBERON:0012292 (embryonic cloacal fold),UBERON:0013241 (embryonic urethral groove),UBERON:0014371 (future telencephalon)
disjoint from:UBERON:0000478 (extraembryonic structure)
part of:UBERON:0005291 (embryonic tissue)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002050 (embryonic structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.53e-31FFCP PHASE2:Hg19::chr20:23618584..23618603,-#_d858c19b45243c63c7c2091a84fd2fbfp1@CST3
4.53e-31FFCP PHASE1:Hg19::chr20:23618584..23618603,-#_d858c19b45243c63c7c2091a84fd2fbfp1@CST3
1.85e-30FFCP PHASE1:Hg19::chr13:77460532..77460548,-#_8bb6b038a6d5582678b22b237bcbca3cp1@KCTD12
1.85e-30FFCP PHASE2:Hg19::chr13:77460532..77460548,-#_8bb6b038a6d5582678b22b237bcbca3cp1@KCTD12
1.06e-29FFCP PHASE1:Hg19::chr13:45010939..45011033,-#_99c359f96069acd87d8d854aedeb6118p1@TSC22D1
1.06e-29FFCP PHASE2:Hg19::chr13:45010939..45011033,-#_99c359f96069acd87d8d854aedeb6118p1@TSC22D1
1.91e-28FFCP PHASE1:Hg19::chr2:230135937..230136016,-#_d4b4c1819be61b0d66a14e0f9a3ba041p1@PID1
1.91e-28FFCP PHASE2:Hg19::chr2:230135937..230136016,-#_d4b4c1819be61b0d66a14e0f9a3ba041p1@PID1
3.23e-27FFCP PHASE2:Hg19::chr7:111846435..111846471,-#_1a073e7d1d6d674ea81802aef162f340p1@DOCK4
3.23e-27FFCP PHASE1:Hg19::chr7:111846435..111846471,-#_1a073e7d1d6d674ea81802aef162f340p1@DOCK4
1.12e-26FFCP PHASE1:Hg19::chr11:1330834..1330875,-#_109507a1b40d25952afe5bc9aab2a702p1@TOLLIP
1.12e-26FFCP PHASE2:Hg19::chr11:1330834..1330875,-#_109507a1b40d25952afe5bc9aab2a702p1@TOLLIP
4.28e-26FFCP PHASE1:Hg19::chr13:77460594..77460613,-#_7ad817e9ae050123e39be4e5fcdd0a6ap3@KCTD12
4.28e-26FFCP PHASE2:Hg19::chr13:77460594..77460613,-#_7ad817e9ae050123e39be4e5fcdd0a6ap3@KCTD12
7.76e-25FFCP PHASE1:Hg19::chr12:112204714..112204781,+#_0bb735c5be4d68b7623773b5fd520cf2p1@ALDH2
7.76e-25FFCP PHASE2:Hg19::chr12:112204714..112204781,+#_0bb735c5be4d68b7623773b5fd520cf2p1@ALDH2
1.05e-24FFCP PHASE2:Hg19::chr4:85887789..85887862,-#_c9a5611eb61c5be0d5febe3f2759aefdp1@WDFY3
1.05e-24FFCP PHASE1:Hg19::chr4:85887789..85887862,-#_c9a5611eb61c5be0d5febe3f2759aefdp1@WDFY3
2.14e-24FFCP PHASE2:Hg19::chr8:30670289..30670354,-#_292edeba934edd2e5dce78065c2b1935p1@PPP2CB
2.14e-24FFCP PHASE1:Hg19::chr8:30670289..30670354,-#_292edeba934edd2e5dce78065c2b1935p1@PPP2CB
5.99e-24FFCP PHASE1:Hg19::chr13:77460635..77460654,-#_930f48e78896754c3fb76bb8933c0a4cp2@KCTD12
5.99e-24FFCP PHASE2:Hg19::chr13:77460635..77460654,-#_930f48e78896754c3fb76bb8933c0a4cp2@KCTD12
7.3e-24FFCP PHASE1:Hg19::chr16:4852616..4852679,-#_930a5d04ee33d5418d9376e995c0ced2p1@ROGDI
