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{{UBERON
{{UBERON
|id=UBERON:0003528
|alt_id=
|name=brain grey matter
|namespace=
|def="A gray matter of neuraxis that is part of a brain [Obol]." [OBOL:automatic]
|xref=MA:0000810;;ncithesaurus:Cerebral_Gray_Matter
|is_a=UBERON:0002020;;UBERON:0002616
|synonym="brain gray matter" EXACT [OBOL:automatic];;"brain gray matter of neuraxis" EXACT [OBOL:automatic];;"brain grey substance" EXACT [OBOL:automatic];;"gray matter of brain" EXACT [OBOL:automatic];;"gray matter of neuraxis of brain" EXACT [OBOL:automatic];;"grey matter of brain" EXACT [OBOL:automatic];;"grey substance of brain" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A gray matter of neuraxis that is part of a brain [Obol]." [OBOL:automatic]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003528
|is_a=UBERON:0002020
|is_obsolete=
|located_in=
|located_in=
|name=brain grey matter
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000955
|part_of=UBERON:0000955
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="brain gray matter" EXACT [OBOL:automatic];;"brain gray matter of neuraxis" EXACT [OBOL:automatic];;"brain grey substance" EXACT [OBOL:automatic];;"gray matter of brain" EXACT [OBOL:automatic];;"gray matter of neuraxis of brain" EXACT [OBOL:automatic];;"grey matter of brain" EXACT [OBOL:automatic];;"grey substance of brain" EXACT [OBOL:automatic]
|union_of=
|xref=MA:0000810;;ncithesaurus:Cerebral_Gray_Matter
}}
}}

Latest revision as of 17:40, 12 September 2014

Name:brain grey matter
Namespace:FANTOM
Definition:"A gray matter of neuraxis that is part of a brain [Obol]." [OBOL:automatic]
Xrefs:
links:

MA:0000810

ncithesaurus:Cerebral_Gray_Matter
Synonyms: "brain gray matter" EXACT [OBOL:automatic]
"brain gray matter of neuraxis" EXACT [OBOL:automatic]
"brain grey substance" EXACT [OBOL:automatic]
"gray matter of brain" EXACT [OBOL:automatic]
"gray matter of neuraxis of brain" EXACT [OBOL:automatic]
"grey matter of brain" EXACT [OBOL:automatic]
"grey substance of brain" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002020(gray matter)
part_of:UBERON:0000955(brain)



