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{{UBERON
{{UBERON
|id=UBERON:0004357
|alt_id=
|name=limb/fin bud
|namespace=
|def=
|xref=VHOG:0001258
|is_a=UBERON:0002050;;UBERON:0003102;;UBERON:0004120
|synonym="paired appendage bud" EXACT []
|comment=Genes: In limb buds of chick and mouse, Shh expression is activated as soon as there is a morphological bud, whereas in S. canicula fin buds, consistent with reported data in other cartilaginous fishes, Shh is transcribed late in fin development[PMID:17187056]
|comment=Genes: In limb buds of chick and mouse, Shh expression is activated as soon as there is a morphological bud, whereas in S. canicula fin buds, consistent with reported data in other cartilaginous fishes, Shh is transcribed late in fin development[PMID:17187056]
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0005732
|develops_from=UBERON:0005732
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004357
|is_a=UBERON:0002050 ;;UBERON:0003102
|is_obsolete=
|located_in=
|located_in=
|name=paired limb/fin bud
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922
|part_of=UBERON:0000922
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="paired appendage bud" EXACT []
|union_of=
|xref=VHOG:0001258
}}
}}

Latest revision as of 17:45, 12 September 2014

Name:paired limb/fin bud
Namespace:FANTOM
Xrefs:
links:
VHOG:0001258
Synonyms: "paired appendage bud" EXACT []
Comments:Genes: In limb buds of chick and mouse, Shh expression is activated as soon as there is a morphological bud, whereas in S. canicula fin buds, consistent with reported data in other cartilaginous fishes, Shh is transcribed late in fin development[PMID:17187056]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002050(embryonic structure),UBERON:0003102(surface structure)
develops_from:UBERON:0005732(limb/fin field)
part_of:UBERON:0000922(embryo)



Children

is a:UBERON:0004347 (limb bud),UBERON:0005419 (pectoral appendage bud),UBERON:0005420 (pelvic appendage bud)
develops from:UBERON:0004708 (paired limb/fin)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004357 (paired limb/fin bud), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_e0f7000c39621f7dc80a4678a30855d9p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_e0f7000c39621f7dc80a4678a30855d9p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_e0f7000c39621f7dc80a4678a30855d9p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_e0f7000c39621f7dc80a4678a30855d9p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_e0f7000c39621f7dc80a4678a30855d9p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_e0f7000c39621f7dc80a4678a30855d9p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_e0f7000c39621f7dc80a4678a30855d9p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_e0f7000c39621f7dc80a4678a30855d9p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_e0f7000c39621f7dc80a4678a30855d9p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_e0f7000c39621f7dc80a4678a30855d9p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_e0f7000c39621f7dc80a4678a30855d9p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_e0f7000c39621f7dc80a4678a30855d9p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_e0f7000c39621f7dc80a4678a30855d9p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_e0f7000c39621f7dc80a4678a30855d9p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_e0f7000c39621f7dc80a4678a30855d9p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_e0f7000c39621f7dc80a4678a30855d9p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_e0f7000c39621f7dc80a4678a30855d9p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_e0f7000c39621f7dc80a4678a30855d9p@chr7:128483294..128483304, +
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p104@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p7@FLJ36848
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_c5c5eaaf41c2fb67f9a674ed2d7264f5p@chr15:51060095..51060101, +
2.55e-98FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_1ce0bba84d838b31b1f0619639f8a1fep@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_1ce0bba84d838b31b1f0619639f8a1fep@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_1ce0bba84d838b31b1f0619639f8a1fep@chr2:179656442..179656451, -
2.55e-98FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_1ce0bba84d838b31b1f0619639f8a1fep@chr3:69168368..69168389, -
2.55e-98FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_1ce0bba84d838b31b1f0619639f8a1fep38@CLIP1
2.55e-98FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_1ce0bba84d838b31b1f0619639f8a1fep@chr2:179656442..179656451, -
2.55e-98FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr6:125535391..125535409, +
2.55e-98FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr12:69653866..69653876, +
2.55e-98FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr3:35732964..35732965, +
2.55e-98FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_1ce0bba84d838b31b1f0619639f8a1fep27@CLIP4
2.55e-98FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr12:69653866..69653876, +
2.55e-98FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr3:35732964..35732965, +
2.55e-98FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_1ce0bba84d838b31b1f0619639f8a1fep@chr3:69168368..69168389, -
2.55e-98FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_1ce0bba84d838b31b1f0619639f8a1fep27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_1ce0bba84d838b31b1f0619639f8a1fep@chr12:102079632..102079647, -
2.55e-98FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr18:8608021..8608050, +
2.55e-98FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr6:125535391..125535409, +
2.55e-98FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_1ce0bba84d838b31b1f0619639f8a1fep@chr10:97037060..97037066, -
2.55e-98FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_1ce0bba84d838b31b1f0619639f8a1fep@chr10:29918007..29918031, -
2.55e-98FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_1ce0bba84d838b31b1f0619639f8a1fep@chr2:152566311..152566321, -
2.55e-98FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr5:95180155..95180172, +
2.55e-98FFCP PHASE2:Hg19::chr18:8608021..8608050,+#_1ce0bba84d838b31b1f0619639f8a1fep@chr18:8608021..8608050, +
2.55e-98FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_1ce0bba84d838b31b1f0619639f8a1fep38@CLIP1

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