7.3e-24FFCP PHASE2:Hg19::chr16:4852616..4852679,-#_930a5d04ee33d5418d9376e995c0ced2p1@ROGDI
2.42e-23FFCP PHASE1:Hg19::chr16:2563989..2564006,+#_29f66dac6362667956c0d3c837baf3efp2@ATP6V0C
2.42e-23FFCP PHASE2:Hg19::chr16:2563989..2564006,+#_29f66dac6362667956c0d3c837baf3efp2@ATP6V0C
4.38e-23FFCP PHASE2:Hg19::chr19:40871734..40871809,+#_e3838a447824581b351e909e35c4121bp1@PLD3
4.38e-23FFCP PHASE1:Hg19::chr19:40871734..40871809,+#_e3838a447824581b351e909e35c4121bp1@PLD3
5.01e-23FFCP PHASE2:Hg19::chr4:159094160..159094185,-#_b58d5e76212f3b12a0f9d083c143b781p2@FAM198B
5.01e-23FFCP PHASE1:Hg19::chr4:159094160..159094185,-#_b58d5e76212f3b12a0f9d083c143b781p2@FAM198B
5.59e-23FFCP PHASE2:Hg19::chr1:183774240..183774270,+#_3b838a685d6e5f9c919a7110b80d0a01p1@RGL1
5.59e-23FFCP PHASE1:Hg19::chr1:183774240..183774270,+#_3b838a685d6e5f9c919a7110b80d0a01p1@RGL1
6.77e-23FFCP PHASE2:Hg19::chr20:35974484..35974529,+#_12fc5b6b59aeb272c931f4c6dd5ac0ccp2@SRC
6.77e-23FFCP PHASE1:Hg19::chr20:35974484..35974529,+#_12fc5b6b59aeb272c931f4c6dd5ac0ccp2@SRC
1.19e-22FFCP PHASE1:Hg19::chr11:65082349..65082378,+#_6364068effcd6f95e18930efdba39f89p1@CDC42EP2
1.19e-22FFCP PHASE2:Hg19::chr11:65082349..65082378,+#_6364068effcd6f95e18930efdba39f89p1@CDC42EP2
1.43e-22FFCP PHASE1:Hg19::chr19:6720653..6720670,-#_e164befb856b7417d28c15c54b4e7251p1@C3
1.43e-22FFCP PHASE2:Hg19::chr19:6720653..6720670,-#_e164befb856b7417d28c15c54b4e7251p1@C3
1.78e-22FFCP PHASE1:Hg19::chr15:90456156..90456198,-#_46a26dd9408e86a05d17aa7f1f283d19p1@C15orf38
1.78e-22FFCP PHASE2:Hg19::chr15:90456156..90456198,-#_46a26dd9408e86a05d17aa7f1f283d19p1@C15orf38
1.87e-22FFCP PHASE2:Hg19::chr4:24914581..24914691,-#_decc0f032aab9f04551be13e2249e20dp1@CCDC149
1.87e-22FFCP PHASE1:Hg19::chr4:24914581..24914691,-#_decc0f032aab9f04551be13e2249e20dp1@CCDC149
2.63e-22FFCP PHASE1:Hg19::chr18:59561635..59561651,-#_1696a099ff45195e8031870cf386dd24p@chr18:59561635..59561651, -
2.63e-22FFCP PHASE2:Hg19::chr18:59561635..59561651,-#_1696a099ff45195e8031870cf386dd24p@chr18:59561635..59561651, -
5.07e-22FFCP PHASE2:Hg19::chr19:44100155..44100211,-#_b1bcb234e86e33aaf9fa51bf3e777133p1@IRGQ
5.07e-22FFCP PHASE1:Hg19::chr19:44100155..44100211,-#_b1bcb234e86e33aaf9fa51bf3e777133p1@IRGQ
5.66e-22FFCP PHASE1:Hg19::chr17:1466030..1466129,-#_f238cf566bf4423e3b89fb1e59514b55p1@PITPNA
5.66e-22FFCP PHASE2:Hg19::chr17:1466030..1466129,-#_f238cf566bf4423e3b89fb1e59514b55p1@PITPNA
7.24e-22FFCP PHASE2:Hg19::chr7:2671611..2671658,+#_a8b4fcf1fa2522dd0c3f149470891618p2@TTYH3