Children

is a:UBERON:0002420 (basal ganglion),UBERON:0006514 (pallidum),UBERON:0010122 (future caudate nucleus),UBERON:0011300 (gray matter of telencephalon)
part of:UBERON:0002308 (nucleus of brain)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003528 (brain grey matter), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.77e-120FFCP PHASE2:Hg19::chr11:49582389..49582417,+#_9271de7c742b723d644ab2015727346bp1@ENST00000527477, p1@ENST00000530858
2.77e-120FFCP PHASE1:Hg19::chr11:49582389..49582417,+#_9271de7c742b723d644ab2015727346bp1@ENST00000527477, p1@ENST00000530858
3.69e-119FFCP PHASE2:Hg19::chr14:24047743..24047754,-#_0ec275c9aeb300eae2199babfd3deccdp12@JPH4
3.69e-119FFCP PHASE1:Hg19::chr14:24047743..24047754,-#_0ec275c9aeb300eae2199babfd3deccdp12@JPH4
3.97e-118FFCP PHASE2:Hg19::chr12:11652664..11652681,+#_d53101bc2f8234549ccad72a715cdfd9p@chr12:11652664..11652681, +
3.97e-118FFCP PHASE1:Hg19::chr12:11652664..11652681,+#_d53101bc2f8234549ccad72a715cdfd9p@chr12:11652664..11652681, +
2.4e-117FFCP PHASE1:Hg19::chr4:6474472..6474528,-#_67ead9750b27e4759c82190a9a935ac6p6@PPP2R2C
2.4e-117FFCP PHASE2:Hg19::chr4:6474472..6474528,-#_67ead9750b27e4759c82190a9a935ac6p6@PPP2R2C
2.24e-116FFCP PHASE1:Hg19::chr2:210444748..210444770,+#_f8e5519d53876999fab56a19e55eb0c4p20@MAP2
2.24e-116FFCP PHASE2:Hg19::chr2:210444748..210444770,+#_f8e5519d53876999fab56a19e55eb0c4p20@MAP2
6.97e-116FFCP PHASE1:Hg19::chr7:150748288..150748337,+#_acd727aedf8ebf32f52788fd124577bbp1@ACCN3
6.97e-116FFCP PHASE2:Hg19::chr7:150748288..150748337,+#_acd727aedf8ebf32f52788fd124577bbp1@ACCN3
4.01e-115FFCP PHASE2:Hg19::chr19:54462732..54462743,+#_428261e42ef78e1ec8f7713fb23ebef3p@chr19:54462732..54462743, +
4.01e-115FFCP PHASE1:Hg19::chr19:54462732..54462743,+#_428261e42ef78e1ec8f7713fb23ebef3p@chr19:54462732..54462743, +
1.14e-114FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_3470971641e9b2f082694db33ce256cfp3@GRIN2B
1.14e-114FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_3470971641e9b2f082694db33ce256cfp3@GRIN2B
3.44e-114FFCP PHASE1:Hg19::chr19:55794942..55794982,+#_df0218af0efc9258b2aa534f17b4dbf9p@chr19:55794942..55794982, +
3.44e-114FFCP PHASE2:Hg19::chr19:55794942..55794982,+#_df0218af0efc9258b2aa534f17b4dbf9p@chr19:55794942..55794982, +
4.09e-114FFCP PHASE1:Hg19::chr2:115200192..115200244,+#_68ac70504cb4a7816b5d5118acf35e9dp3@DPP10
4.09e-114FFCP PHASE2:Hg19::chr2:115200192..115200244,+#_68ac70504cb4a7816b5d5118acf35e9dp3@DPP10
5.07e-114FFCP PHASE1:Hg19::chr19:54462276..54462325,+#_715985557c8b462e92800bc8768b86bcp@chr19:54462276..54462325, +
5.07e-114FFCP PHASE2:Hg19::chr19:54462276..54462325,+#_715985557c8b462e92800bc8768b86bcp@chr19:54462276..54462325, +
1.45e-113FFCP PHASE2:Hg19::chr16:24267508..24267525,+#_39be679d86f25ccc1f5cebc1414dfa02p4@CACNG3
1.45e-113FFCP PHASE1:Hg19::chr16:24267508..24267525,+#_39be679d86f25ccc1f5cebc1414dfa02p4@CACNG3
2.01e-113FFCP PHASE2:Hg19::chr20:1975321..1975338,-#_527772739c511ea8f9fbac0dfd4ab9f9p3@PDYN
2.01e-113FFCP PHASE1:Hg19::chr20:1975321..1975338,-#_527772739c511ea8f9fbac0dfd4ab9f9p3@PDYN
9.5e-113FFCP PHASE2:Hg19::chr5:160975135..160975218,-#_913c7b68487a1080163b5a908871910cp3@GABRB2
9.5e-113FFCP PHASE1:Hg19::chr5:160975135..160975218,-#_913c7b68487a1080163b5a908871910cp3@GABRB2
1.47e-112FFCP PHASE2:Hg19::chr11:133402367..133402378,-#_bb09554c5445937fadcb09f42b47ee33p8@OPCML
1.47e-112FFCP PHASE1:Hg19::chr11:133402367..133402378,-#_bb09554c5445937fadcb09f42b47ee33p8@OPCML
2.02e-112FFCP PHASE1:Hg19::chr12:14134636..14134651,-#_e3d6546d2e69f73f0d06edf7fc168064p@chr12:14134636..14134651, -
2.02e-112FFCP PHASE2:Hg19::chr12:14134636..14134651,-#_e3d6546d2e69f73f0d06edf7fc168064p@chr12:14134636..14134651, -