7.24e-22FFCP PHASE1:Hg19::chr7:2671611..2671658,+#_a8b4fcf1fa2522dd0c3f149470891618p2@TTYH3
1.04e-21FFCP PHASE1:Hg19::chr9:14314566..14314618,-#_02f3ac34340382422b6683474f6ec06fp1@NFIB
1.04e-21FFCP PHASE2:Hg19::chr9:14314566..14314618,-#_02f3ac34340382422b6683474f6ec06fp1@NFIB
1.42e-21FFCP PHASE1:Hg19::chr18:59561658..59561685,-#_899d000dfe981a654a9499e182c109d0p@chr18:59561658..59561685, -
1.42e-21FFCP PHASE2:Hg19::chr18:59561658..59561685,-#_899d000dfe981a654a9499e182c109d0p@chr18:59561658..59561685, -
1.76e-21FFCP PHASE1:Hg19::chr17:7492684..7492778,-#_843890bc9f1db414479ab378da9d8003p2@SOX15
1.76e-21FFCP PHASE2:Hg19::chr17:7492684..7492778,-#_843890bc9f1db414479ab378da9d8003p2@SOX15
1.92e-21FFCP PHASE1:Hg19::chr2:127864839..127864888,-#_6445d435b028a21027f48199d6c680adp2@BIN1
1.92e-21FFCP PHASE2:Hg19::chr2:127864839..127864888,-#_6445d435b028a21027f48199d6c680adp2@BIN1
3.14e-21FFCP PHASE1:Hg19::chr9:14314131..14314147,-#_ee3d4b449e4108d2625de95b82b11e77p2@NFIB
3.14e-21FFCP PHASE2:Hg19::chr9:14314131..14314147,-#_ee3d4b449e4108d2625de95b82b11e77p2@NFIB
3.31e-21FFCP PHASE1:Hg19::chr1:10270620..10270637,+#_c5cccb1f84792586dc292679accf211dp1@KIF1B
3.31e-21FFCP PHASE2:Hg19::chr1:10270620..10270637,+#_c5cccb1f84792586dc292679accf211dp1@KIF1B
7.13e-21FFCP PHASE1:Hg19::chr10:30025922..30025958,-#_256456901ada28627fe5441ea50d983bp3@SVIL
7.13e-21FFCP PHASE2:Hg19::chr10:30025922..30025958,-#_256456901ada28627fe5441ea50d983bp3@SVIL
7.14e-21FFCP PHASE1:Hg19::chr17:73851380..73851427,-#_ef93584d93eb88383fd74d0673b3a4afp1@WBP2
7.14e-21FFCP PHASE2:Hg19::chr17:73851380..73851427,-#_ef93584d93eb88383fd74d0673b3a4afp1@WBP2
1.03e-20FFCP PHASE1:Hg19::chr2:127864608..127864688,-#_0b4ce5200381a358c53c99f041798d7dp1@BIN1
1.03e-20FFCP PHASE2:Hg19::chr2:127864608..127864688,-#_0b4ce5200381a358c53c99f041798d7dp1@BIN1
1.29e-20FFCP PHASE2:Hg19::chr9:34989685..34989748,+#_9d4c95b0aa8ff87d3c5a6026c714f01ap1@DNAJB5
1.29e-20FFCP PHASE1:Hg19::chr9:34989685..34989748,+#_9d4c95b0aa8ff87d3c5a6026c714f01ap1@DNAJB5
2.36e-20FFCP PHASE2:Hg19::chr22:31003154..31003188,+#_81852d5f8744dd0a7209ea10d699ad09p1@TCN2
2.36e-20FFCP PHASE1:Hg19::chr22:31003154..31003188,+#_81852d5f8744dd0a7209ea10d699ad09p1@TCN2
2.87e-20FFCP PHASE1:Hg19::chr12:110719036..110719113,+#_46cc6473c14383b161763e6385198d4dp1@ATP2A2
2.87e-20FFCP PHASE2:Hg19::chr12:110719036..110719113,+#_46cc6473c14383b161763e6385198d4dp1@ATP2A2
3.22e-20FFCP PHASE2:Hg19::chr19:14228541..14228582,-#_d17e9342afe94efa240a040358a149c9p1@PRKACA