4.68e-112FFCP PHASE2:Hg19::chr4:6474536..6474563,-#_d0fcdb84f0af3556c24f2131b5457bd6p9@PPP2R2C
4.68e-112FFCP PHASE1:Hg19::chr4:6474536..6474563,-#_d0fcdb84f0af3556c24f2131b5457bd6p9@PPP2R2C
2.32e-111FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_17d5876204aa8239156ec22aa50188fcp5@ST8SIA3
2.32e-111FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_17d5876204aa8239156ec22aa50188fcp5@ST8SIA3
2.51e-111FFCP PHASE1:Hg19::chr19:54462535..54462548,+#_e3fc09181a2d6669f873632f03ded60bp@chr19:54462535..54462548, +
2.51e-111FFCP PHASE2:Hg19::chr19:54462535..54462548,+#_e3fc09181a2d6669f873632f03ded60bp@chr19:54462535..54462548, +
4.73e-111FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_45de49b47a2fcad033b4d4f24bdec680p5@OPCML
4.73e-111FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_45de49b47a2fcad033b4d4f24bdec680p5@OPCML
8.62e-111FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_77b33c4a3e5c3bc92f7e6b747d7e09b5p@chr5:80255907..80255942, +
8.62e-111FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_77b33c4a3e5c3bc92f7e6b747d7e09b5p@chr5:80255907..80255942, +
2.43e-110FFCP PHASE1:Hg19::chr6:62390886..62390903,-#_f2ecc6faf527baa3b57e7f141f163a4ep1@ENST00000511849
2.43e-110FFCP PHASE2:Hg19::chr6:62390886..62390903,-#_f2ecc6faf527baa3b57e7f141f163a4ep1@ENST00000511849
3.36e-110FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_d946b299f9ea81ea0d2771bd0a454f0bp1@NR2E1
3.36e-110FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_d946b299f9ea81ea0d2771bd0a454f0bp1@NR2E1
5.09e-110FFCP PHASE1:Hg19::chr9:112629512..112629528,+#_6333c1638c793a6078010724e7918405p7@PALM2
5.09e-110FFCP PHASE2:Hg19::chr9:112629512..112629528,+#_6333c1638c793a6078010724e7918405p7@PALM2
8.14e-110FFCP PHASE1:Hg19::chrX:152939089..152939119,-#_b03387ba66bfd24226ef8b8290365e30p2@PNCK
8.14e-110FFCP PHASE2:Hg19::chrX:152939089..152939119,-#_b03387ba66bfd24226ef8b8290365e30p2@PNCK
3.28e-109FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_3f2eb8f7784fb99ffc74705e3e3e7576p2@CDH9
3.28e-109FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_3f2eb8f7784fb99ffc74705e3e3e7576p2@CDH9
8.01e-109FFCP PHASE2:Hg19::chr19:54462010..54462060,+#_fe5347d6db7926104fe263fbdc3d4cc1p@chr19:54462010..54462060, +
8.01e-109FFCP PHASE1:Hg19::chr19:54462010..54462060,+#_fe5347d6db7926104fe263fbdc3d4cc1p@chr19:54462010..54462060, +
8.43e-109FFCP PHASE1:Hg19::chr9:112629781..112629806,+#_c1eff915d73da48ee9e0d09ca8c964bep14@PALM2-AKAP2
8.43e-109FFCP PHASE2:Hg19::chr9:112629781..112629806,+#_c1eff915d73da48ee9e0d09ca8c964bep14@PALM2-AKAP2
1.04e-108FFCP PHASE1:Hg19::chr15:80735246..80735321,+#_bcc6ec3faeb5c2b9c258a3b4f9af25adp3@ARNT2
1.04e-108FFCP PHASE2:Hg19::chr15:80735246..80735321,+#_bcc6ec3faeb5c2b9c258a3b4f9af25adp3@ARNT2
1.61e-108FFCP PHASE2:Hg19::chr11:89867681..89867695,+#_e157d2de913f20a7b221616d484a6535p2@NAALAD2
1.61e-108FFCP PHASE1:Hg19::chr11:89867681..89867695,+#_e157d2de913f20a7b221616d484a6535p2@NAALAD2
2.01e-108FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_d523738c4da413a961d175127c81cd60p8@LRRC7
2.01e-108FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_d523738c4da413a961d175127c81cd60p8@LRRC7
2.37e-108FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_457fe7a7ed15dc71e62ad806182752a7p@chr11:132982177..132982181, -
2.37e-108FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_457fe7a7ed15dc71e62ad806182752a7p@chr11:132982177..132982181, -
3.44e-108FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_c7e17c03338dbeaa4e503bf285de4f67p2@TIAM2
3.44e-108FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_c7e17c03338dbeaa4e503bf285de4f67p2@TIAM2