3.22e-20FFCP PHASE1:Hg19::chr19:14228541..14228582,-#_d17e9342afe94efa240a040358a149c9p1@PRKACA
3.72e-20FFCP PHASE2:Hg19::chr10:118764649..118764683,-#_0f5396f48e60d08bd533d1ccefe351dfp2@KIAA1598
3.72e-20FFCP PHASE1:Hg19::chr10:118764649..118764683,-#_0f5396f48e60d08bd533d1ccefe351dfp2@KIAA1598
3.9e-20FFCP PHASE2:Hg19::chr1:68698197..68698214,-#_523ae4db432d985124ac7e7188ea9badp1@WLS
3.9e-20FFCP PHASE1:Hg19::chr1:68698197..68698214,-#_523ae4db432d985124ac7e7188ea9badp1@WLS
5.62e-20FFCP PHASE1:Hg19::chr16:89787269..89787359,-#_823cc04d67b1d0a774f97f54e7035d3dp1@C16orf7
5.62e-20FFCP PHASE2:Hg19::chr16:89787269..89787359,-#_823cc04d67b1d0a774f97f54e7035d3dp1@C16orf7
6.21e-20FFCP PHASE2:Hg19::chr2:153191678..153191697,+#_4012c8adeb686a84872b8b44dc2217e6p1@FMNL2
6.21e-20FFCP PHASE1:Hg19::chr2:153191678..153191697,+#_4012c8adeb686a84872b8b44dc2217e6p1@FMNL2
7.05e-20FFCP PHASE1:Hg19::chr15:64995399..64995422,-#_a0673acefa04cc54109e1a016387d187p1@OAZ2
7.05e-20FFCP PHASE2:Hg19::chr15:64995399..64995422,-#_a0673acefa04cc54109e1a016387d187p1@OAZ2
7.55e-20FFCP PHASE2:Hg19::chr10:25012800..25012822,-#_e16a7269f5ff8717f5f65cc41e4ad213p1@ARHGAP21
7.55e-20FFCP PHASE1:Hg19::chr10:25012800..25012822,-#_e16a7269f5ff8717f5f65cc41e4ad213p1@ARHGAP21
1.14e-19FFCP PHASE1:Hg19::chr6:123110389..123110441,+#_eaa8845d2d19acc4a88175de9109d64bp1@SMPDL3A
1.14e-19FFCP PHASE2:Hg19::chr6:123110389..123110441,+#_eaa8845d2d19acc4a88175de9109d64bp1@SMPDL3A
1.21e-19FFCP PHASE2:Hg19::chr20:23614485..23614564,-#_6ad72a97905ec28e8ac946c6bfcee604p@chr20:23614485..23614564, -
1.21e-19FFCP PHASE1:Hg19::chr20:23614485..23614564,-#_6ad72a97905ec28e8ac946c6bfcee604p@chr20:23614485..23614564, -
1.23e-19FFCP PHASE1:Hg19::chr4:77134999..77135036,-#_ea92c963e05ded40c88b0250c9642f41p3@SCARB2
1.23e-19FFCP PHASE2:Hg19::chr4:77134999..77135036,-#_ea92c963e05ded40c88b0250c9642f41p3@SCARB2
1.59e-19FFCP PHASE2:Hg19::chr12:52345448..52345532,+#_4292215ed2e38922cfcd1bbf5d17ae06p1@ACVR1B
1.59e-19FFCP PHASE1:Hg19::chr12:52345448..52345532,+#_4292215ed2e38922cfcd1bbf5d17ae06p1@ACVR1B
1.75e-19FFCP PHASE1:Hg19::chr16:2563941..2563983,+#_fc839cd0850ee4913f8f56ba475423f8p1@ATP6V0C
1.75e-19FFCP PHASE2:Hg19::chr16:2563941..2563983,+#_fc839cd0850ee4913f8f56ba475423f8p1@ATP6V0C
1.76e-19FFCP PHASE2:Hg19::chr8:28559004..28559039,+#_0f8f8a0edafbff7b6e1bd8bb39f67bc9p1@EXTL3
1.76e-19FFCP PHASE1:Hg19::chr8:28559004..28559039,+#_0f8f8a0edafbff7b6e1bd8bb39f67bc9p1@EXTL3










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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