3.59e-108FFCP PHASE1:Hg19::chr19:54462560..54462571,+#_d08e5f8f3dee3e8d1aaabeac4299e25cp@chr19:54462560..54462571, +
3.59e-108FFCP PHASE2:Hg19::chr19:54462560..54462571,+#_d08e5f8f3dee3e8d1aaabeac4299e25cp@chr19:54462560..54462571, +
4.72e-108FFCP PHASE1:Hg19::chr17:77090555..77090587,-#_9732bd8cee779a41d372cf4e8c1260d6p@chr17:77090555..77090587, -
4.72e-108FFCP PHASE2:Hg19::chr17:77090555..77090587,-#_9732bd8cee779a41d372cf4e8c1260d6p@chr17:77090555..77090587, -
8.45e-108FFCP PHASE2:Hg19::chr2:8595510..8595529,-#_71f9ac2ed189ffa2c473cd980b612378p@chr2:8595510..8595529, -
8.45e-108FFCP PHASE1:Hg19::chr2:8595510..8595529,-#_71f9ac2ed189ffa2c473cd980b612378p@chr2:8595510..8595529, -
1.02e-107FFCP PHASE1:Hg19::chr20:1975298..1975316,-#_e4d0d5b0a791c75c36e0ff36492eb303p2@PDYN
1.02e-107FFCP PHASE2:Hg19::chr20:1975298..1975316,-#_e4d0d5b0a791c75c36e0ff36492eb303p2@PDYN
1.13e-107FFCP PHASE2:Hg19::chr4:46392290..46392324,-#_c605b28a8a3f547f3682c38d06dfb4d0p13@GABRA2
1.13e-107FFCP PHASE1:Hg19::chr4:46392290..46392324,-#_c605b28a8a3f547f3682c38d06dfb4d0p13@GABRA2
1.19e-107FFCP PHASE2:Hg19::chr16:56390359..56390376,+#_62fc32218f61147aff3748c65514db73p@chr16:56390359..56390376, +
1.19e-107FFCP PHASE1:Hg19::chr16:56390359..56390376,+#_62fc32218f61147aff3748c65514db73p@chr16:56390359..56390376, +
1.24e-107FFCP PHASE1:Hg19::chr1:156119798..156119834,+#_8960ed15271313cff6534a007e6ee2ebp5@SEMA4A
1.24e-107FFCP PHASE2:Hg19::chr1:156119798..156119834,+#_8960ed15271313cff6534a007e6ee2ebp5@SEMA4A
1.31e-107FFCP PHASE1:Hg19::chr7:54609764..54609789,+#_3346613bbd8927dc5296f9c29f718779p8@VSTM2A
1.31e-107FFCP PHASE2:Hg19::chr7:54609764..54609789,+#_3346613bbd8927dc5296f9c29f718779p8@VSTM2A
1.91e-107FFCP PHASE2:Hg19::chr12:14134689..14134704,-#_5ecef83b04cee1c07016494bd38584dep@chr12:14134689..14134704, -
1.91e-107FFCP PHASE1:Hg19::chr12:14134689..14134704,-#_5ecef83b04cee1c07016494bd38584dep@chr12:14134689..14134704, -
2.32e-107FFCP PHASE1:Hg19::chr12:14133820..14133830,-#_697dbd8e3bc58090211bf3f611961394p@chr12:14133820..14133830, -
2.32e-107FFCP PHASE2:Hg19::chr12:14133820..14133830,-#_697dbd8e3bc58090211bf3f611961394p@chr12:14133820..14133830, -
2.8e-107FFCP PHASE2:Hg19::chr12:57957885..57957898,+#_96eb1dc7e752556015b1aaf162d16e81p@chr12:57957885..57957898, +
2.8e-107FFCP PHASE1:Hg19::chr12:57957885..57957898,+#_96eb1dc7e752556015b1aaf162d16e81p@chr12:57957885..57957898, +
3.92e-107FFCP PHASE2:Hg19::chr6:101847075..101847092,+#_90f6cd4f4a57b6790940e9c0d6270ba7p5@GRIK2
3.92e-107FFCP PHASE1:Hg19::chr6:101847075..101847092,+#_90f6cd4f4a57b6790940e9c0d6270ba7p5@GRIK2
4.4e-107FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_aac510311ee1f24f7dc95fd6414433acp8@PRKCZ
4.4e-107FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_aac510311ee1f24f7dc95fd6414433acp8@PRKCZ
8.12e-107FFCP PHASE2:Hg19::chr20:34743645..34743687,-#_be291e4a3c310afd771a7f192df4f76ap1@ENST00000441208, p1@uc002xfa.1
8.12e-107FFCP PHASE1:Hg19::chr20:34743645..34743687,-#_be291e4a3c310afd771a7f192df4f76ap1@ENST00000441208, p1@uc002xfa.1
8.19e-107FFCP PHASE1:Hg19::chr2:196990526..196990535,-#_3eb3f42bc9220e83cc4de4cefb8929fap@chr2:196990526..196990535, -
8.19e-107FFCP PHASE2:Hg19::chr2:196990526..196990535,-#_3eb3f42bc9220e83cc4de4cefb8929fap@chr2:196990526..196990535, -
8.66e-107FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_fb33dc6dec46e70ad0ac91479688b8dfp9@GPM6B
8.66e-107FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_fb33dc6dec46e70ad0ac91479688b8dfp9@GPM6B
1.08e-106FFCP PHASE2:Hg19::chr16:24267634..24267671,+#_8ff4f39aeee97f11605e3a1af860ff19p2@CACNG3
1.08e-106FFCP PHASE1:Hg19::chr16:24267634..24267671,+#_8ff4f39aeee97f11605e3a1af860ff19p2@CACNG3

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